Wall clock time and date at job start Tue Mar 31 2020 00:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47527 * 270.00554 * 3 2 1 5 5 H 1.48499 * 109.46839 * 30.00634 * 3 2 1 6 6 H 1.48503 * 109.47038 * 150.00092 * 3 2 1 7 7 C 1.37875 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00552 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47458 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47047 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.46937 * 179.97438 * 11 10 9 13 13 O 1.21290 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00055 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00301 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47309 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47086 * 60.00050 * 16 15 14 18 18 O 1.42904 * 109.47076 * 300.00105 * 16 15 14 19 19 C 1.50703 * 109.47050 * 180.02562 * 16 15 14 20 20 C 1.38651 * 120.78915 * 84.97760 * 19 16 15 21 21 C 1.38203 * 119.16168 * 179.97438 * 20 19 16 22 22 N 1.31874 * 120.76322 * 0.02562 * 21 20 19 23 23 C 1.31870 * 121.72652 * 0.02562 * 22 21 20 24 24 C 1.38201 * 120.76299 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00017 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.46364 * 60.00681 * 9 7 2 27 27 H 1.08999 * 109.47227 * 300.00832 * 9 7 2 28 28 H 1.08998 * 109.47057 * 60.00453 * 10 9 7 29 29 H 1.09000 * 109.46832 * 300.00308 * 10 9 7 30 30 H 1.08998 * 109.47124 * 60.00124 * 11 10 9 31 31 H 1.08999 * 109.47130 * 300.00218 * 11 10 9 32 32 H 0.96995 * 120.00146 * 0.02562 * 14 12 11 33 33 H 1.08998 * 109.47006 * 60.00107 * 15 14 12 34 34 H 1.08999 * 109.47250 * 300.00200 * 15 14 12 35 35 H 0.96703 * 114.00002 * 300.00145 * 18 16 15 36 36 H 1.08002 * 120.42195 * 0.04071 * 20 19 16 37 37 H 1.07996 * 119.61854 * 180.30069 * 21 20 19 38 38 H 1.08001 * 119.61693 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.41815 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4592 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0013 14 7 2.0099 -7.4032 -0.0019 15 6 2.9619 -8.5168 -0.0020 16 6 2.1968 -9.8418 -0.0027 17 1 1.5705 -9.8992 -0.8930 18 8 1.3748 -9.9179 1.1637 19 6 3.1761 -10.9873 -0.0022 20 6 3.7156 -11.4592 1.1847 21 6 4.6103 -12.5118 1.1462 22 7 4.9518 -13.0652 -0.0011 23 6 4.4595 -12.6419 -1.1489 24 6 3.5597 -11.5937 -1.1885 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8905 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6045 0.8895 29 1 2.8718 -3.6044 -0.8905 30 1 0.8537 -5.0446 -0.8914 31 1 0.8530 -5.0451 0.8885 32 1 1.0563 -7.5805 -0.0020 33 1 3.5885 -8.4592 0.8880 34 1 3.5886 -8.4591 -0.8919 35 1 1.8666 -9.8728 1.9951 36 1 3.4394 -11.0105 2.1275 37 1 5.0314 -12.8884 2.0666 38 1 4.7631 -13.1198 -2.0686 39 1 3.1598 -11.2517 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354091848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:54 Heat of formation + Delta-G solvation = -100.041361 kcal Electronic energy + Delta-G solvation = -20201.591589 eV Core-core repulsion = 16914.209217 eV Total energy + Delta-G solvation = -3287.382372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.43102 -40.68307 -38.61267 -36.15410 -35.35024 -34.03513 -33.76652 -32.14785 -30.53750 -29.04070 -26.12217 -24.79403 -24.42854 -22.62040 -22.27797 -21.18375 -18.85631 -18.64903 -17.91255 -17.70000 -16.99974 -16.84289 -16.51843 -16.47062 -16.09745 -15.90022 -15.06719 -14.94862 -14.67385 -14.57717 -14.47577 -14.20590 -13.74254 -13.60552 -13.04218 -12.74806 -12.60607 -12.51140 -12.45321 -12.39673 -11.59353 -11.54901 -11.46741 -11.26607 -10.86955 -10.60246 -10.54058 -10.42239 -10.17414 -10.10016 -8.20018 -6.29861 0.15963 0.17066 1.39809 1.40809 1.52331 1.64514 2.13300 2.42054 2.80606 3.12908 3.29652 3.44716 3.57787 3.70115 3.78954 3.95971 4.09023 4.15058 4.21264 4.25148 4.28826 4.60607 4.65629 4.72004 4.83765 4.86468 4.93843 4.98578 5.12232 5.19786 5.28253 5.38719 5.55009 5.72638 5.76372 5.87641 6.27901 6.52062 6.59710 6.85730 6.99766 7.26165 7.38737 8.91437 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047556 B = 0.002356 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.641047 B =11883.150315 C =12104.497750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.713 5.713 15 C 0.094 3.906 16 C 0.155 3.845 17 H 0.133 0.867 18 O -0.555 6.555 19 C -0.081 4.081 20 C -0.165 4.165 21 C 0.088 3.912 22 N -0.516 5.516 23 C 0.087 3.913 24 C -0.163 4.163 25 H 0.265 0.735 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.419 0.581 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.390 0.610 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -27.425 0.329 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.366 5.366 15 C -0.030 4.030 16 C 0.095 3.905 17 H 0.151 0.849 18 O -0.363 6.363 19 C -0.091 4.091 20 C -0.185 4.185 21 C -0.069 4.069 22 N -0.225 5.225 23 C -0.069 4.069 24 C -0.183 4.183 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.979 -27.916 -0.098 28.199 hybrid contribution -0.087 1.642 0.366 1.685 sum 3.892 -26.274 0.268 26.562 Atomic orbital electron populations 1.70065 1.07471 1.27775 1.51596 1.25912 0.95846 1.03077 0.94741 0.85499 0.78615 0.78717 0.78538 1.19715 1.20316 1.19308 1.21694 0.93323 0.92841 1.50669 0.93103 1.19029 0.94227 0.92382 0.95564 1.21162 0.97615 0.93065 1.00246 1.21676 0.97920 0.91591 1.05838 1.21051 0.89313 0.84821 0.74343 1.90677 1.19074 1.85543 1.51287 1.45750 1.11318 1.04267 1.75305 1.21994 0.92346 0.85738 1.02948 1.20919 0.90272 0.88191 0.91134 0.84950 1.86642 1.37119 1.96068 1.16454 1.20969 0.96782 0.96869 0.94437 1.22192 0.98123 0.98567 0.99606 1.23158 0.94212 0.92751 0.96750 1.67700 1.25098 1.30048 0.99676 1.23192 0.93055 0.93968 0.96731 1.22305 0.99156 0.97276 0.99557 0.92667 0.98029 0.98038 0.94158 0.94133 0.87298 0.87338 0.74355 0.91679 0.91194 0.75945 0.82518 0.80783 0.80706 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.60 4.44 30.60 0.14 -3.46 16 11 C -0.13 -4.09 5.70 29.85 0.17 -3.92 16 12 C 0.52 15.47 7.83 87.66 0.69 16.16 16 13 O -0.59 -22.99 15.98 -3.06 -0.05 -23.04 16 14 N -0.71 -14.07 5.45 -463.06 -2.52 -16.59 16 15 C 0.09 1.58 5.32 86.38 0.46 2.03 16 16 C 0.15 1.72 3.33 29.85 0.10 1.82 16 17 H 0.13 1.19 8.07 -2.39 -0.02 1.17 16 18 O -0.56 -6.38 12.89 -148.98 -1.92 -8.30 16 19 C -0.08 -0.99 5.03 -19.67 -0.10 -1.09 16 20 C -0.17 -1.90 9.41 22.36 0.21 -1.69 16 21 C 0.09 1.21 11.18 84.68 0.95 2.16 16 22 N -0.52 -9.05 10.36 -195.85 -2.03 -11.07 16 23 C 0.09 1.20 11.18 84.68 0.95 2.15 16 24 C -0.16 -1.92 9.80 22.36 0.22 -1.70 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 27 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 29 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.42 6.10 8.35 -92.71 -0.77 5.32 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.39 2.47 7.48 -74.06 -0.55 1.91 16 36 H 0.16 0.94 6.73 -2.91 -0.02 0.92 16 37 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -77.67 337.51 0.14 -77.53 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -0.26 Total: 7.74 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.62 Total: -17.42 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -4.27 Total: -83.69 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.97 Total: -31.33 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -77.67 0.14 -77.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354091848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.514 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds