Wall clock time and date at job start Tue Mar 31 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48495 * 109.46767 * 269.99798 * 3 2 1 5 5 H 1.48497 * 109.47102 * 30.00324 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99959 * 3 2 1 7 7 C 1.37876 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99925 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47478 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27039 * 12 11 10 14 14 N 1.34784 * 119.99635 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.47110 * 304.99985 * 16 15 14 18 18 O 1.42895 * 109.47262 * 65.00081 * 16 15 14 19 19 C 1.50704 * 109.47291 * 185.00235 * 16 15 14 20 20 C 1.38671 * 120.41987 * 99.99571 * 19 16 15 21 21 C 1.38632 * 118.41864 * 179.97438 * 20 19 16 22 22 C 1.38225 * 119.16122 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76399 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72596 * 359.71209 * 23 22 21 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47395 * 59.99442 * 9 7 2 27 27 H 1.09004 * 109.47205 * 299.99934 * 9 7 2 28 28 H 1.08997 * 109.47365 * 59.99299 * 10 9 7 29 29 H 1.09002 * 109.47075 * 299.99674 * 10 9 7 30 30 H 1.09005 * 109.47089 * 59.99653 * 11 10 9 31 31 H 1.09002 * 109.46787 * 299.99995 * 11 10 9 32 32 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 33 33 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 34 34 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 35 35 H 0.96699 * 114.00430 * 59.99826 * 18 16 15 36 36 H 1.08003 * 120.78795 * 359.97438 * 20 19 16 37 37 H 1.07998 * 120.41675 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.61814 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.61880 * 180.30415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0539 -4.0573 0.0015 13 8 5.2658 -4.9791 -0.0031 14 7 7.3790 -4.3036 0.0010 15 6 7.8674 -5.6847 0.0020 16 6 9.3973 -5.6847 0.0019 17 1 9.7606 -5.0960 -0.8405 18 8 9.8738 -5.1144 1.2223 19 6 9.8997 -7.1003 -0.1209 20 6 10.3293 -7.5891 -1.3455 21 6 10.7837 -8.8972 -1.4110 22 6 10.7929 -9.6654 -0.2619 23 7 10.3768 -9.1671 0.8858 24 6 9.9437 -7.9255 0.9865 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8752 -0.6804 -0.8889 28 1 3.6585 -3.1502 -0.8891 29 1 3.6580 -3.1505 0.8908 30 1 5.9150 -2.1227 0.8910 31 1 5.9148 -2.1226 -0.8890 32 1 8.0093 -3.5663 0.0007 33 1 7.5045 -6.1977 0.8927 34 1 7.5035 -6.1995 -0.8873 35 1 9.5886 -5.5881 2.0156 36 1 10.3103 -6.9655 -2.2271 37 1 11.1262 -9.3107 -2.3480 38 1 11.1450 -10.6854 -0.3046 39 1 9.6153 -7.5508 1.9448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354092477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:15 Heat of formation + Delta-G solvation = -68.962878 kcal Electronic energy + Delta-G solvation = -20250.373856 eV Core-core repulsion = 16964.339149 eV Total energy + Delta-G solvation = -3286.034707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.91562 -39.59398 -37.87402 -34.56695 -34.20154 -33.24832 -32.12071 -31.94315 -29.35060 -27.84597 -24.81630 -24.11226 -23.27385 -22.05384 -20.53945 -19.82861 -18.21808 -17.33441 -17.13744 -16.85831 -16.52512 -15.82360 -15.57148 -15.20135 -14.95943 -14.53467 -14.15276 -14.08516 -13.70039 -13.58119 -13.37532 -12.80780 -12.62626 -12.47584 -12.02719 -11.96842 -11.58050 -10.97922 -10.89093 -10.77714 -10.31333 -10.02606 -9.93679 -9.84053 -9.69573 -9.57588 -9.39545 -9.15558 -9.12270 -8.50173 -5.99811 -3.97575 0.53549 0.75924 2.82848 3.04457 3.30960 3.32269 3.39446 3.42438 3.82200 3.89913 4.19078 4.26098 4.31661 4.46724 4.47922 4.51993 4.75439 5.00514 5.04612 5.17839 5.32250 5.33521 5.45191 5.57081 5.59230 5.60354 5.71976 6.10484 6.13805 6.32441 6.56834 6.69789 6.93121 7.00423 7.38197 7.45752 7.46639 7.50147 7.83650 8.35618 8.60201 9.06916 9.62191 11.13874 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045919 B = 0.002467 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.622093 B =11348.119940 C =11570.201249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.513 3.487 13 O -0.535 6.535 14 N -0.736 5.736 15 C 0.093 3.907 16 C 0.145 3.855 17 H 0.117 0.883 18 O -0.548 6.548 19 C -0.169 4.169 20 C -0.061 4.061 21 C -0.170 4.170 22 C 0.100 3.900 23 N -0.481 5.481 24 C 0.111 3.889 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.379 0.621 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.158 0.842 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.989 -14.809 -1.762 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.181 4.181 12 C 0.300 3.700 13 O -0.411 6.411 14 N -0.390 5.390 15 C -0.032 4.032 16 C 0.084 3.916 17 H 0.135 0.865 18 O -0.354 6.354 19 C -0.172 4.172 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.057 4.057 23 N -0.189 5.189 24 C -0.046 4.046 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 26.525 -15.484 -1.419 30.747 hybrid contribution 0.420 1.285 -0.519 1.448 sum 26.945 -14.199 -1.938 30.519 Atomic orbital electron populations 1.69924 1.06306 1.26786 1.51359 1.25062 0.94758 0.99176 0.94721 0.86751 0.80324 0.83617 0.78398 1.20367 1.21457 1.19026 1.21164 0.89541 0.94534 1.50417 0.90952 1.19609 0.97313 0.92165 0.96119 1.21268 0.89220 0.99553 1.02521 1.21868 1.00669 0.91728 1.03801 1.21216 0.81264 0.92734 0.74746 1.90701 1.55215 1.46773 1.48405 1.46009 1.07757 1.07729 1.77531 1.21948 0.92718 0.85066 1.03456 1.20959 0.91964 0.89557 0.89100 0.86513 1.86650 1.76741 1.56705 1.15352 1.21400 1.02237 0.98069 0.95477 1.21495 0.94294 0.95689 0.97265 1.22192 1.01329 0.94965 1.00484 1.22872 0.94793 1.00153 0.87881 1.67723 1.09883 1.13547 1.27759 1.22505 0.94840 0.89128 0.98135 0.92802 0.96631 0.97098 0.92132 0.92089 0.89257 0.89313 0.76175 0.91070 0.90573 0.77260 0.84402 0.84376 0.82502 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.47 16 10 C -0.09 -1.81 4.44 -26.73 -0.12 -1.93 16 11 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16 12 C 0.51 7.70 7.83 -10.98 -0.09 7.61 16 13 O -0.54 -10.38 15.98 5.56 0.09 -10.29 16 14 N -0.74 -7.69 5.50 -60.30 -0.33 -8.02 16 15 C 0.09 0.84 5.29 -4.05 -0.02 0.81 16 16 C 0.14 0.95 3.26 -27.89 -0.09 0.86 16 17 H 0.12 0.66 8.03 -51.93 -0.42 0.24 16 18 O -0.55 -3.81 13.14 -35.23 -0.46 -4.28 16 19 C -0.17 -1.18 4.99 -104.48 -0.52 -1.70 16 20 C -0.06 -0.38 9.82 -39.28 -0.39 -0.76 16 21 C -0.17 -0.98 10.11 -39.44 -0.40 -1.38 16 22 C 0.10 0.70 11.18 -17.55 -0.20 0.50 16 23 N -0.48 -4.37 10.36 -13.25 -0.14 -4.50 16 24 C 0.11 0.86 10.49 -17.55 -0.18 0.68 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.06 1.33 8.10 -51.93 -0.42 0.90 16 29 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.40 3.27 8.47 -40.82 -0.35 2.92 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.38 1.65 7.52 45.56 0.34 1.99 16 36 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.15 0.85 6.79 -52.48 -0.36 0.49 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -36.80 334.28 -7.34 -44.13 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.93 Total: 0.27 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.70 Total: -11.81 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.30 Total: -40.21 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.37 Total: -14.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.80 -7.34 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354092477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.829 kcal (2) G-P(sol) polarization free energy of solvation -36.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds