Wall clock time and date at job start Tue Mar 31 2020 00:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48495 * 109.46767 * 269.99798 * 3 2 1 5 5 H 1.48497 * 109.47102 * 30.00324 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99959 * 3 2 1 7 7 C 1.37876 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99925 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47478 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00413 * 0.27039 * 12 11 10 14 14 N 1.34784 * 119.99635 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99971 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.47110 * 304.99985 * 16 15 14 18 18 O 1.42895 * 109.47262 * 65.00081 * 16 15 14 19 19 C 1.50704 * 109.47291 * 185.00235 * 16 15 14 20 20 C 1.38671 * 120.41987 * 99.99571 * 19 16 15 21 21 C 1.38632 * 118.41864 * 179.97438 * 20 19 16 22 22 C 1.38225 * 119.16122 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76399 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72596 * 359.71209 * 23 22 21 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47395 * 59.99442 * 9 7 2 27 27 H 1.09004 * 109.47205 * 299.99934 * 9 7 2 28 28 H 1.08997 * 109.47365 * 59.99299 * 10 9 7 29 29 H 1.09002 * 109.47075 * 299.99674 * 10 9 7 30 30 H 1.09005 * 109.47089 * 59.99653 * 11 10 9 31 31 H 1.09002 * 109.46787 * 299.99995 * 11 10 9 32 32 H 0.96999 * 120.00044 * 0.02562 * 14 12 11 33 33 H 1.09004 * 109.47024 * 300.00310 * 15 14 12 34 34 H 1.09005 * 109.47136 * 59.99926 * 15 14 12 35 35 H 0.96699 * 114.00430 * 59.99826 * 18 16 15 36 36 H 1.08003 * 120.78795 * 359.97438 * 20 19 16 37 37 H 1.07998 * 120.41675 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.61814 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.61880 * 180.30415 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0539 -4.0573 0.0015 13 8 5.2658 -4.9791 -0.0031 14 7 7.3790 -4.3036 0.0010 15 6 7.8674 -5.6847 0.0020 16 6 9.3973 -5.6847 0.0019 17 1 9.7606 -5.0960 -0.8405 18 8 9.8738 -5.1144 1.2223 19 6 9.8997 -7.1003 -0.1209 20 6 10.3293 -7.5891 -1.3455 21 6 10.7837 -8.8972 -1.4110 22 6 10.7929 -9.6654 -0.2619 23 7 10.3768 -9.1671 0.8858 24 6 9.9437 -7.9255 0.9865 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8752 -0.6804 -0.8889 28 1 3.6585 -3.1502 -0.8891 29 1 3.6580 -3.1505 0.8908 30 1 5.9150 -2.1227 0.8910 31 1 5.9148 -2.1226 -0.8890 32 1 8.0093 -3.5663 0.0007 33 1 7.5045 -6.1977 0.8927 34 1 7.5035 -6.1995 -0.8873 35 1 9.5886 -5.5881 2.0156 36 1 10.3103 -6.9655 -2.2271 37 1 11.1262 -9.3107 -2.3480 38 1 11.1450 -10.6854 -0.3046 39 1 9.6153 -7.5508 1.9448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354092477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:15 Heat of formation + Delta-G solvation = -98.308706 kcal Electronic energy + Delta-G solvation = -20251.646387 eV Core-core repulsion = 16964.339149 eV Total energy + Delta-G solvation = -3287.307238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45113 -40.67839 -38.52045 -36.16584 -35.35291 -34.12593 -33.76372 -32.48540 -30.67338 -29.03150 -25.96027 -24.71284 -24.46741 -22.62470 -22.10596 -21.19955 -18.98228 -18.70262 -18.03731 -17.68221 -17.58162 -16.84830 -16.50754 -16.25622 -15.85613 -15.73365 -15.09295 -14.95901 -14.78183 -14.61531 -14.47309 -14.01917 -13.80312 -13.67293 -13.18758 -13.02509 -12.68933 -12.53618 -12.46421 -11.78300 -11.72673 -11.48297 -11.45445 -11.31579 -10.90297 -10.74879 -10.74095 -10.41378 -10.13929 -10.01886 -8.26857 -6.32480 0.04954 0.29065 1.39423 1.43109 1.55236 1.66632 2.15590 2.40058 2.78349 3.08203 3.33370 3.40892 3.69609 3.71810 3.84623 3.94649 4.03329 4.06382 4.19579 4.21685 4.28734 4.56266 4.62199 4.72977 4.80859 4.85624 4.94230 4.98914 5.05793 5.14131 5.24084 5.39014 5.58366 5.61842 5.69310 5.70278 6.31713 6.54604 6.61402 6.76396 6.96454 7.28895 7.32002 8.90796 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045919 B = 0.002467 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.622093 B =11348.119940 C =11570.201249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.010 4.010 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.512 3.488 13 O -0.590 6.590 14 N -0.712 5.712 15 C 0.093 3.907 16 C 0.162 3.838 17 H 0.134 0.866 18 O -0.557 6.557 19 C -0.176 4.176 20 C -0.068 4.068 21 C -0.169 4.169 22 C 0.084 3.916 23 N -0.515 5.515 24 C 0.093 3.907 25 H 0.266 0.734 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.420 0.580 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.574 -13.129 -2.442 33.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.047 4.047 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.470 6.470 14 N -0.366 5.366 15 C -0.031 4.031 16 C 0.102 3.898 17 H 0.151 0.849 18 O -0.364 6.364 19 C -0.179 4.179 20 C -0.094 4.094 21 C -0.189 4.189 22 C -0.072 4.072 23 N -0.224 5.224 24 C -0.063 4.063 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.239 0.761 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 30.180 -13.812 -2.090 33.256 hybrid contribution -0.749 0.622 -0.313 1.022 sum 29.431 -13.190 -2.403 32.341 Atomic orbital electron populations 1.70110 1.08701 1.28271 1.52741 1.26224 0.95773 1.04198 0.93904 0.85478 0.79667 0.76977 0.79394 1.18872 1.21297 1.15796 1.21568 0.92779 0.92793 1.50634 0.96311 1.19554 0.93405 0.94388 0.97367 1.21047 0.93655 0.97069 1.00218 1.21720 0.96134 0.92574 1.06612 1.21171 0.82320 0.92074 0.74364 1.90695 1.56889 1.48107 1.51309 1.45756 1.06429 1.09097 1.75277 1.22031 0.94641 0.83820 1.02653 1.20811 0.89715 0.89686 0.89593 0.84884 1.86625 1.76754 1.57117 1.15941 1.21455 1.02593 0.98085 0.95726 1.21879 0.93582 0.96219 0.97721 1.22511 1.00461 0.94771 1.01117 1.23307 0.94679 1.01290 0.87919 1.67710 1.11162 1.14383 1.29132 1.22780 0.95201 0.89161 0.99177 0.92530 0.95101 0.95170 0.94556 0.94640 0.86497 0.86275 0.74243 0.91987 0.91470 0.76080 0.82122 0.81727 0.80728 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.02 13.96 21.45 0.30 -61.72 16 2 C -0.01 -0.31 5.47 84.65 0.46 0.15 16 3 Si 0.96 43.90 27.47 68.60 1.88 45.78 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 7 C -0.54 -32.53 9.66 25.60 0.25 -32.28 16 8 H 0.02 1.27 7.99 -2.91 -0.02 1.25 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.08 -3.38 4.44 30.59 0.14 -3.25 16 11 C -0.13 -3.62 5.70 29.85 0.17 -3.45 16 12 C 0.51 14.65 7.83 87.65 0.69 15.34 16 13 O -0.59 -23.20 15.98 -3.01 -0.05 -23.25 16 14 N -0.71 -13.10 5.50 -463.07 -2.55 -15.65 16 15 C 0.09 1.53 5.29 86.38 0.46 1.99 16 16 C 0.16 1.74 3.26 29.85 0.10 1.84 16 17 H 0.13 1.03 8.03 -2.38 -0.02 1.01 16 18 O -0.56 -6.37 13.14 -148.98 -1.96 -8.32 16 19 C -0.18 -2.16 4.99 -19.77 -0.10 -2.26 16 20 C -0.07 -0.69 9.82 22.47 0.22 -0.47 16 21 C -0.17 -1.61 10.11 22.36 0.23 -1.38 16 22 C 0.08 1.09 11.18 84.69 0.95 2.04 16 23 N -0.52 -9.19 10.36 -195.84 -2.03 -11.21 16 24 C 0.09 1.39 10.49 84.67 0.89 2.28 16 25 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 27 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 28 H 0.04 1.63 8.10 -2.39 -0.02 1.62 16 29 H 0.03 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.42 5.17 8.47 -92.71 -0.79 4.38 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.39 2.69 7.52 -74.06 -0.56 2.13 16 36 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.16 1.76 6.79 -2.91 -0.02 1.74 16 Total: -1.00 -84.00 334.28 -0.17 -84.17 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -0.33 Total: 9.99 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.56 Total: -19.79 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.28 Total: -88.58 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -2.01 Total: -31.57 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -84.00 -0.17 -84.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354092477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.137 kcal (2) G-P(sol) polarization free energy of solvation -84.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds