Wall clock time and date at job start Mon Mar 30 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00279 * 2 1 4 4 C 1.50697 * 109.47372 * 66.04346 * 3 2 1 5 5 H 1.08002 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00731 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00332 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99428 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47244 * 89.99757 * 8 6 4 10 10 H 1.48496 * 109.47022 * 210.00106 * 8 6 4 11 11 H 1.48497 * 109.47245 * 329.99814 * 8 6 4 12 12 C 1.46902 * 111.00267 * 236.04765 * 2 1 3 13 13 C 1.50708 * 109.46767 * 293.95436 * 12 2 1 14 14 C 1.37864 * 120.05036 * 115.02067 * 13 12 2 15 15 C 1.40201 * 118.63650 * 179.97438 * 14 13 12 16 16 O 1.22157 * 120.60076 * 180.02562 * 15 14 13 17 17 N 1.34829 * 118.79309 * 359.97438 * 15 14 13 18 18 N 1.40057 * 132.22765 * 179.97438 * 17 15 14 19 19 C 1.30431 * 108.29179 * 180.02562 * 18 17 15 20 20 N 1.38298 * 125.55175 * 180.27141 * 19 18 17 21 21 N 1.37075 * 108.89762 * 359.97438 * 19 18 17 22 22 H 0.97000 * 125.92050 * 179.97438 * 21 19 18 23 23 C 1.35160 * 120.21776 * 0.02562 * 17 15 14 24 24 N 1.32337 * 121.07706 * 359.97438 * 23 17 15 25 25 H 1.08994 * 109.46961 * 183.95848 * 1 2 3 26 26 H 1.09001 * 109.47162 * 303.95439 * 1 2 3 27 27 H 1.09001 * 109.46988 * 63.95483 * 1 2 3 28 28 H 1.09002 * 109.47735 * 186.04763 * 3 2 1 29 29 H 1.09004 * 109.47006 * 306.04841 * 3 2 1 30 30 H 0.97003 * 120.00195 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47772 * 173.95401 * 12 2 1 32 32 H 1.09000 * 109.46761 * 53.94845 * 12 2 1 33 33 H 1.07997 * 120.67811 * 359.95298 * 14 13 12 34 34 H 0.97001 * 120.00306 * 179.69141 * 20 19 18 35 35 H 0.96998 * 120.00005 * 359.68280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5113 2.0487 6 6 2.0269 3.3495 1.5285 7 7 1.7144 3.9390 2.6618 8 14 2.9989 4.2766 0.2304 9 1 2.0615 4.9802 -0.6814 10 1 3.8857 5.2682 0.8903 11 1 3.8224 3.3182 -0.5497 12 6 1.9955 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 0.7845 -2.8273 -1.8704 15 6 0.4714 -4.1819 -1.6893 16 8 -0.2797 -4.7554 -2.4634 17 7 1.0152 -4.8402 -0.6458 18 7 0.9003 -6.1647 -0.2053 19 6 1.6330 -6.3053 0.8645 20 7 1.7828 -7.4740 1.5887 21 7 2.2357 -5.1078 1.1504 22 1 2.8339 -4.9350 1.8942 23 6 1.8457 -4.1980 0.2055 24 7 2.1423 -2.9195 0.0362 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 1.9884 4.8554 2.8235 31 1 3.0798 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 0.3662 -2.2706 -2.6959 34 1 2.3539 -7.4890 2.3726 35 1 1.3167 -8.2786 1.3128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459605441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:13 Heat of formation + Delta-G solvation = 113.534041 kcal Electronic energy + Delta-G solvation = -21118.440429 eV Core-core repulsion = 17769.071790 eV Total energy + Delta-G solvation = -3349.368639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.31041 -39.72534 -37.74866 -36.47763 -35.15942 -34.00962 -32.52429 -31.03137 -30.31935 -28.10941 -27.13915 -24.45521 -24.30072 -22.54050 -22.01116 -20.26556 -19.11097 -18.99385 -17.55604 -17.22023 -17.11768 -16.79329 -16.55557 -15.15034 -14.86637 -14.53847 -14.32062 -14.21571 -14.09010 -13.36319 -12.99154 -12.46390 -12.18621 -12.04364 -11.80787 -11.58327 -11.34190 -11.05102 -10.82259 -10.66574 -10.38549 -10.15862 -9.88392 -9.68519 -9.29760 -9.19420 -8.57108 -7.96456 -7.42280 -6.04316 -4.01649 0.66420 1.32590 1.38524 1.65233 2.12894 3.29491 3.30611 3.37275 3.38588 3.66307 3.96709 4.10126 4.42735 4.63943 4.76626 4.99035 5.28342 5.42204 5.52163 5.67253 5.83513 5.88034 6.10141 6.10784 6.25774 6.35267 6.55976 6.68930 6.73062 6.83656 6.97245 7.13398 7.56568 7.77631 7.84829 7.98360 8.00911 8.65114 9.04596 9.56955 11.08805 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.003950 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.304845 B = 7086.441060 C = 7641.222554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.517 5.517 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.098 3.902 13 C 0.250 3.750 14 C -0.328 4.328 15 C 0.551 3.449 16 O -0.532 6.532 17 N -0.362 5.362 18 N -0.331 5.331 19 C 0.551 3.449 20 N -0.812 5.812 21 N -0.620 5.620 22 H 0.448 0.552 23 C 0.549 3.451 24 N -0.519 5.519 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.017 0.983 28 H 0.032 0.968 29 H -0.013 1.013 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.164 0.836 34 H 0.420 0.580 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -21.243 -1.883 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.241 5.241 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.031 4.031 13 C 0.121 3.879 14 C -0.358 4.358 15 C 0.355 3.645 16 O -0.407 6.407 17 N -0.171 5.171 18 N -0.167 5.167 19 C 0.183 3.817 20 N -0.371 5.371 21 N -0.256 5.256 22 H 0.292 0.708 23 C 0.193 3.807 24 N -0.252 5.252 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.005 0.995 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.181 0.819 34 H 0.252 0.748 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.155 -21.650 -2.195 21.988 hybrid contribution 0.610 0.675 -0.546 1.061 sum 3.764 -20.975 -2.741 21.485 Atomic orbital electron populations 1.22304 0.87967 0.99938 1.01216 1.61940 1.07499 1.16411 1.38242 1.20237 0.95399 0.83459 0.97287 1.21005 1.35557 0.97136 1.00870 0.90105 1.24888 0.95776 0.97331 0.95332 1.69888 1.46946 1.13226 1.23942 0.86865 0.80633 0.80091 0.82162 1.20347 1.21216 1.19065 1.21082 1.01832 0.86041 0.94187 1.21325 0.86212 0.95499 0.84817 1.22590 1.11673 0.92740 1.08790 1.16919 0.81905 0.86990 0.78684 1.90964 1.37545 1.68748 1.43482 1.48487 1.37193 1.07258 1.24116 1.77958 1.28248 0.97009 1.13460 1.20101 0.89243 0.82294 0.90095 1.41021 1.56468 1.07313 1.32323 1.41984 1.47572 1.06962 1.29089 0.70819 1.19946 0.87661 0.88180 0.84949 1.67677 1.32523 0.98748 1.26300 0.93742 0.89891 0.96490 0.95032 0.99533 0.92674 0.88598 0.92778 0.81892 0.74751 0.73317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.18 60.07 0.55 1.22 16 2 N -0.52 -10.62 4.74 -245.82 -1.17 -11.79 16 3 C 0.16 3.81 3.79 -4.98 -0.02 3.79 16 4 C -0.51 -14.15 9.01 -34.44 -0.31 -14.46 16 5 H 0.08 2.47 7.37 -52.49 -0.39 2.08 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 8 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.08 6.54 56.52 0.37 -5.72 16 12 C 0.10 1.62 5.36 -4.97 -0.03 1.60 16 13 C 0.25 4.01 5.16 -82.33 -0.43 3.58 16 14 C -0.33 -5.22 9.71 -38.98 -0.38 -5.59 16 15 C 0.55 9.83 7.71 -15.50 -0.12 9.71 16 16 O -0.53 -11.11 17.96 4.77 0.09 -11.03 16 17 N -0.36 -5.64 3.78 -15.90 -0.06 -5.70 16 18 N -0.33 -4.41 12.63 30.25 0.38 -4.03 16 19 C 0.55 4.54 9.47 -319.39 -3.02 1.52 16 20 N -0.81 -2.13 9.06 30.24 0.27 -1.85 16 21 N -0.62 -5.26 6.17 -14.21 -0.09 -5.34 16 22 H 0.45 2.16 8.96 -40.82 -0.37 1.79 16 23 C 0.55 7.48 9.00 -321.71 -2.90 4.58 16 24 N -0.52 -8.14 10.37 -10.05 -0.10 -8.25 16 25 H 0.04 0.80 7.28 -51.93 -0.38 0.42 16 26 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.03 0.74 6.99 -51.93 -0.36 0.38 16 29 H -0.01 -0.30 7.55 -51.93 -0.39 -0.69 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.10 1.52 7.93 -51.93 -0.41 1.11 16 32 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.16 2.33 7.98 -52.49 -0.42 1.91 16 34 H 0.42 -0.29 8.95 -40.82 -0.37 -0.66 16 35 H 0.43 0.65 8.95 -40.82 -0.37 0.28 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -38.12 303.83 -10.53 -48.65 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.80 Total: -2.91 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -6.75 Total: 7.77 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.01 Total: -63.46 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -38.12 -10.53 -48.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459605441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.186 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds