Wall clock time and date at job start Mon Mar 30 2020 23:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00279 * 2 1 4 4 C 1.50697 * 109.47372 * 66.04346 * 3 2 1 5 5 H 1.08002 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00731 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00332 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99428 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47244 * 89.99757 * 8 6 4 10 10 H 1.48496 * 109.47022 * 210.00106 * 8 6 4 11 11 H 1.48497 * 109.47245 * 329.99814 * 8 6 4 12 12 C 1.46902 * 111.00267 * 236.04765 * 2 1 3 13 13 C 1.50708 * 109.46767 * 293.95436 * 12 2 1 14 14 C 1.37864 * 120.05036 * 115.02067 * 13 12 2 15 15 C 1.40201 * 118.63650 * 179.97438 * 14 13 12 16 16 O 1.22157 * 120.60076 * 180.02562 * 15 14 13 17 17 N 1.34829 * 118.79309 * 359.97438 * 15 14 13 18 18 N 1.40057 * 132.22765 * 179.97438 * 17 15 14 19 19 C 1.30431 * 108.29179 * 180.02562 * 18 17 15 20 20 N 1.38298 * 125.55175 * 180.27141 * 19 18 17 21 21 N 1.37075 * 108.89762 * 359.97438 * 19 18 17 22 22 H 0.97000 * 125.92050 * 179.97438 * 21 19 18 23 23 C 1.35160 * 120.21776 * 0.02562 * 17 15 14 24 24 N 1.32337 * 121.07706 * 359.97438 * 23 17 15 25 25 H 1.08994 * 109.46961 * 183.95848 * 1 2 3 26 26 H 1.09001 * 109.47162 * 303.95439 * 1 2 3 27 27 H 1.09001 * 109.46988 * 63.95483 * 1 2 3 28 28 H 1.09002 * 109.47735 * 186.04763 * 3 2 1 29 29 H 1.09004 * 109.47006 * 306.04841 * 3 2 1 30 30 H 0.97003 * 120.00195 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47772 * 173.95401 * 12 2 1 32 32 H 1.09000 * 109.46761 * 53.94845 * 12 2 1 33 33 H 1.07997 * 120.67811 * 359.95298 * 14 13 12 34 34 H 0.97001 * 120.00306 * 179.69141 * 20 19 18 35 35 H 0.96998 * 120.00005 * 359.68280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5113 2.0487 6 6 2.0269 3.3495 1.5285 7 7 1.7144 3.9390 2.6618 8 14 2.9989 4.2766 0.2304 9 1 2.0615 4.9802 -0.6814 10 1 3.8857 5.2682 0.8903 11 1 3.8224 3.3182 -0.5497 12 6 1.9955 -0.7659 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 0.7845 -2.8273 -1.8704 15 6 0.4714 -4.1819 -1.6893 16 8 -0.2797 -4.7554 -2.4634 17 7 1.0152 -4.8402 -0.6458 18 7 0.9003 -6.1647 -0.2053 19 6 1.6330 -6.3053 0.8645 20 7 1.7828 -7.4740 1.5887 21 7 2.2357 -5.1078 1.1504 22 1 2.8339 -4.9350 1.8942 23 6 1.8457 -4.1980 0.2055 24 7 2.1423 -2.9195 0.0362 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5612 1.9273 -0.8309 30 1 1.9884 4.8554 2.8235 31 1 3.0798 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0628 33 1 0.3662 -2.2706 -2.6959 34 1 2.3539 -7.4890 2.3726 35 1 1.3167 -8.2786 1.3128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459605441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:12 Heat of formation + Delta-G solvation = 85.504828 kcal Electronic energy + Delta-G solvation = -21119.655867 eV Core-core repulsion = 17769.071790 eV Total energy + Delta-G solvation = -3350.584077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.31786 -40.83737 -39.11797 -37.83736 -36.05835 -34.92192 -34.54737 -32.19150 -31.47770 -29.88878 -28.57030 -26.00070 -25.44128 -23.47128 -23.38608 -21.90066 -20.12260 -19.92371 -18.94653 -18.55734 -18.25826 -17.89160 -17.11710 -16.68723 -16.33334 -16.07126 -15.76070 -15.58611 -15.43600 -14.83165 -14.46476 -14.03801 -13.65977 -13.47175 -13.06066 -12.93946 -12.68817 -12.52608 -12.47555 -12.14019 -11.80467 -11.68254 -11.52621 -11.39684 -10.91759 -10.72264 -10.00314 -9.15584 -9.00496 -8.21322 -6.24497 -0.47842 0.37325 0.40693 0.80859 1.13474 1.42642 1.44083 1.54854 2.41526 2.42297 2.50400 3.07373 3.12469 3.15426 3.31960 3.69537 3.77746 4.28931 4.34574 4.46900 4.54210 4.67227 4.71249 4.91221 4.99287 5.08147 5.22255 5.28513 5.39497 5.59438 5.69368 5.99782 6.04190 6.32175 6.56754 6.62783 6.70253 6.81856 6.86333 7.38680 8.95399 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.028325 B = 0.003950 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.304845 B = 7086.441060 C = 7641.222554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.534 5.534 3 C 0.171 3.829 4 C -0.513 4.513 5 H 0.035 0.965 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.241 1.241 12 C 0.099 3.901 13 C 0.253 3.747 14 C -0.330 4.330 15 C 0.540 3.460 16 O -0.578 6.578 17 N -0.368 5.368 18 N -0.382 5.382 19 C 0.572 3.428 20 N -0.775 5.775 21 N -0.597 5.597 22 H 0.466 0.534 23 C 0.548 3.452 24 N -0.537 5.537 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.040 0.960 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.175 0.825 34 H 0.441 0.559 35 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -22.413 -2.483 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.258 5.258 3 C 0.045 3.955 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.164 1.164 12 C -0.029 4.029 13 C 0.122 3.878 14 C -0.359 4.359 15 C 0.345 3.655 16 O -0.458 6.458 17 N -0.175 5.175 18 N -0.221 5.221 19 C 0.203 3.797 20 N -0.337 5.337 21 N -0.235 5.235 22 H 0.314 0.686 23 C 0.191 3.809 24 N -0.271 5.271 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.193 0.807 34 H 0.277 0.723 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 4.939 -22.918 -2.692 23.598 hybrid contribution 0.088 0.822 -0.136 0.838 sum 5.027 -22.096 -2.829 22.837 Atomic orbital electron populations 1.22167 0.87703 1.00178 1.00511 1.61752 1.07902 1.15128 1.41055 1.20007 0.95839 0.84843 0.94841 1.21252 1.34639 0.97379 1.01886 0.94640 1.25848 0.97047 0.98428 0.97723 1.70056 1.48844 1.13815 1.26558 0.85712 0.79226 0.78802 0.79181 1.19486 1.21175 1.16372 1.21144 1.02511 0.85673 0.93562 1.21215 0.86252 0.95297 0.85023 1.22613 1.11794 0.92214 1.09325 1.17152 0.81813 0.87619 0.78893 1.90920 1.39762 1.69826 1.45330 1.48304 1.36826 1.08513 1.23834 1.77972 1.31831 0.95857 1.16437 1.20315 0.87192 0.83224 0.88922 1.41173 1.55446 1.05505 1.31619 1.41921 1.47143 1.06008 1.28412 0.68557 1.20134 0.87222 0.88081 0.85482 1.67635 1.33140 0.99757 1.26536 0.92615 0.93065 0.94982 0.94204 0.98603 0.92572 0.87513 0.90416 0.80732 0.72295 0.72075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.18 127.69 1.17 2.82 16 2 N -0.53 -21.35 4.74 -931.64 -4.42 -25.77 16 3 C 0.17 7.80 3.79 85.56 0.32 8.12 16 4 C -0.51 -29.03 9.01 25.60 0.23 -28.80 16 5 H 0.04 2.27 7.37 -2.91 -0.02 2.25 16 6 C 0.01 0.36 5.47 84.66 0.46 0.83 16 7 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 8 Si 0.95 42.66 27.47 68.60 1.88 44.54 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 12 C 0.10 3.08 5.36 85.56 0.46 3.54 16 13 C 0.25 7.76 5.16 42.33 0.22 7.97 16 14 C -0.33 -10.27 9.71 22.66 0.22 -10.05 16 15 C 0.54 19.39 7.71 84.71 0.65 20.04 16 16 O -0.58 -24.81 17.96 -5.83 -0.10 -24.91 16 17 N -0.37 -11.32 3.78 -322.22 -1.22 -12.54 16 18 N -0.38 -9.80 12.63 -58.22 -0.74 -10.53 16 19 C 0.57 8.03 9.47 260.29 2.46 10.49 16 20 N -0.78 -1.35 9.06 -58.25 -0.53 -1.87 16 21 N -0.60 -8.70 6.17 -198.85 -1.23 -9.92 16 22 H 0.47 3.06 8.96 -92.71 -0.83 2.22 16 23 C 0.55 14.22 9.00 261.10 2.35 16.57 16 24 N -0.54 -16.17 10.37 -185.69 -1.93 -18.10 16 25 H 0.06 1.99 7.28 -2.39 -0.02 1.97 16 26 H 0.05 2.27 6.76 -2.39 -0.02 2.25 16 27 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.76 6.99 -2.39 -0.02 1.74 16 29 H 0.00 -0.16 7.55 -2.39 -0.02 -0.18 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.11 3.08 7.93 -2.39 -0.02 3.06 16 32 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 33 H 0.18 4.83 7.98 -2.91 -0.02 4.80 16 34 H 0.44 -2.49 8.95 -92.71 -0.83 -3.32 16 35 H 0.44 -0.18 8.95 -92.71 -0.83 -1.01 16 Total: -1.00 -86.17 303.83 -0.78 -86.96 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -1.37 Total: -0.69 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 8.56 Total: 31.53 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -9.75 Total: -137.43 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.10 Total: -24.91 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -86.17 -0.78 -86.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459605441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.463 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds