Wall clock time and date at job start Tue Mar 31 2020 00:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47412 * 240.00005 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99989 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46778 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46730 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46731 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46779 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00316 * 0.02562 * 13 12 11 15 15 N 1.34786 * 119.99869 * 180.02562 * 13 12 11 16 16 C 1.39505 * 119.99931 * 180.02562 * 15 13 12 17 17 N 1.30720 * 126.89268 * 359.40189 * 16 15 13 18 18 O 1.20916 * 111.47172 * 179.83560 * 17 16 15 19 19 C 1.34085 * 111.74566 * 0.45104 * 18 17 16 20 20 C 1.35248 * 106.60935 * 359.73028 * 19 18 17 21 21 C 1.50703 * 128.01806 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.50108 * 8.74602 * 21 20 19 23 23 C 1.52994 * 117.49985 * 300.08077 * 21 20 19 24 24 H 0.97009 * 119.99731 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47101 * 59.99874 * 9 7 2 26 26 H 1.09001 * 109.47047 * 299.99827 * 9 7 2 27 27 H 1.08991 * 109.47217 * 60.00061 * 10 9 7 28 28 H 1.09001 * 109.46939 * 299.99585 * 10 9 7 29 29 H 1.08999 * 109.46984 * 60.00398 * 11 10 9 30 30 H 1.08993 * 109.47314 * 299.99835 * 11 10 9 31 31 H 1.09004 * 109.47178 * 60.00491 * 12 11 10 32 32 H 1.08993 * 109.47411 * 300.00173 * 12 11 10 33 33 H 0.96996 * 119.99695 * 359.72075 * 15 13 12 34 34 H 1.07998 * 126.69162 * 179.70593 * 19 18 17 35 35 H 1.09003 * 115.54656 * 154.41645 * 21 20 19 36 36 H 1.08995 * 117.49524 * 359.97438 * 22 21 20 37 37 H 1.08999 * 117.49766 * 145.02255 * 22 21 20 38 38 H 1.08999 * 117.49836 * 214.98127 * 23 21 20 39 39 H 1.08998 * 117.49837 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4550 -0.0005 14 8 0.5082 -7.4550 -0.0005 15 7 2.3948 -8.6223 -0.0005 16 6 1.6972 -9.8304 -0.0011 17 7 0.3995 -9.9873 0.0093 18 8 0.0951 -11.1575 0.0023 19 6 1.1753 -11.9518 -0.0042 20 6 2.2545 -11.1367 -0.0066 21 6 3.7107 -11.5247 -0.0142 22 6 4.0472 -13.0021 -0.2263 23 6 4.2235 -12.3672 1.1554 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 0.8533 -5.0450 -0.8897 30 1 0.8538 -5.0446 0.8903 31 1 3.1017 -6.0922 0.8891 32 1 3.1004 -6.0923 -0.8909 33 1 3.3647 -8.6223 -0.0046 34 1 1.1821 -13.0318 -0.0065 35 1 4.3915 -10.7873 -0.4398 36 1 3.2152 -13.6935 -0.3599 37 1 4.9494 -13.2367 -0.7910 38 1 5.2416 -12.1845 1.4990 39 1 3.5074 -12.6412 1.9302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462555450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:33 Heat of formation + Delta-G solvation = 10.494483 kcal Electronic energy + Delta-G solvation = -20326.085980 eV Core-core repulsion = 17043.496802 eV Total energy + Delta-G solvation = -3282.589178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -45.95925 -41.12004 -38.54150 -36.90651 -36.37513 -34.66387 -33.21397 -32.33460 -31.35879 -27.71370 -25.65030 -25.08389 -23.41511 -23.01433 -22.00185 -21.68163 -20.65722 -19.60798 -18.67707 -18.42060 -17.94075 -17.29500 -17.01008 -16.51455 -16.26643 -15.66729 -15.39034 -15.09508 -14.66051 -14.49437 -13.97205 -13.64500 -13.33624 -13.04256 -12.86457 -12.75686 -12.45233 -12.38861 -12.29897 -12.19661 -12.17508 -11.96771 -11.41402 -11.40060 -11.29527 -11.20483 -10.94315 -10.55216 -10.19742 -9.77775 -8.19144 -6.31735 0.53426 0.86768 1.39884 1.44235 1.52057 1.61475 1.78686 2.41487 2.44048 2.98551 3.13469 3.21429 3.47074 3.71821 3.93284 4.00310 4.03739 4.09406 4.16058 4.27173 4.52626 4.61625 4.64416 4.76902 4.83661 4.84948 4.91378 5.07871 5.14135 5.21297 5.27245 5.31167 5.31463 5.36110 5.55271 5.76322 5.86971 6.14299 6.24010 6.86824 6.93298 7.38004 7.47306 8.93013 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040566 B = 0.002472 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.060190 B =11325.772933 C =11917.305277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.119 4.119 13 C 0.503 3.497 14 O -0.546 6.546 15 N -0.622 5.622 16 C 0.225 3.775 17 N -0.404 5.404 18 O 0.088 5.912 19 C -0.038 4.038 20 C -0.180 4.180 21 C -0.100 4.100 22 C -0.158 4.158 23 C -0.167 4.167 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.017 1.017 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.441 0.559 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.237 -30.781 0.226 33.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.020 4.020 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.158 4.158 13 C 0.291 3.709 14 O -0.419 6.419 15 N -0.278 5.278 16 C -0.025 4.025 17 N -0.119 5.119 18 O 0.027 5.973 19 C -0.119 4.119 20 C -0.186 4.186 21 C -0.118 4.118 22 C -0.194 4.194 23 C -0.204 4.204 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.282 0.718 34 H 0.277 0.723 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.183 -29.790 0.244 32.186 hybrid contribution 0.655 0.845 -0.009 1.069 sum 12.838 -28.945 0.236 31.665 Atomic orbital electron populations 1.70139 1.08158 1.27825 1.51842 1.26134 0.95792 1.03882 0.94789 0.85411 0.78130 0.77546 0.79404 1.18802 1.21190 1.18816 1.21725 0.93806 0.92111 1.50305 0.91345 1.19065 0.94743 0.93965 0.94217 1.21432 0.97760 0.92245 1.01675 1.21282 0.97538 0.93832 1.01038 1.21690 0.98829 0.87505 1.07754 1.21823 0.88243 0.86405 0.74382 1.90809 1.16366 1.87462 1.47301 1.42763 1.11127 1.01018 1.72877 1.20948 0.89083 0.88899 1.03580 1.74512 1.15194 0.97591 1.24601 1.84889 1.33588 1.10726 1.68067 1.26402 0.83722 1.00755 1.01051 1.20416 0.97869 0.88505 1.11790 1.20202 0.88372 0.96750 1.06485 1.23197 1.04476 0.92590 0.99162 1.23187 1.03117 1.02348 0.91756 0.92873 0.99864 0.99881 0.91682 0.91664 0.93975 0.93983 0.85183 0.85159 0.71752 0.72322 0.85631 0.87334 0.86781 0.87019 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.94 13.29 21.45 0.28 -59.65 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.09 -3.80 5.15 30.60 0.16 -3.65 16 11 C -0.10 -3.61 4.50 30.60 0.14 -3.48 16 12 C -0.12 -2.86 5.70 29.85 0.17 -2.69 16 13 C 0.50 14.82 7.79 87.65 0.68 15.50 16 14 O -0.55 -22.72 14.75 -3.01 -0.04 -22.76 16 15 N -0.62 -13.51 5.42 -309.52 -1.68 -15.19 16 16 C 0.22 5.61 7.90 134.10 1.06 6.67 16 17 N -0.40 -12.87 10.39 -56.32 -0.59 -13.45 16 18 O 0.09 2.12 11.19 71.22 0.80 2.92 16 19 C -0.04 -0.53 11.67 67.13 0.78 0.26 16 20 C -0.18 -2.83 5.99 -19.62 -0.12 -2.94 16 21 C -0.10 -0.86 6.32 -11.54 -0.07 -0.93 16 22 C -0.16 -0.67 10.06 30.62 0.31 -0.37 16 23 C -0.17 -1.01 10.24 30.62 0.31 -0.69 16 24 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.44 5.20 8.82 -92.71 -0.82 4.38 16 34 H 0.26 0.63 7.37 -2.91 -0.02 0.61 16 35 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.21 7.18 -2.39 -0.02 0.19 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -86.48 337.81 5.30 -81.18 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 0.24 Total: 2.49 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.27 Total: -22.62 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.98 Total: -88.29 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.75 Total: -19.84 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -86.48 5.30 -81.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462555450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.671 kcal (2) G-P(sol) polarization free energy of solvation -86.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds