Wall clock time and date at job start Tue Mar 31 2020 00:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00591 * 2 1 4 4 H 1.48509 * 109.46728 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47262 * 119.99531 * 3 2 1 6 6 H 1.48495 * 109.47319 * 240.00158 * 3 2 1 7 7 C 1.38819 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99855 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49544 * 304.93656 * 11 10 9 13 13 C 1.53046 * 109.49507 * 184.84031 * 11 10 9 14 14 C 1.53043 * 109.53282 * 178.68607 * 13 11 10 15 15 C 1.53191 * 109.31478 * 61.36262 * 14 13 11 16 16 N 1.46922 * 108.77506 * 305.36056 * 15 14 13 17 17 C 1.34777 * 120.63393 * 233.58401 * 16 15 14 18 18 O 1.21693 * 119.99907 * 172.67075 * 17 16 15 19 19 C 1.46656 * 119.99660 * 352.67654 * 17 16 15 20 20 C 1.36546 * 125.98735 * 172.39827 * 19 17 16 21 21 C 1.40361 * 106.70857 * 179.97438 * 20 19 17 22 22 C 1.35124 * 107.11566 * 359.97438 * 21 20 19 23 23 O 1.33930 * 108.76733 * 359.75817 * 22 21 20 24 24 C 1.46926 * 118.73827 * 53.61264 * 16 15 14 25 25 H 0.96999 * 120.00385 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00709 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47333 * 299.99646 * 10 9 7 28 28 H 1.08998 * 109.47111 * 59.99862 * 10 9 7 29 29 H 1.08999 * 109.45564 * 298.69729 * 13 11 10 30 30 H 1.08996 * 109.46065 * 58.66527 * 13 11 10 31 31 H 1.08998 * 109.49520 * 301.40789 * 14 13 11 32 32 H 1.09001 * 109.51872 * 181.32985 * 14 13 11 33 33 H 1.09004 * 109.58438 * 185.57492 * 15 14 13 34 34 H 1.08999 * 109.70628 * 65.22400 * 15 14 13 35 35 H 1.08006 * 126.64237 * 359.97438 * 20 19 17 36 36 H 1.08002 * 126.44187 * 179.97438 * 21 20 19 37 37 H 1.08001 * 125.61820 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.58799 * 186.59793 * 24 16 15 39 39 H 1.09008 * 109.58972 * 66.17448 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3803 -4.7136 0.8438 13 6 1.8243 -6.1421 0.1229 14 6 0.8288 -7.3040 0.1566 15 6 0.0295 -7.3244 -1.1501 16 7 -0.5883 -6.0060 -1.3472 17 6 -1.9143 -5.8940 -1.5612 18 8 -2.4352 -4.7946 -1.5900 19 6 -2.7292 -7.0971 -1.7591 20 6 -4.0917 -7.1392 -1.8389 21 6 -4.4434 -8.4844 -2.0303 22 6 -3.2948 -9.1956 -2.0592 23 8 -2.2638 -8.3554 -1.9012 24 6 0.2670 -4.8120 -1.3073 25 1 -0.4851 -0.8400 0.0004 26 1 0.3554 -2.3881 0.0005 27 1 2.6846 -3.7146 -0.8895 28 1 2.6846 -3.7146 0.8905 29 1 2.4893 -6.2585 -0.7328 30 1 2.4114 -6.1401 1.0413 31 1 0.1476 -7.1751 0.9978 32 1 1.3696 -8.2439 0.2671 33 1 -0.7473 -8.0869 -1.0914 34 1 0.6951 -7.5446 -1.9847 35 1 -4.7677 -6.2998 -1.7683 36 1 -5.4440 -8.8773 -2.1348 37 1 -3.2202 -10.2648 -2.1918 38 1 -0.3531 -3.9167 -1.3523 39 1 0.9540 -4.8261 -2.1534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480270683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:35 Heat of formation + Delta-G solvation = -2.013145 kcal Electronic energy + Delta-G solvation = -21803.489059 eV Core-core repulsion = 18520.357510 eV Total energy + Delta-G solvation = -3283.131549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.94632 -39.94502 -37.67378 -35.15767 -33.48843 -32.93681 -31.78491 -30.33769 -29.34570 -25.83514 -25.31658 -23.13065 -22.73904 -21.98647 -21.48591 -20.38622 -19.60085 -17.72598 -17.17617 -16.85659 -16.49210 -15.92466 -15.10016 -14.70221 -14.47117 -14.36908 -13.88115 -13.54196 -13.42407 -13.29668 -13.14907 -12.96940 -12.78981 -12.50605 -12.44616 -11.52828 -11.12030 -10.79672 -10.67907 -10.63702 -10.47426 -10.26635 -10.23649 -10.08379 -9.89965 -9.09167 -8.97585 -8.82610 -8.55736 -6.93448 -6.01989 -3.02299 0.91236 2.15198 2.43696 2.99881 3.16892 3.56073 3.60379 3.78067 4.31508 4.63384 4.68040 4.73661 4.82007 4.88417 4.96262 5.13304 5.29058 5.30323 5.49565 5.54573 5.58767 5.69050 5.72054 5.79042 5.86612 5.89176 6.00399 6.05289 6.09554 6.10739 6.33147 6.40743 6.52094 6.65543 6.71534 6.81359 7.34602 7.87039 8.05140 8.83840 9.30888 10.17190 10.32015 11.46329 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.004066 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.605747 B = 6884.228395 C = 7797.632547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.745 5.745 10 C 0.167 3.833 11 C -0.109 4.109 12 H 0.074 0.926 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.096 3.904 16 N -0.602 5.602 17 C 0.595 3.405 18 O -0.511 6.511 19 C -0.069 4.069 20 C -0.124 4.124 21 C -0.222 4.222 22 C -0.022 4.022 23 O -0.159 6.159 24 C 0.121 3.879 25 H 0.257 0.743 26 H 0.368 0.632 27 H 0.021 0.979 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.208 0.792 38 H 0.101 0.899 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 -23.558 -3.343 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.243 4.243 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.391 5.391 10 C 0.039 3.961 11 C -0.128 4.128 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.170 4.170 15 C -0.026 4.026 16 N -0.334 5.334 17 C 0.382 3.618 18 O -0.388 6.388 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.241 4.241 22 C -0.091 4.091 23 O -0.055 6.055 24 C 0.000 4.000 25 H 0.068 0.932 26 H 0.202 0.798 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.224 0.776 38 H 0.120 0.880 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.379 -21.339 -3.358 21.864 hybrid contribution -0.263 -1.909 -0.001 1.927 sum -3.641 -23.248 -3.359 23.770 Atomic orbital electron populations 1.70854 1.06007 1.28635 1.53176 1.25783 0.97073 1.00979 1.00440 0.83239 0.74175 0.75660 0.75762 1.21032 1.22338 1.22310 1.20006 0.91952 0.85855 1.48814 0.91830 1.42425 1.04964 1.00932 1.90754 1.20566 0.92814 0.84605 0.98160 1.21720 0.98016 0.95423 0.97677 0.90791 1.21529 0.97488 0.93580 1.02454 1.21909 0.98515 0.99198 0.97413 1.22143 0.98207 0.84347 0.97916 1.48068 1.06498 1.08757 1.70080 1.16754 0.81388 0.86016 0.77670 1.90947 1.71354 1.24968 1.51483 1.22221 0.93962 0.83202 1.12688 1.22015 0.93730 0.98239 1.00474 1.21850 0.99980 0.93293 1.08986 1.24491 0.85213 0.96415 1.02989 1.84241 1.35308 1.16407 1.69562 1.21797 0.93178 0.87434 0.97609 0.93214 0.79817 0.96116 0.95926 0.91632 0.91365 0.91545 0.90676 0.88153 0.91193 0.82191 0.82720 0.77571 0.88030 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.44 13.70 55.49 0.76 -29.68 16 2 C -0.04 -1.35 5.50 -17.43 -0.10 -1.45 16 3 Si 1.08 26.76 29.92 -169.99 -5.09 21.68 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.34 -9.83 9.99 -15.06 -0.15 -9.98 16 8 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.74 -19.58 5.37 -59.91 -0.32 -19.90 16 10 C 0.17 3.44 5.65 -4.04 -0.02 3.42 16 11 C -0.11 -1.82 2.38 -90.50 -0.21 -2.03 16 12 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.41 5.17 -26.68 -0.14 -1.55 16 14 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 15 C 0.10 1.08 6.10 -3.71 -0.02 1.06 16 16 N -0.60 -9.07 2.97 -174.32 -0.52 -9.59 16 17 C 0.59 9.91 7.65 -12.86 -0.10 9.81 16 18 O -0.51 -10.56 16.30 5.19 0.08 -10.47 16 19 C -0.07 -0.93 6.76 -36.80 -0.25 -1.18 16 20 C -0.12 -1.48 10.63 -39.39 -0.42 -1.90 16 21 C -0.22 -1.93 10.87 -39.89 -0.43 -2.37 16 22 C -0.02 -0.17 12.08 29.62 0.36 0.19 16 23 O -0.16 -1.68 7.27 5.01 0.04 -1.64 16 24 C 0.12 2.09 5.53 -3.71 -0.02 2.07 16 25 H 0.26 8.29 6.77 -40.82 -0.28 8.02 16 26 H 0.37 10.08 5.72 -40.82 -0.23 9.85 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.04 4.26 -52.93 -0.23 0.81 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.10 2.14 6.20 -51.93 -0.32 1.81 16 39 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -35.54 319.47 -7.24 -42.77 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.34 Total: 7.49 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.67 Total: -5.47 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.08 Total: -59.17 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.12 Total: -12.12 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.09 Total: 21.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.54 -7.24 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480270683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds