Wall clock time and date at job start Tue Mar 31 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00591 * 2 1 4 4 H 1.48509 * 109.46728 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47262 * 119.99531 * 3 2 1 6 6 H 1.48495 * 109.47319 * 240.00158 * 3 2 1 7 7 C 1.38819 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99855 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49544 * 304.93656 * 11 10 9 13 13 C 1.53046 * 109.49507 * 184.84031 * 11 10 9 14 14 C 1.53043 * 109.53282 * 178.68607 * 13 11 10 15 15 C 1.53191 * 109.31478 * 61.36262 * 14 13 11 16 16 N 1.46922 * 108.77506 * 305.36056 * 15 14 13 17 17 C 1.34777 * 120.63393 * 233.58401 * 16 15 14 18 18 O 1.21693 * 119.99907 * 172.67075 * 17 16 15 19 19 C 1.46656 * 119.99660 * 352.67654 * 17 16 15 20 20 C 1.36546 * 125.98735 * 172.39827 * 19 17 16 21 21 C 1.40361 * 106.70857 * 179.97438 * 20 19 17 22 22 C 1.35124 * 107.11566 * 359.97438 * 21 20 19 23 23 O 1.33930 * 108.76733 * 359.75817 * 22 21 20 24 24 C 1.46926 * 118.73827 * 53.61264 * 16 15 14 25 25 H 0.96999 * 120.00385 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00709 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47333 * 299.99646 * 10 9 7 28 28 H 1.08998 * 109.47111 * 59.99862 * 10 9 7 29 29 H 1.08999 * 109.45564 * 298.69729 * 13 11 10 30 30 H 1.08996 * 109.46065 * 58.66527 * 13 11 10 31 31 H 1.08998 * 109.49520 * 301.40789 * 14 13 11 32 32 H 1.09001 * 109.51872 * 181.32985 * 14 13 11 33 33 H 1.09004 * 109.58438 * 185.57492 * 15 14 13 34 34 H 1.08999 * 109.70628 * 65.22400 * 15 14 13 35 35 H 1.08006 * 126.64237 * 359.97438 * 20 19 17 36 36 H 1.08002 * 126.44187 * 179.97438 * 21 20 19 37 37 H 1.08001 * 125.61820 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.58799 * 186.59793 * 24 16 15 39 39 H 1.09008 * 109.58972 * 66.17448 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3803 -4.7136 0.8438 13 6 1.8243 -6.1421 0.1229 14 6 0.8288 -7.3040 0.1566 15 6 0.0295 -7.3244 -1.1501 16 7 -0.5883 -6.0060 -1.3472 17 6 -1.9143 -5.8940 -1.5612 18 8 -2.4352 -4.7946 -1.5900 19 6 -2.7292 -7.0971 -1.7591 20 6 -4.0917 -7.1392 -1.8389 21 6 -4.4434 -8.4844 -2.0303 22 6 -3.2948 -9.1956 -2.0592 23 8 -2.2638 -8.3554 -1.9012 24 6 0.2670 -4.8120 -1.3073 25 1 -0.4851 -0.8400 0.0004 26 1 0.3554 -2.3881 0.0005 27 1 2.6846 -3.7146 -0.8895 28 1 2.6846 -3.7146 0.8905 29 1 2.4893 -6.2585 -0.7328 30 1 2.4114 -6.1401 1.0413 31 1 0.1476 -7.1751 0.9978 32 1 1.3696 -8.2439 0.2671 33 1 -0.7473 -8.0869 -1.0914 34 1 0.6951 -7.5446 -1.9847 35 1 -4.7677 -6.2998 -1.7683 36 1 -5.4440 -8.8773 -2.1348 37 1 -3.2202 -10.2648 -2.1918 38 1 -0.3531 -3.9167 -1.3523 39 1 0.9540 -4.8261 -2.1534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480270683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:34 Heat of formation + Delta-G solvation = -26.858390 kcal Electronic energy + Delta-G solvation = -21804.566430 eV Core-core repulsion = 18520.357510 eV Total energy + Delta-G solvation = -3284.208920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.76323 -41.17177 -39.01156 -36.95005 -34.80509 -34.04768 -33.17265 -31.68563 -30.70732 -27.19696 -26.79343 -25.04025 -23.76576 -22.92456 -22.68323 -21.55920 -20.72254 -19.36979 -18.72224 -17.84230 -17.46214 -17.11437 -16.63808 -16.22913 -15.92618 -15.63699 -15.42457 -15.20015 -14.54192 -14.36863 -14.16826 -14.11567 -13.90015 -13.87461 -13.56401 -13.00008 -12.71396 -12.53787 -12.17282 -11.94320 -11.92543 -11.77960 -11.63817 -11.38853 -11.17841 -11.03334 -10.96317 -9.99235 -9.59330 -9.15194 -8.43045 -5.37256 -0.03115 1.39863 1.47639 1.55886 1.67583 1.83790 1.92754 2.08017 2.70643 3.37574 3.38568 3.59846 3.75533 3.78443 3.90841 3.98184 4.01544 4.09554 4.19757 4.32329 4.45531 4.61301 4.64593 4.67284 4.77784 4.80728 4.86081 4.91487 4.95918 5.03979 5.11827 5.22747 5.32844 5.38436 5.44839 5.55171 5.82196 6.21040 6.43074 6.83029 7.04966 7.94972 8.08154 9.07950 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.004066 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.605747 B = 6884.228395 C = 7797.632547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.109 4.109 3 Si 1.133 2.867 4 H -0.294 1.294 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.072 0.928 9 N -0.761 5.761 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.050 0.950 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.091 3.909 16 N -0.600 5.600 17 C 0.585 3.415 18 O -0.574 6.574 19 C -0.104 4.104 20 C -0.128 4.128 21 C -0.233 4.233 22 C 0.012 3.988 23 O -0.158 6.158 24 C 0.127 3.873 25 H 0.239 0.761 26 H 0.357 0.643 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -27.227 -3.619 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.299 4.299 3 Si 0.956 3.044 4 H -0.220 1.220 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.090 0.910 9 N -0.406 5.406 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.068 0.932 13 C -0.144 4.144 14 C -0.163 4.163 15 C -0.029 4.029 16 N -0.330 5.330 17 C 0.375 3.625 18 O -0.455 6.455 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.251 4.251 22 C -0.057 4.057 23 O -0.054 6.054 24 C 0.005 3.995 25 H 0.049 0.951 26 H 0.189 0.811 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.202 0.798 37 H 0.278 0.722 38 H 0.070 0.930 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.879 -25.100 -3.627 25.431 hybrid contribution -0.742 -0.955 0.058 1.211 sum -2.621 -26.055 -3.568 26.429 Atomic orbital electron populations 1.70989 1.07400 1.27637 1.56236 1.27405 0.97020 1.05107 1.00397 0.82594 0.73305 0.71129 0.77349 1.22013 1.19977 1.20063 1.20445 0.92527 0.87067 1.46864 0.91027 1.42712 1.04724 1.02366 1.90759 1.20774 0.93451 0.83738 0.98265 1.21573 0.97026 0.96630 0.96297 0.93170 1.21524 0.97725 0.91369 1.03754 1.21909 0.97913 0.99995 0.96438 1.22486 0.98946 0.82343 0.99146 1.48160 1.06037 1.09533 1.69300 1.17257 0.81896 0.86562 0.76756 1.90898 1.72607 1.27587 1.54456 1.21502 0.93698 0.83495 1.16844 1.22251 0.93311 0.99955 0.99394 1.22191 1.02051 0.91461 1.09409 1.25580 0.83829 0.97861 0.98418 1.84190 1.36237 1.15377 1.69645 1.21494 0.92750 0.87013 0.98276 0.95066 0.81150 0.95379 0.95461 0.89975 0.90269 0.92652 0.86580 0.86703 0.89153 0.83373 0.79837 0.72214 0.93000 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.78 13.70 21.65 0.30 -65.49 16 2 C -0.11 -6.70 5.50 84.86 0.47 -6.24 16 3 Si 1.13 54.38 29.92 68.60 2.05 56.43 16 4 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.34 -20.19 9.99 84.04 0.84 -19.35 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.76 -41.72 5.37 -343.44 -1.85 -43.56 16 10 C 0.16 6.88 5.65 86.38 0.49 7.37 16 11 C -0.10 -3.26 2.38 -10.71 -0.03 -3.29 16 12 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.11 -2.42 5.17 30.62 0.16 -2.26 16 14 C -0.12 -2.26 6.08 30.67 0.19 -2.07 16 15 C 0.09 1.84 6.10 86.36 0.53 2.37 16 16 N -0.60 -18.55 2.97 -823.64 -2.45 -21.00 16 17 C 0.59 20.81 7.65 86.44 0.66 21.47 16 18 O -0.57 -26.32 16.30 -4.33 -0.07 -26.39 16 19 C -0.10 -2.81 6.76 24.07 0.16 -2.64 16 20 C -0.13 -3.07 10.63 22.39 0.24 -2.84 16 21 C -0.23 -3.37 10.87 22.07 0.24 -3.13 16 22 C 0.01 0.13 12.08 67.10 0.81 0.94 16 23 O -0.16 -2.91 7.27 -5.00 -0.04 -2.95 16 24 C 0.13 4.63 5.53 86.36 0.48 5.11 16 25 H 0.24 16.50 6.77 -92.71 -0.63 15.87 16 26 H 0.36 21.01 5.72 -92.71 -0.53 20.48 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 2.04 4.26 -18.32 -0.08 1.96 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.26 -0.20 8.06 -2.91 -0.02 -0.22 16 38 H 0.05 2.42 6.20 -2.39 -0.01 2.40 16 39 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -84.05 319.47 3.78 -80.27 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.60 Total: 27.23 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.23 Total: -4.55 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -4.00 Total: -130.05 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.11 Total: -29.34 kcal Atomic # 14 Polarization: 54.38 SS G_CDS: 2.05 Total: 56.43 kcal Total: -84.05 3.78 -80.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480270683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.409 kcal (2) G-P(sol) polarization free energy of solvation -84.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds