Wall clock time and date at job start Tue Mar 31 2020 00:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48502 * 109.46853 * 274.80649 * 3 2 1 5 5 H 1.48497 * 109.47179 * 34.80631 * 3 2 1 6 6 H 1.48496 * 109.47153 * 154.80845 * 3 2 1 7 7 C 1.38819 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99983 * 172.49948 * 7 2 1 9 9 N 1.36933 * 119.99623 * 352.77041 * 7 2 1 10 10 C 1.47063 * 136.06263 * 352.79306 * 9 7 2 11 11 C 1.53489 * 87.98878 * 207.08610 * 10 9 7 12 12 C 1.47066 * 136.05329 * 172.42701 * 9 7 2 13 13 H 1.09003 * 113.46754 * 267.69353 * 12 9 7 14 14 C 1.53001 * 113.47137 * 38.13050 * 12 9 7 15 15 N 1.46497 * 109.47130 * 285.49632 * 14 12 9 16 16 C 1.34778 * 120.00059 * 179.97438 * 15 14 12 17 17 O 1.21277 * 119.99658 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00211 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47282 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47388 * 180.02562 * 19 18 16 21 21 C 1.34508 * 125.79229 * 89.70760 * 20 19 18 22 22 C 1.41389 * 106.84239 * 179.89241 * 21 20 19 23 23 C 1.34518 * 106.83831 * 0.37630 * 22 21 20 24 24 O 1.34297 * 125.78574 * 270.02571 * 20 19 18 25 25 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.09001 * 113.47007 * 321.86708 * 10 9 7 27 27 H 1.08996 * 113.46719 * 92.24291 * 10 9 7 28 28 H 1.09002 * 114.21182 * 87.51724 * 11 10 9 29 29 H 1.09007 * 114.20854 * 220.15173 * 11 10 9 30 30 H 1.08994 * 109.46894 * 45.49809 * 14 12 9 31 31 H 1.09000 * 109.47212 * 165.49879 * 14 12 9 32 32 H 0.97004 * 120.00014 * 0.02562 * 15 14 12 33 33 H 1.09003 * 109.47306 * 300.00528 * 18 16 15 34 34 H 1.09002 * 109.47588 * 60.00049 * 18 16 15 35 35 H 1.08999 * 109.46716 * 299.99622 * 19 18 16 36 36 H 1.09000 * 109.47212 * 60.00129 * 19 18 16 37 37 H 1.08004 * 126.57869 * 0.03658 * 21 20 19 38 38 H 1.07999 * 126.57874 * 180.16883 * 22 21 20 39 39 H 1.07989 * 125.79029 * 179.75146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3962 2.1050 -1.3952 5 1 1.5023 2.6212 0.7992 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0832 -1.2062 -0.1226 9 7 1.3336 -2.3834 0.1482 10 6 -0.0489 -2.7806 0.4541 11 6 0.5127 -4.0817 1.0437 12 6 1.6684 -3.8131 0.0659 13 1 1.5076 -4.2403 -0.9240 14 6 3.0460 -4.1504 0.6398 15 7 4.0854 -3.7053 -0.2916 16 6 5.3854 -3.8984 0.0070 17 8 5.6946 -4.4411 1.0466 18 6 6.4547 -3.4400 -0.9507 19 6 7.8323 -3.7774 -0.3768 20 6 8.9017 -3.3184 -1.3343 21 6 9.4859 -2.1068 -1.3392 22 6 10.4257 -2.1094 -2.3956 23 6 10.3535 -3.3197 -2.9784 24 8 9.4287 -4.0477 -2.3313 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5307 -2.1413 1.1939 27 1 -0.6628 -2.9345 -0.4333 28 1 0.7884 -4.0132 2.0961 29 1 -0.0754 -4.9691 0.8093 30 1 3.1746 -3.6446 1.5967 31 1 3.1253 -5.2278 0.7848 32 1 3.8381 -3.2708 -1.1229 33 1 6.3264 -3.9457 -1.9078 34 1 6.3751 -2.3626 -1.0957 35 1 7.9608 -3.2719 0.5803 36 1 7.9117 -4.8549 -0.2323 37 1 9.2788 -1.2897 -0.6640 38 1 11.0743 -1.2948 -2.6819 39 1 10.9394 -3.6497 -3.8233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483629497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:55 Heat of formation + Delta-G solvation = 26.264511 kcal Electronic energy + Delta-G solvation = -21024.749681 eV Core-core repulsion = 17742.844343 eV Total energy + Delta-G solvation = -3281.905338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.66288 -39.48974 -38.11630 -34.24782 -33.92042 -32.88007 -32.25002 -29.34294 -28.03814 -27.43871 -24.39015 -23.50220 -21.87834 -21.83958 -20.49549 -20.06162 -19.21779 -17.62039 -16.99948 -16.39080 -16.04438 -15.70097 -15.54500 -15.04404 -14.53298 -14.14550 -13.71951 -13.57767 -13.20530 -12.94246 -12.86009 -12.67521 -12.40965 -12.11323 -11.82405 -11.53106 -11.21226 -11.12775 -11.00640 -10.79047 -10.58307 -10.06361 -10.03696 -9.87644 -9.66059 -9.22831 -8.81287 -8.57683 -8.55239 -6.93672 -5.82806 -3.13715 1.60410 2.49827 2.86045 2.93473 3.34536 3.40860 3.42626 3.59371 4.40022 4.56332 4.85684 4.88004 4.94440 5.06927 5.13668 5.24842 5.36674 5.49651 5.54352 5.64688 5.70290 5.73852 5.86737 5.89558 5.91291 6.05558 6.09306 6.29602 6.37971 6.39459 6.56639 6.71240 6.88757 7.03261 7.17191 7.35957 7.50083 7.88655 7.92262 8.54225 8.98441 9.65939 10.60093 11.35642 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.004148 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.099207 B = 6748.255190 C = 8069.062335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.158 3.842 11 C -0.162 4.162 12 C 0.125 3.875 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.554 6.554 18 C -0.139 4.139 19 C -0.023 4.023 20 C -0.005 4.005 21 C -0.212 4.212 22 C -0.213 4.213 23 C -0.049 4.049 24 O -0.177 6.177 25 H 0.254 0.746 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.404 0.596 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.302 -7.750 -4.625 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.344 4.344 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.033 3.967 11 C -0.201 4.201 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.363 5.363 16 C 0.297 3.703 17 O -0.434 6.434 18 C -0.179 4.179 19 C -0.061 4.061 20 C -0.056 4.056 21 C -0.231 4.231 22 C -0.232 4.232 23 C -0.116 4.116 24 O -0.073 6.073 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.239 0.761 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.442 -8.049 -3.962 17.001 hybrid contribution 0.401 1.562 -0.734 1.772 sum 14.843 -6.487 -4.696 16.865 Atomic orbital electron populations 1.69854 1.05036 1.25393 1.56014 1.24816 0.95596 0.97567 1.02309 0.86183 0.78836 0.83756 0.77493 1.21640 1.21570 1.20538 1.18870 0.90364 0.81522 1.43678 0.90163 1.45807 1.06398 0.98617 1.81787 1.21898 0.88351 0.89976 0.96514 1.23698 0.98083 0.99081 0.99207 1.22459 0.91493 0.87945 0.96338 0.93545 1.21783 0.86804 0.98209 0.93475 1.45991 1.05493 1.60556 1.24223 1.20439 0.83710 0.79006 0.87130 1.90670 1.82426 1.43956 1.26305 1.21664 0.92787 1.03997 0.99473 1.19850 0.87865 1.03534 0.94802 1.22542 0.99573 0.91304 0.92136 1.21663 1.00701 0.98259 1.02458 1.21848 1.03323 0.98820 0.99199 1.23998 0.95328 0.91920 1.00380 1.84023 1.44120 1.41767 1.37370 0.93646 0.92267 0.95271 0.90214 0.92264 0.91155 0.92298 0.76108 0.88727 0.88281 0.87961 0.89311 0.83374 0.83574 0.78273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 11.87 55.49 0.66 -26.05 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.69 29.56 -169.99 -5.02 16.66 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.22 -5.73 10.54 -15.06 -0.16 -5.88 16 8 H 0.08 2.02 7.62 -52.49 -0.40 1.62 16 9 N -0.60 -14.40 3.63 -176.87 -0.64 -15.05 16 10 C 0.16 3.58 7.19 -8.52 -0.06 3.52 16 11 C -0.16 -2.88 8.04 -26.09 -0.21 -3.09 16 12 C 0.13 2.37 4.11 -72.27 -0.30 2.07 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.16 5.53 -4.04 -0.02 2.13 16 15 N -0.71 -11.69 5.33 -60.30 -0.32 -12.01 16 16 C 0.51 8.12 7.83 -10.99 -0.09 8.04 16 17 O -0.55 -10.50 15.98 5.56 0.09 -10.42 16 18 C -0.14 -1.70 5.68 -27.89 -0.16 -1.86 16 19 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 20 C -0.01 -0.06 6.57 -35.62 -0.23 -0.30 16 21 C -0.21 -2.42 10.81 -39.70 -0.43 -2.85 16 22 C -0.21 -2.14 10.91 -39.70 -0.43 -2.58 16 23 C -0.05 -0.46 12.09 29.42 0.36 -0.11 16 24 O -0.18 -2.11 10.65 5.71 0.06 -2.05 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.06 1.48 7.65 -51.93 -0.40 1.08 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 29 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 6.35 8.47 -40.82 -0.35 6.00 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -32.29 335.73 -7.86 -40.15 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.77 Total: 5.26 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.97 Total: -1.57 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.30 Total: -53.10 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.15 Total: -12.46 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.29 -7.86 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.413 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds