Wall clock time and date at job start Tue Mar 31 2020 00:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48502 * 109.46853 * 274.80649 * 3 2 1 5 5 H 1.48497 * 109.47179 * 34.80631 * 3 2 1 6 6 H 1.48496 * 109.47153 * 154.80845 * 3 2 1 7 7 C 1.38819 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99983 * 172.49948 * 7 2 1 9 9 N 1.36933 * 119.99623 * 352.77041 * 7 2 1 10 10 C 1.47063 * 136.06263 * 352.79306 * 9 7 2 11 11 C 1.53489 * 87.98878 * 207.08610 * 10 9 7 12 12 C 1.47066 * 136.05329 * 172.42701 * 9 7 2 13 13 H 1.09003 * 113.46754 * 267.69353 * 12 9 7 14 14 C 1.53001 * 113.47137 * 38.13050 * 12 9 7 15 15 N 1.46497 * 109.47130 * 285.49632 * 14 12 9 16 16 C 1.34778 * 120.00059 * 179.97438 * 15 14 12 17 17 O 1.21277 * 119.99658 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00211 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47282 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47388 * 180.02562 * 19 18 16 21 21 C 1.34508 * 125.79229 * 89.70760 * 20 19 18 22 22 C 1.41389 * 106.84239 * 179.89241 * 21 20 19 23 23 C 1.34518 * 106.83831 * 0.37630 * 22 21 20 24 24 O 1.34297 * 125.78574 * 270.02571 * 20 19 18 25 25 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.09001 * 113.47007 * 321.86708 * 10 9 7 27 27 H 1.08996 * 113.46719 * 92.24291 * 10 9 7 28 28 H 1.09002 * 114.21182 * 87.51724 * 11 10 9 29 29 H 1.09007 * 114.20854 * 220.15173 * 11 10 9 30 30 H 1.08994 * 109.46894 * 45.49809 * 14 12 9 31 31 H 1.09000 * 109.47212 * 165.49879 * 14 12 9 32 32 H 0.97004 * 120.00014 * 0.02562 * 15 14 12 33 33 H 1.09003 * 109.47306 * 300.00528 * 18 16 15 34 34 H 1.09002 * 109.47588 * 60.00049 * 18 16 15 35 35 H 1.08999 * 109.46716 * 299.99622 * 19 18 16 36 36 H 1.09000 * 109.47212 * 60.00129 * 19 18 16 37 37 H 1.08004 * 126.57869 * 0.03658 * 21 20 19 38 38 H 1.07999 * 126.57874 * 180.16883 * 22 21 20 39 39 H 1.07989 * 125.79029 * 179.75146 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3962 2.1050 -1.3952 5 1 1.5023 2.6212 0.7992 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0832 -1.2062 -0.1226 9 7 1.3336 -2.3834 0.1482 10 6 -0.0489 -2.7806 0.4541 11 6 0.5127 -4.0817 1.0437 12 6 1.6684 -3.8131 0.0659 13 1 1.5076 -4.2403 -0.9240 14 6 3.0460 -4.1504 0.6398 15 7 4.0854 -3.7053 -0.2916 16 6 5.3854 -3.8984 0.0070 17 8 5.6946 -4.4411 1.0466 18 6 6.4547 -3.4400 -0.9507 19 6 7.8323 -3.7774 -0.3768 20 6 8.9017 -3.3184 -1.3343 21 6 9.4859 -2.1068 -1.3392 22 6 10.4257 -2.1094 -2.3956 23 6 10.3535 -3.3197 -2.9784 24 8 9.4287 -4.0477 -2.3313 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5307 -2.1413 1.1939 27 1 -0.6628 -2.9345 -0.4333 28 1 0.7884 -4.0132 2.0961 29 1 -0.0754 -4.9691 0.8093 30 1 3.1746 -3.6446 1.5967 31 1 3.1253 -5.2278 0.7848 32 1 3.8381 -3.2708 -1.1229 33 1 6.3264 -3.9457 -1.9078 34 1 6.3751 -2.3626 -1.0957 35 1 7.9608 -3.2719 0.5803 36 1 7.9117 -4.8549 -0.2323 37 1 9.2788 -1.2897 -0.6640 38 1 11.0743 -1.2948 -2.6819 39 1 10.9394 -3.6497 -3.8233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483629497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:54 Heat of formation + Delta-G solvation = 5.374555 kcal Electronic energy + Delta-G solvation = -21025.655537 eV Core-core repulsion = 17742.844343 eV Total energy + Delta-G solvation = -3282.811194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.46799 -40.85038 -39.72337 -35.52835 -35.02962 -34.23616 -33.69277 -30.43472 -29.88368 -28.74334 -25.46135 -25.38330 -23.36726 -22.65023 -21.55701 -21.19830 -20.85367 -18.81627 -18.32607 -17.67956 -17.17213 -17.09972 -16.74736 -16.60666 -15.81630 -15.58192 -15.27816 -14.94149 -14.61197 -14.17729 -13.72855 -13.63677 -13.51183 -13.32011 -13.23727 -13.03752 -12.99600 -12.64657 -12.58310 -12.32359 -12.07387 -11.86711 -11.62455 -11.21601 -10.86394 -10.81929 -10.72899 -9.97156 -9.36790 -8.89021 -7.89333 -5.19169 0.79747 1.44511 1.46488 1.54468 1.66891 1.70866 2.05227 2.37355 2.49239 3.34765 3.44210 3.66022 3.90441 3.92202 4.04393 4.10804 4.16758 4.23780 4.34132 4.36827 4.56259 4.66835 4.72148 4.75849 4.90035 4.95507 4.98674 5.06242 5.08280 5.12904 5.25958 5.32198 5.50680 5.56778 5.62817 5.74304 5.95049 6.23181 6.59869 6.93722 7.26753 7.64504 8.65284 9.29985 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.004148 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.099207 B = 6748.255190 C = 8069.062335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.209 4.209 8 H 0.089 0.911 9 N -0.628 5.628 10 C 0.150 3.850 11 C -0.134 4.134 12 C 0.132 3.868 13 H 0.065 0.935 14 C 0.130 3.870 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.587 6.587 18 C -0.128 4.128 19 C -0.016 4.016 20 C -0.024 4.024 21 C -0.222 4.222 22 C -0.228 4.228 23 C -0.043 4.043 24 O -0.192 6.192 25 H 0.245 0.755 26 H 0.024 0.976 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.409 0.591 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.089 -8.724 -5.746 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.337 4.337 8 H 0.107 0.893 9 N -0.354 5.354 10 C 0.024 3.976 11 C -0.173 4.173 12 C 0.025 3.975 13 H 0.083 0.917 14 C 0.006 3.994 15 N -0.364 5.364 16 C 0.299 3.701 17 O -0.468 6.468 18 C -0.168 4.168 19 C -0.054 4.054 20 C -0.074 4.074 21 C -0.241 4.241 22 C -0.247 4.247 23 C -0.110 4.110 24 O -0.088 6.088 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 16.255 -9.052 -5.095 19.291 hybrid contribution -0.106 1.785 -0.403 1.833 sum 16.150 -7.267 -5.498 18.543 Atomic orbital electron populations 1.70025 1.06442 1.25322 1.58598 1.25562 0.96336 1.00667 1.03681 0.85223 0.77856 0.80005 0.77278 1.21274 1.22687 1.19469 1.19250 0.90987 0.82615 1.40877 0.89330 1.46130 1.07237 1.00138 1.81886 1.21918 0.87897 0.92038 0.95754 1.23524 0.96956 0.97892 0.98909 1.22590 0.92604 0.84834 0.97432 0.91726 1.21567 0.86519 0.99010 0.92353 1.46005 1.05616 1.60619 1.24125 1.21016 0.83960 0.78060 0.87108 1.90656 1.82836 1.45424 1.27877 1.21630 0.91516 1.04481 0.99168 1.19717 0.87868 1.03113 0.94712 1.22469 1.00371 0.91697 0.92847 1.21932 1.00939 0.98259 1.02940 1.22179 1.03608 0.99909 0.99014 1.24798 0.94231 0.91502 1.00436 1.84014 1.44826 1.42412 1.37593 0.94570 0.95775 0.96045 0.89955 0.88258 0.93852 0.90317 0.75597 0.86779 0.87486 0.88593 0.89806 0.82907 0.81581 0.74600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.09 11.87 21.65 0.26 -56.83 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 3 Si 0.97 45.06 29.56 68.60 2.03 47.09 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.21 -10.98 10.54 84.04 0.89 -10.10 16 8 H 0.09 4.38 7.62 -2.91 -0.02 4.36 16 9 N -0.63 -29.87 3.63 -713.48 -2.59 -32.46 16 10 C 0.15 6.78 7.19 83.17 0.60 7.38 16 11 C -0.13 -4.49 8.04 31.01 0.25 -4.24 16 12 C 0.13 4.71 4.11 41.87 0.17 4.88 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.13 4.38 5.53 86.38 0.48 4.86 16 15 N -0.71 -22.19 5.33 -463.08 -2.47 -24.66 16 16 C 0.51 15.54 7.83 87.65 0.69 16.23 16 17 O -0.59 -21.77 15.98 -3.02 -0.05 -21.82 16 18 C -0.13 -2.92 5.68 29.85 0.17 -2.75 16 19 C -0.02 -0.38 5.04 29.85 0.15 -0.22 16 20 C -0.02 -0.54 6.57 24.83 0.16 -0.38 16 21 C -0.22 -4.74 10.81 22.19 0.24 -4.50 16 22 C -0.23 -4.08 10.91 22.19 0.24 -3.84 16 23 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 24 O -0.19 -4.23 10.65 -2.49 -0.03 -4.25 16 25 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.02 1.23 7.65 -2.39 -0.02 1.22 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 2.74 8.13 -2.39 -0.02 2.72 16 29 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.41 12.04 8.47 -92.71 -0.79 11.25 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.10 2.27 8.10 -2.39 -0.02 2.25 16 36 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.24 1.74 8.06 -2.92 -0.02 1.72 16 Total: -1.00 -70.44 335.73 2.72 -67.72 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.26 Total: 21.19 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.31 Total: 4.02 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.80 Total: -113.95 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.44 2.72 -67.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.092 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds