Wall clock time and date at job start Tue Mar 31 2020 00:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00394 * 2 1 4 4 H 1.48499 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47147 * 300.00322 * 3 2 1 6 6 H 1.48497 * 109.46634 * 60.00103 * 3 2 1 7 7 C 1.38813 * 119.99342 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49054 * 0.02562 * 9 7 2 11 11 C 1.53952 * 86.11284 * 155.36107 * 10 9 7 12 12 C 1.47585 * 134.49103 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.86580 * 90.32782 * 12 9 7 14 14 C 1.52993 * 113.76997 * 318.94407 * 12 9 7 15 15 N 1.46496 * 109.47551 * 78.50711 * 14 12 9 16 16 C 1.34777 * 120.00258 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.46925 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47300 * 180.02562 * 19 18 16 21 21 C 1.34514 * 125.78979 * 89.99468 * 20 19 18 22 22 C 1.41379 * 106.84088 * 180.02562 * 21 20 19 23 23 C 1.34512 * 106.84274 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42041 * 359.73196 * 23 22 21 25 25 H 0.97005 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.77225 * 41.06204 * 10 9 7 27 27 H 1.09000 * 113.76620 * 269.65765 * 10 9 7 28 28 H 1.09002 * 113.74296 * 269.25848 * 11 10 9 29 29 H 1.09003 * 113.83713 * 137.96660 * 11 10 9 30 30 H 1.09000 * 109.47250 * 318.50489 * 14 12 9 31 31 H 1.09004 * 109.46862 * 198.50512 * 14 12 9 32 32 H 0.96999 * 119.99694 * 359.97438 * 15 14 12 33 33 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 34 34 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 35 35 H 1.09004 * 109.46930 * 299.99901 * 19 18 16 36 36 H 1.09004 * 109.47059 * 59.99503 * 19 18 16 37 37 H 1.08000 * 126.57971 * 0.04028 * 21 20 19 38 38 H 1.07999 * 126.58189 * 180.02562 * 22 21 20 39 39 H 1.08002 * 125.79365 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1035 -2.7573 -0.0005 11 6 0.3468 -4.0829 -0.6409 12 6 1.7199 -3.8102 -0.0015 13 1 1.8331 -4.2372 0.9950 14 6 2.9014 -4.1218 -0.9221 15 7 4.1492 -3.7190 -0.2688 16 6 5.3277 -3.8988 -0.8975 17 8 5.3553 -4.3945 -2.0040 18 6 6.6112 -3.4839 -0.2255 19 6 7.7928 -3.7956 -1.1462 20 6 9.0763 -3.3813 -0.4740 21 6 9.8326 -4.1568 0.3235 22 6 10.9350 -3.3717 0.7325 23 6 10.7861 -2.1631 0.1609 24 8 9.6615 -2.1765 -0.5732 25 1 -0.4850 0.8401 0.0004 26 1 -0.7171 -2.1390 -0.6558 27 1 -0.5273 -2.8730 0.9970 28 1 0.3588 -4.0621 -1.7306 29 1 -0.1587 -4.9607 -0.2382 30 1 2.7877 -3.5737 -1.8574 31 1 2.9286 -5.1917 -1.1290 32 1 4.1271 -3.3222 0.6161 33 1 6.5837 -2.4140 -0.0187 34 1 6.7253 -4.0319 0.7098 35 1 7.8201 -4.8655 -1.3526 36 1 7.6788 -3.2479 -2.0817 37 1 9.6357 -5.1825 0.5984 38 1 11.7418 -3.6825 1.3796 39 1 11.4590 -1.3255 0.2703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483629501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:57 Heat of formation + Delta-G solvation = 2.210907 kcal Electronic energy + Delta-G solvation = -21000.373564 eV Core-core repulsion = 17717.425183 eV Total energy + Delta-G solvation = -3282.948380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46785 -40.81527 -39.56992 -35.54410 -35.03322 -34.18982 -33.68547 -30.43849 -29.83246 -28.77383 -25.49168 -25.28355 -23.48687 -22.64136 -21.56707 -21.18384 -20.74001 -18.83209 -18.32636 -17.68089 -17.15339 -17.10299 -16.76823 -16.59957 -15.84894 -15.57712 -15.21886 -15.04838 -14.45552 -14.34085 -13.70186 -13.56343 -13.47872 -13.34577 -13.20919 -12.99728 -12.95986 -12.67250 -12.57038 -12.26959 -12.07590 -11.83764 -11.50603 -11.36565 -10.88246 -10.83452 -10.76639 -9.98485 -9.36348 -8.87185 -7.86193 -5.17497 0.80251 1.43553 1.45180 1.53396 1.66339 1.72700 2.06781 2.37203 2.49185 3.34100 3.40018 3.65387 3.91553 3.98727 4.04085 4.11366 4.18534 4.23029 4.33194 4.37815 4.56901 4.66336 4.73848 4.75784 4.90035 4.95990 4.98858 5.07322 5.09118 5.12877 5.26296 5.35470 5.49587 5.63006 5.65518 5.76896 5.99458 6.24913 6.59660 6.96730 7.26910 7.66732 8.61484 9.30986 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.004099 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.350098 B = 6829.501912 C = 8149.275982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.211 4.211 8 H 0.087 0.913 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.587 6.587 18 C -0.127 4.127 19 C -0.018 4.018 20 C -0.028 4.028 21 C -0.213 4.213 22 C -0.225 4.225 23 C -0.049 4.049 24 O -0.199 6.199 25 H 0.244 0.756 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.470 -10.094 3.363 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.340 4.340 8 H 0.104 0.896 9 N -0.357 5.357 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.167 4.167 19 C -0.055 4.055 20 C -0.078 4.078 21 C -0.232 4.232 22 C -0.244 4.244 23 C -0.116 4.116 24 O -0.096 6.096 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 17.407 -9.885 2.416 20.163 hybrid contribution 0.075 1.480 0.529 1.573 sum 17.482 -8.406 2.945 19.620 Atomic orbital electron populations 1.70008 1.06285 1.25035 1.59158 1.25498 0.96392 1.00463 1.04048 0.85197 0.78396 0.80516 0.76428 1.18963 1.22733 1.22102 1.19362 0.90755 0.83061 1.40784 0.89575 1.46436 1.03269 1.00047 1.85919 1.22172 0.87174 0.91852 0.96440 1.23560 0.95273 0.97775 1.00404 1.22667 0.93288 0.84481 0.96859 0.90977 1.21524 0.82778 0.99378 0.95654 1.45981 1.05887 1.62874 1.21587 1.21042 0.86074 0.77521 0.85538 1.90660 1.88101 1.46581 1.21491 1.21632 0.89849 1.04488 1.00739 1.19738 0.85733 1.03024 0.97042 1.22543 0.98063 0.83892 1.03305 1.21932 0.96647 1.02263 1.02352 1.22196 1.01891 0.94305 1.05997 1.24788 0.88853 1.01662 0.96289 1.84035 1.33715 1.34277 1.57582 0.94656 0.94438 0.95975 0.90506 0.88741 0.94244 0.90088 0.75544 0.88324 0.85825 0.87524 0.91007 0.81897 0.81263 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.40 11.38 21.65 0.25 -57.15 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 45.74 29.55 68.60 2.03 47.77 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.21 -11.20 10.51 84.03 0.88 -10.32 16 8 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 9 N -0.63 -30.09 3.58 -694.24 -2.48 -32.57 16 10 C 0.15 6.79 7.52 86.48 0.65 7.44 16 11 C -0.13 -4.47 7.86 31.24 0.25 -4.22 16 12 C 0.13 4.73 4.33 45.08 0.20 4.92 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.13 4.44 5.53 86.38 0.48 4.92 16 15 N -0.71 -21.84 5.53 -463.07 -2.56 -24.40 16 16 C 0.51 15.43 7.83 87.66 0.69 16.12 16 17 O -0.59 -21.86 15.98 -3.03 -0.05 -21.91 16 18 C -0.13 -2.85 5.68 29.85 0.17 -2.68 16 19 C -0.02 -0.40 5.04 29.85 0.15 -0.25 16 20 C -0.03 -0.64 6.57 24.83 0.16 -0.47 16 21 C -0.21 -4.07 10.81 22.19 0.24 -3.83 16 22 C -0.23 -3.78 10.91 22.19 0.24 -3.54 16 23 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 24 O -0.20 -4.75 10.65 -2.53 -0.03 -4.77 16 25 H 0.24 14.41 8.31 -92.70 -0.77 13.64 16 26 H 0.04 1.96 7.15 -2.39 -0.02 1.95 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.41 11.56 8.47 -92.71 -0.79 10.77 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.11 2.25 8.10 -2.38 -0.02 2.23 16 36 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.23 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.62 335.38 2.80 -68.83 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.26 Total: 19.72 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.38 Total: 4.49 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.80 Total: -114.13 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.08 Total: -26.69 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -71.62 2.80 -68.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483629501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.037 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds