Wall clock time and date at job start Tue Mar 31 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47381 * 300.00204 * 3 2 1 6 6 H 1.48502 * 109.47141 * 60.00113 * 3 2 1 7 7 C 1.38807 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46984 * 183.48091 * 10 9 7 12 12 H 1.08998 * 109.70041 * 53.12226 * 11 10 9 13 13 C 1.53628 * 109.66422 * 173.71182 * 11 10 9 14 14 C 1.53040 * 109.24316 * 174.54709 * 13 11 10 15 15 C 1.53039 * 109.53924 * 298.51141 * 14 13 11 16 16 C 1.53204 * 109.31137 * 61.36420 * 15 14 13 17 17 N 1.46922 * 108.77511 * 305.36372 * 16 15 14 18 18 C 1.34776 * 120.63222 * 233.58804 * 17 16 15 19 19 O 1.21698 * 120.00010 * 172.99807 * 18 17 16 20 20 C 1.46656 * 119.99938 * 353.26906 * 18 17 16 21 21 C 1.36535 * 125.98910 * 172.95924 * 20 18 17 22 22 C 1.40364 * 106.71052 * 179.85443 * 21 20 18 23 23 C 1.35135 * 107.11195 * 0.40214 * 22 21 20 24 24 O 1.33925 * 108.76832 * 359.75360 * 23 22 21 25 25 H 0.96997 * 120.00274 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99611 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47259 * 63.48398 * 10 9 7 28 28 H 1.08997 * 109.47144 * 303.47741 * 10 9 7 29 29 H 1.09010 * 109.63248 * 54.55616 * 13 11 10 30 30 H 1.08995 * 109.45569 * 294.43699 * 13 11 10 31 31 H 1.08999 * 109.46053 * 178.49133 * 14 13 11 32 32 H 1.09003 * 109.44644 * 58.52467 * 14 13 11 33 33 H 1.09001 * 109.49968 * 301.41406 * 15 14 13 34 34 H 1.08997 * 109.49822 * 181.31375 * 15 14 13 35 35 H 1.08994 * 109.58635 * 185.57745 * 16 15 14 36 36 H 1.08996 * 109.58430 * 65.15282 * 16 15 14 37 37 H 1.08000 * 126.64740 * 359.97438 * 21 20 18 38 38 H 1.08003 * 126.44996 * 180.13451 * 22 21 20 39 39 H 1.07999 * 125.61441 * 179.71082 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0662 -4.8184 -0.0881 12 1 0.4034 -4.6721 -0.9410 13 6 1.8316 -6.1409 -0.2468 14 6 0.8408 -7.3062 -0.1967 15 6 0.1340 -7.3191 1.1606 16 6 -0.6466 -6.0128 1.3377 17 7 0.2730 -4.8829 1.1470 18 6 0.3826 -3.9209 2.0845 19 8 1.2363 -3.0604 1.9764 20 6 -0.5230 -3.9146 3.2381 21 6 -0.4372 -3.0874 4.3209 22 6 -1.5011 -3.4249 5.1720 23 6 -2.1758 -4.4368 4.5829 24 8 -1.5834 -4.7291 3.4179 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 0.0002 27 1 2.6372 -3.7420 0.9190 28 1 2.7308 -3.6880 -0.8577 29 1 2.5559 -6.2442 0.5614 30 1 2.3520 -6.1466 -1.2045 31 1 1.3770 -8.2450 -0.3358 32 1 0.1022 -7.1889 -0.9897 33 1 0.8741 -7.4112 1.9555 34 1 -0.5545 -8.1630 1.2043 35 1 -1.0704 -5.9735 2.3411 36 1 -1.4462 -5.9619 0.5988 37 1 0.3044 -2.3204 4.4891 38 1 -1.7340 -2.9656 6.1213 39 1 -3.0486 -4.9292 4.9856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484613464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:27 Heat of formation + Delta-G solvation = 18.903646 kcal Electronic energy + Delta-G solvation = -22868.591169 eV Core-core repulsion = 19586.366640 eV Total energy + Delta-G solvation = -3282.224529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.61505 -41.25306 -38.24540 -36.36758 -34.26635 -33.78378 -33.56781 -31.54544 -30.57180 -27.72345 -26.00957 -24.36722 -24.32175 -22.85296 -22.28680 -21.47754 -20.63040 -19.23584 -18.25676 -17.43793 -17.20327 -16.89388 -16.67385 -15.80687 -15.50144 -15.41506 -15.13232 -14.95222 -14.66735 -14.28399 -14.01902 -13.85218 -13.70851 -13.48839 -13.45624 -13.12118 -12.83979 -12.66044 -12.13714 -12.05383 -11.87722 -11.73096 -11.42389 -11.36040 -10.97877 -10.90045 -10.23522 -9.71954 -9.39401 -8.63785 -7.86368 -5.05748 0.22280 1.41992 1.44594 1.52419 1.54168 1.71097 2.24385 2.39357 2.59789 3.47079 3.61361 3.80292 3.92832 3.97023 4.05794 4.12915 4.18335 4.32553 4.39173 4.46363 4.59096 4.65124 4.82571 4.86879 4.93170 4.96789 5.02878 5.07898 5.14042 5.18183 5.25356 5.30979 5.47653 5.49732 5.52342 5.81512 5.97777 6.34336 6.53874 7.34349 7.40966 8.17777 8.40908 9.38435 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.007314 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.528913 B = 3827.130105 C = 5347.062422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.086 4.086 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.299 1.299 7 C -0.210 4.210 8 H 0.064 0.936 9 N -0.704 5.704 10 C 0.159 3.841 11 C 0.146 3.854 12 H 0.066 0.934 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.549 3.451 19 O -0.483 6.483 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.232 4.232 23 C -0.006 4.006 24 O -0.160 6.160 25 H 0.245 0.755 26 H 0.366 0.634 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.179 0.821 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -19.619 6.887 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.277 4.277 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.227 1.227 7 C -0.343 4.343 8 H 0.082 0.918 9 N -0.344 5.344 10 C 0.033 3.967 11 C 0.043 3.957 12 H 0.084 0.916 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.163 4.163 16 C -0.028 4.028 17 N -0.342 5.342 18 C 0.335 3.665 19 O -0.356 6.356 20 C -0.138 4.138 21 C -0.174 4.174 22 C -0.250 4.250 23 C -0.074 4.074 24 O -0.056 6.056 25 H 0.053 0.947 26 H 0.197 0.803 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.196 0.804 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.398 -19.284 6.586 20.847 hybrid contribution 0.123 1.781 0.270 1.806 sum -4.275 -17.503 6.856 19.278 Atomic orbital electron populations 1.69839 1.06441 1.25135 1.61251 1.25416 0.96379 1.00609 1.05265 0.85106 0.78070 0.80382 0.76516 1.19454 1.21812 1.22665 1.19526 0.90888 0.85658 1.38252 0.91777 1.42396 1.04747 1.00861 1.86418 1.20980 0.93948 0.84702 0.97080 1.21566 0.92485 0.96135 0.85526 0.91575 1.21949 0.98238 0.92577 1.02983 1.21516 0.98206 0.97908 0.97412 1.21896 1.00005 0.96477 0.97908 1.22311 0.91672 0.85074 1.03792 1.47848 1.43655 1.24226 1.18458 1.17264 0.84679 0.82308 0.82216 1.91258 1.34082 1.37452 1.72853 1.22249 0.93297 0.98563 0.99649 1.22072 1.01124 0.99869 0.94285 1.22097 0.97310 1.01998 1.03627 1.25431 0.99631 0.98353 0.84034 1.84197 1.35063 1.49249 1.37114 0.94658 0.80273 0.95896 0.96065 0.92068 0.89452 0.89330 0.91127 0.92269 0.87893 0.87785 0.91156 0.84887 0.80390 0.72453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.83 13.06 21.65 0.28 -64.54 16 2 C -0.09 -5.43 5.50 84.86 0.47 -4.96 16 3 Si 0.97 50.76 29.55 68.60 2.03 52.79 16 4 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 6 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 7 C -0.21 -13.09 9.59 84.03 0.81 -12.29 16 8 H 0.06 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.70 -40.00 3.18 -343.45 -1.09 -41.10 16 10 C 0.16 7.27 4.87 86.38 0.42 7.69 16 11 C 0.15 5.11 2.96 45.12 0.13 5.25 16 12 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.12 -2.96 5.40 30.82 0.17 -2.79 16 14 C -0.11 -2.04 5.88 30.62 0.18 -1.86 16 15 C -0.12 -2.27 6.08 30.68 0.19 -2.09 16 16 C 0.09 2.31 6.12 86.37 0.53 2.84 16 17 N -0.61 -21.20 2.97 -798.89 -2.37 -23.57 16 18 C 0.55 23.65 6.94 86.44 0.60 24.25 16 19 O -0.48 -25.68 10.55 -4.34 -0.05 -25.73 16 20 C -0.09 -3.20 6.78 24.07 0.16 -3.03 16 21 C -0.15 -5.48 10.63 22.39 0.24 -5.25 16 22 C -0.23 -5.82 10.88 22.07 0.24 -5.58 16 23 C -0.01 -0.13 12.08 67.10 0.81 0.68 16 24 O -0.16 -4.46 7.22 -5.05 -0.04 -4.50 16 25 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 26 H 0.37 22.36 6.96 -92.71 -0.65 21.71 16 27 H 0.02 1.16 6.43 -2.39 -0.02 1.14 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 2.55 4.18 -25.04 -0.10 2.44 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 38 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.26 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -81.73 312.73 4.02 -77.70 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.32 Total: 26.07 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 4.94 Total: 2.88 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -3.18 Total: -129.21 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.08 Total: -30.23 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.03 Total: 52.79 kcal Total: -81.73 4.02 -77.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484613464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.608 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds