Wall clock time and date at job start Tue Mar 31 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00264 * 3 2 1 5 5 H 1.48502 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47188 * 119.99972 * 3 2 1 7 7 C 1.38817 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64962 * 0.02770 * 9 7 2 11 11 C 1.54916 * 104.83371 * 155.82810 * 10 9 7 12 12 C 1.55154 * 101.57982 * 37.00410 * 11 10 9 13 13 H 1.09006 * 110.71424 * 83.04551 * 12 11 10 14 14 C 1.52992 * 110.71826 * 206.13457 * 12 11 10 15 15 N 1.46506 * 109.47161 * 185.00128 * 14 12 11 16 16 C 1.34773 * 119.99968 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 15 14 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.47259 * 179.72770 * 18 16 15 20 20 C 1.34513 * 125.78994 * 90.00290 * 19 18 16 21 21 C 1.41389 * 106.83987 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.84086 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.41910 * 359.73745 * 22 21 20 24 24 C 1.47021 * 125.64786 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00192 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.37212 * 36.98133 * 10 9 7 27 27 H 1.09008 * 110.45876 * 274.70643 * 10 9 7 28 28 H 1.09000 * 110.99826 * 278.93510 * 11 10 9 29 29 H 1.09001 * 111.03629 * 155.09804 * 11 10 9 30 30 H 1.09004 * 109.47116 * 65.00763 * 14 12 11 31 31 H 1.08998 * 109.47794 * 305.00675 * 14 12 11 32 32 H 0.96998 * 119.99507 * 0.02562 * 15 14 12 33 33 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 34 34 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 35 35 H 1.07998 * 126.57886 * 0.03052 * 20 19 18 36 36 H 1.08003 * 126.57757 * 179.97438 * 21 20 19 37 37 H 1.07997 * 125.78868 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.88341 * 61.68627 * 24 9 7 39 39 H 1.08995 * 109.88027 * 300.52091 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 -0.0006 11 6 -0.4019 -3.9318 -0.6138 12 6 0.7782 -4.7524 -0.0296 13 1 0.5445 -5.1016 0.9762 14 6 1.1228 -5.9304 -0.9430 15 7 2.1566 -6.7532 -0.3099 16 6 2.6193 -7.8533 -0.9359 17 8 2.1765 -8.1650 -2.0212 18 6 3.6823 -8.7000 -0.2845 19 6 4.0165 -9.8643 -1.1809 20 6 4.9643 -9.8756 -2.1353 21 6 4.9351 -11.1596 -2.7265 22 6 3.9715 -11.8563 -2.0977 23 8 3.4227 -11.0688 -1.1584 24 6 1.9316 -3.7275 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5995 -1.7582 -0.6153 27 1 -0.5291 -2.4872 1.0173 28 1 -0.3523 -3.8965 -1.7021 29 1 -1.3592 -4.3329 -0.2811 30 1 1.4917 -5.5544 -1.8974 31 1 0.2305 -6.5335 -1.1106 32 1 2.5073 -6.5064 0.5601 33 1 4.5765 -8.0985 -0.1214 34 1 3.3151 -9.0716 0.6722 35 1 5.6216 -9.0603 -2.3992 36 1 5.5655 -11.5131 -3.5291 37 1 3.6904 -12.8774 -2.3089 38 1 2.5281 -3.8652 0.9002 39 1 2.5580 -3.8502 -0.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493244475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:19 Heat of formation + Delta-G solvation = 1.264142 kcal Electronic energy + Delta-G solvation = -20882.523821 eV Core-core repulsion = 17599.534386 eV Total energy + Delta-G solvation = -3282.989435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.68524 -39.66249 -37.66452 -34.68177 -33.31692 -32.66214 -32.13082 -29.84833 -28.44927 -27.15734 -25.38679 -23.49380 -21.89038 -21.23164 -20.48161 -19.96973 -19.59150 -17.61923 -17.29367 -16.78021 -16.04338 -15.81182 -15.62065 -14.88042 -14.60736 -14.44588 -13.75837 -13.46501 -13.34452 -12.95515 -12.83562 -12.62311 -12.52165 -11.99432 -11.77840 -11.68337 -11.50977 -10.97391 -10.80161 -10.44598 -10.17798 -10.06356 -10.03450 -9.96144 -9.77807 -9.52851 -9.00041 -8.66287 -8.59492 -6.85243 -5.66807 -3.08713 1.56460 2.47223 2.58140 2.79464 3.32721 3.39433 3.43585 3.44997 4.37452 4.47320 4.76335 4.80008 4.88889 5.04194 5.11225 5.14189 5.24184 5.38509 5.51236 5.65979 5.69224 5.78254 5.87051 5.93939 6.05906 6.09764 6.33141 6.36402 6.40815 6.53440 6.57329 6.70257 6.88988 6.99184 7.48590 7.49818 7.60693 7.84308 8.19241 8.35150 9.20599 9.81623 10.46382 11.37097 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.002908 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.729252 B = 9626.157599 C =10092.278805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.724 5.724 16 C 0.511 3.489 17 O -0.534 6.534 18 C -0.063 4.063 19 C 0.008 3.992 20 C -0.197 4.197 21 C -0.213 4.213 22 C -0.041 4.041 23 O -0.173 6.173 24 C 0.142 3.858 25 H 0.253 0.747 26 H 0.107 0.893 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.018 0.982 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -20.253 0.046 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.375 5.375 16 C 0.296 3.704 17 O -0.410 6.410 18 C -0.103 4.103 19 C -0.043 4.043 20 C -0.217 4.217 21 C -0.232 4.232 22 C -0.109 4.109 23 O -0.069 6.069 24 C 0.016 3.984 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.036 0.964 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.040 -20.298 -0.547 21.184 hybrid contribution 0.837 0.925 0.295 1.282 sum 6.876 -19.373 -0.252 20.559 Atomic orbital electron populations 1.69781 1.04907 1.24928 1.57508 1.24794 0.95735 0.97751 1.02391 0.86145 0.78406 0.83011 0.77890 1.21138 1.21546 1.21224 1.19030 0.90463 0.82508 1.43255 0.90581 1.44498 1.01990 0.99732 1.86861 1.21932 0.84668 0.92529 0.98187 1.23012 0.95531 0.98597 1.00347 1.22449 0.98333 0.93994 0.98606 0.90531 1.21480 0.90068 0.90991 0.96544 1.46046 1.41874 1.26468 1.23150 1.20340 0.83052 0.81199 0.85845 1.90745 1.58832 1.70591 1.20832 1.20116 1.00392 0.91597 0.98160 1.21494 0.96018 0.85629 1.01139 1.21548 1.02479 0.98885 0.98745 1.21805 1.02461 0.94878 1.04097 1.23974 0.97438 0.97253 0.92196 1.83979 1.52966 1.21439 1.48542 1.21332 0.93445 0.85966 0.97695 0.93646 0.87539 0.97005 0.91838 0.92114 0.91181 0.91631 0.76337 0.85752 0.87025 0.83532 0.83508 0.78183 0.96392 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.30 3.39 -170.07 -0.58 -15.88 16 10 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 11 C -0.14 -2.49 6.53 -24.58 -0.16 -2.65 16 12 C -0.11 -1.85 2.96 -88.79 -0.26 -2.12 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.13 1.92 5.02 -4.04 -0.02 1.90 16 15 N -0.72 -8.69 5.47 -60.29 -0.33 -9.02 16 16 C 0.51 6.65 7.82 -10.98 -0.09 6.56 16 17 O -0.53 -9.41 16.03 5.56 0.09 -9.32 16 18 C -0.06 -0.58 6.23 -29.03 -0.18 -0.76 16 19 C 0.01 0.09 5.81 -35.63 -0.21 -0.12 16 20 C -0.20 -2.24 10.81 -39.70 -0.43 -2.67 16 21 C -0.21 -2.17 10.91 -39.70 -0.43 -2.61 16 22 C -0.04 -0.40 12.09 29.42 0.36 -0.04 16 23 O -0.17 -2.12 10.65 5.71 0.06 -2.06 16 24 C 0.14 2.82 6.75 -3.07 -0.02 2.79 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 27 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.40 3.79 8.47 -40.82 -0.35 3.44 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.48 7.68 -51.93 -0.40 0.09 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -34.40 328.41 -7.64 -42.03 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.65 Total: 1.49 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.71 Total: -2.88 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.35 Total: -51.14 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.15 Total: -11.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.40 -7.64 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493244475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.298 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds