Wall clock time and date at job start Tue Mar 31 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00264 * 3 2 1 5 5 H 1.48502 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47188 * 119.99972 * 3 2 1 7 7 C 1.38817 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64962 * 0.02770 * 9 7 2 11 11 C 1.54916 * 104.83371 * 155.82810 * 10 9 7 12 12 C 1.55154 * 101.57982 * 37.00410 * 11 10 9 13 13 H 1.09006 * 110.71424 * 83.04551 * 12 11 10 14 14 C 1.52992 * 110.71826 * 206.13457 * 12 11 10 15 15 N 1.46506 * 109.47161 * 185.00128 * 14 12 11 16 16 C 1.34773 * 119.99968 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 15 14 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.47259 * 179.72770 * 18 16 15 20 20 C 1.34513 * 125.78994 * 90.00290 * 19 18 16 21 21 C 1.41389 * 106.83987 * 180.02562 * 20 19 18 22 22 C 1.34512 * 106.84086 * 359.97438 * 21 20 19 23 23 O 1.34303 * 108.41910 * 359.73745 * 22 21 20 24 24 C 1.47021 * 125.64786 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00192 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.37212 * 36.98133 * 10 9 7 27 27 H 1.09008 * 110.45876 * 274.70643 * 10 9 7 28 28 H 1.09000 * 110.99826 * 278.93510 * 11 10 9 29 29 H 1.09001 * 111.03629 * 155.09804 * 11 10 9 30 30 H 1.09004 * 109.47116 * 65.00763 * 14 12 11 31 31 H 1.08998 * 109.47794 * 305.00675 * 14 12 11 32 32 H 0.96998 * 119.99507 * 0.02562 * 15 14 12 33 33 H 1.09001 * 109.46564 * 299.73030 * 18 16 15 34 34 H 1.08998 * 109.47012 * 59.72084 * 18 16 15 35 35 H 1.07998 * 126.57886 * 0.03052 * 20 19 18 36 36 H 1.08003 * 126.57757 * 179.97438 * 21 20 19 37 37 H 1.07997 * 125.78868 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.88341 * 61.68627 * 24 9 7 39 39 H 1.08995 * 109.88027 * 300.52091 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 -0.0006 11 6 -0.4019 -3.9318 -0.6138 12 6 0.7782 -4.7524 -0.0296 13 1 0.5445 -5.1016 0.9762 14 6 1.1228 -5.9304 -0.9430 15 7 2.1566 -6.7532 -0.3099 16 6 2.6193 -7.8533 -0.9359 17 8 2.1765 -8.1650 -2.0212 18 6 3.6823 -8.7000 -0.2845 19 6 4.0165 -9.8643 -1.1809 20 6 4.9643 -9.8756 -2.1353 21 6 4.9351 -11.1596 -2.7265 22 6 3.9715 -11.8563 -2.0977 23 8 3.4227 -11.0688 -1.1584 24 6 1.9316 -3.7275 -0.0016 25 1 -0.4850 0.8400 0.0004 26 1 -0.5995 -1.7582 -0.6153 27 1 -0.5291 -2.4872 1.0173 28 1 -0.3523 -3.8965 -1.7021 29 1 -1.3592 -4.3329 -0.2811 30 1 1.4917 -5.5544 -1.8974 31 1 0.2305 -6.5335 -1.1106 32 1 2.5073 -6.5064 0.5601 33 1 4.5765 -8.0985 -0.1214 34 1 3.3151 -9.0716 0.6722 35 1 5.6216 -9.0603 -2.3992 36 1 5.5655 -11.5131 -3.5291 37 1 3.6904 -12.8774 -2.3089 38 1 2.5281 -3.8652 0.9002 39 1 2.5580 -3.8502 -0.8851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493244475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:18 Heat of formation + Delta-G solvation = -22.146490 kcal Electronic energy + Delta-G solvation = -20883.538982 eV Core-core repulsion = 17599.534386 eV Total energy + Delta-G solvation = -3284.004596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.45979 -40.75611 -39.23581 -36.05707 -34.36456 -34.07192 -33.07049 -31.57180 -29.95266 -28.18572 -27.05966 -25.04513 -22.67026 -22.38363 -21.79832 -21.35147 -20.83344 -18.92566 -18.42208 -18.08124 -17.28111 -16.78018 -16.64964 -16.55908 -16.07657 -15.53853 -15.26580 -14.57521 -14.52487 -14.25781 -13.73204 -13.67882 -13.54976 -13.51904 -13.37836 -13.13544 -12.84007 -12.66275 -12.60699 -12.05193 -11.87658 -11.81555 -11.57775 -11.37828 -11.01006 -10.80476 -10.72474 -10.09664 -9.37033 -8.87028 -7.76747 -5.20848 0.77665 1.46909 1.49940 1.56305 1.61095 1.69208 2.05357 2.39917 2.50437 3.32832 3.62360 3.66107 3.79232 3.97084 4.00563 4.10406 4.16194 4.19121 4.40137 4.46883 4.51219 4.66018 4.71394 4.82800 4.93055 4.94827 5.03243 5.07149 5.13887 5.23918 5.35765 5.44642 5.49745 5.63140 5.66890 5.83865 6.21907 6.32874 6.55344 7.11988 7.23851 7.80384 8.43692 9.25044 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.002908 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.729252 B = 9626.157599 C =10092.278805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.100 0.900 14 C 0.144 3.856 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.585 6.585 18 C -0.055 4.055 19 C -0.015 4.015 20 C -0.216 4.216 21 C -0.231 4.231 22 C -0.044 4.044 23 O -0.192 6.192 24 C 0.138 3.862 25 H 0.247 0.753 26 H 0.069 0.931 27 H -0.009 1.009 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.418 0.582 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.236 0.764 38 H 0.033 0.967 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 -21.808 0.785 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.027 3.973 11 C -0.163 4.163 12 C -0.112 4.112 13 H 0.118 0.882 14 C 0.020 3.980 15 N -0.365 5.365 16 C 0.298 3.702 17 O -0.465 6.465 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.235 4.235 21 C -0.249 4.249 22 C -0.111 4.111 23 O -0.089 6.089 24 C 0.013 3.987 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.009 0.991 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.222 -21.874 0.227 23.037 hybrid contribution 0.509 1.362 0.038 1.454 sum 7.731 -20.513 0.264 21.923 Atomic orbital electron populations 1.70048 1.06222 1.25073 1.58637 1.25641 0.96640 1.01032 1.02817 0.85131 0.77120 0.78770 0.78191 1.20434 1.22030 1.20261 1.19429 0.91033 0.83895 1.42516 0.90141 1.44828 1.02809 1.01084 1.86839 1.21721 0.84143 0.94832 0.96634 1.22854 0.97933 0.95620 0.99915 1.22284 0.95616 0.93257 1.00026 0.88208 1.21170 0.90960 0.90583 0.95299 1.45895 1.41128 1.25887 1.23612 1.20983 0.83044 0.81063 0.85129 1.90726 1.60704 1.71863 1.23209 1.20226 1.00283 0.90559 0.98306 1.21959 0.96350 0.86200 1.02037 1.21892 1.02868 0.99755 0.98985 1.22171 1.03193 0.94715 1.04869 1.24746 0.96784 0.98394 0.91135 1.83970 1.53564 1.21972 1.49381 1.21521 0.94728 0.84523 0.97958 0.94360 0.91285 0.99075 0.92169 0.89299 0.93166 0.91071 0.74485 0.82711 0.84148 0.82782 0.81616 0.74775 0.94926 0.96168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.37 10.27 84.03 0.86 -12.51 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -31.94 3.39 -691.99 -2.35 -34.28 16 10 C 0.15 7.37 5.89 86.86 0.51 7.88 16 11 C -0.12 -4.41 6.53 31.99 0.21 -4.20 16 12 C -0.09 -2.79 2.96 -9.61 -0.03 -2.82 16 13 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 14 C 0.14 3.88 5.02 86.38 0.43 4.31 16 15 N -0.71 -15.22 5.47 -463.05 -2.53 -17.76 16 16 C 0.51 12.28 7.82 87.66 0.69 12.97 16 17 O -0.59 -20.21 16.03 -3.04 -0.05 -20.25 16 18 C -0.05 -0.86 6.23 29.10 0.18 -0.68 16 19 C -0.02 -0.34 5.81 24.83 0.14 -0.19 16 20 C -0.22 -4.67 10.81 22.19 0.24 -4.43 16 21 C -0.23 -4.39 10.91 22.19 0.24 -4.15 16 22 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 23 O -0.19 -4.44 10.65 -2.50 -0.03 -4.46 16 24 C 0.14 5.27 6.75 86.73 0.59 5.86 16 25 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.07 3.88 5.87 -2.39 -0.01 3.87 16 27 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 28 H 0.06 2.18 8.05 -2.39 -0.02 2.16 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.05 1.58 7.93 -2.39 -0.02 1.56 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.42 6.37 8.47 -92.71 -0.79 5.58 16 33 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.02 0.80 7.68 -2.39 -0.02 0.78 16 Total: -1.00 -76.87 328.41 2.90 -73.97 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.27 Total: 13.12 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.34 Total: -1.39 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.66 Total: -108.53 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.08 Total: -24.72 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.87 2.90 -73.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493244475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.828 kcal (2) G-P(sol) polarization free energy of solvation -76.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds