Wall clock time and date at job start Tue Mar 31 2020 00:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48498 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46971 * 300.00190 * 3 2 1 6 6 H 1.48506 * 109.46731 * 59.99680 * 3 2 1 7 7 C 1.38819 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99690 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64676 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27128 * 178.97349 * 10 9 7 12 12 C 1.55153 * 102.94091 * 337.80656 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.39176 * 12 11 10 14 14 C 1.52997 * 111.00740 * 153.57364 * 12 11 10 15 15 C 1.53002 * 109.47535 * 178.17610 * 14 12 11 16 16 N 1.46494 * 109.47001 * 180.02562 * 15 14 12 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99835 * 0.02562 * 17 16 15 19 19 C 1.47382 * 119.99879 * 179.97438 * 17 16 15 20 20 C 1.47016 * 127.19106 * 179.70432 * 19 17 16 21 21 C 1.34178 * 105.95478 * 179.89360 * 20 19 17 22 22 O 1.34224 * 109.12226 * 0.38140 * 21 20 19 23 23 C 1.33652 * 110.90757 * 359.74547 * 22 21 20 24 24 C 1.47463 * 125.62740 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.88402 * 59.55554 * 10 9 7 27 27 H 1.09004 * 110.01104 * 298.46079 * 10 9 7 28 28 H 1.09000 * 110.71810 * 219.44152 * 11 10 9 29 29 H 1.09002 * 110.86890 * 96.23919 * 11 10 9 30 30 H 1.09005 * 109.46889 * 58.17935 * 14 12 11 31 31 H 1.08996 * 109.47223 * 298.18714 * 14 12 11 32 32 H 1.09005 * 109.46767 * 60.00250 * 15 14 12 33 33 H 1.09002 * 109.47113 * 300.00590 * 15 14 12 34 34 H 0.96995 * 120.00292 * 0.27801 * 16 15 14 35 35 H 1.08000 * 127.02487 * 0.02562 * 20 19 17 36 36 H 1.07996 * 125.44017 * 180.12223 * 21 20 19 37 37 H 1.07998 * 125.79849 * 180.02562 * 23 22 21 38 38 H 1.09005 * 110.34772 * 85.25327 * 24 9 7 39 39 H 1.09001 * 110.40822 * 322.91910 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0259 12 6 0.8517 -4.6563 -0.6103 13 1 0.8565 -4.5974 -1.6988 14 6 1.0368 -6.1009 -0.1415 15 6 2.3025 -6.6840 -0.7732 16 7 2.4792 -8.0674 -0.3247 17 6 3.5352 -8.7857 -0.7555 18 8 4.3414 -8.2852 -1.5161 19 6 3.7134 -10.1772 -0.3039 20 6 4.7954 -11.1006 -0.6757 21 6 4.5435 -12.2457 -0.0233 22 8 3.4177 -12.1047 0.6938 23 6 2.9056 -10.8796 0.5417 24 6 1.9340 -3.7314 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5576 -2.0524 -0.8832 27 1 -0.5568 -2.0837 0.9010 28 1 -1.2986 -4.2516 -0.6759 29 1 -0.6335 -4.4202 0.9804 30 1 0.1736 -6.6942 -0.4433 31 1 1.1300 -6.1214 0.9443 32 1 3.1657 -6.0907 -0.4714 33 1 2.2092 -6.6635 -1.8590 34 1 1.8344 -8.4675 0.2793 35 1 5.6248 -10.8978 -1.3371 36 1 5.1476 -13.1396 -0.0711 37 1 2.0054 -10.5086 1.0092 38 1 2.1674 -4.0417 1.0191 39 1 2.8332 -3.7413 -0.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493994717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:48 Heat of formation + Delta-G solvation = -4.009227 kcal Electronic energy + Delta-G solvation = -20683.213408 eV Core-core repulsion = 17399.995302 eV Total energy + Delta-G solvation = -3283.218106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.85510 -39.52466 -37.77338 -35.23962 -33.33952 -32.86350 -31.05026 -29.99722 -28.90730 -26.66373 -24.89195 -23.62960 -22.19684 -21.73924 -20.44403 -19.97912 -19.47583 -18.59885 -16.85137 -16.49041 -16.39636 -15.76779 -15.59077 -15.04636 -14.83237 -14.51788 -13.74873 -13.69074 -13.48054 -13.23509 -12.74828 -12.45858 -12.25085 -11.93854 -11.82289 -11.53462 -11.10121 -10.84468 -10.76155 -10.24325 -10.13389 -10.10104 -9.94335 -9.83373 -9.74561 -9.59337 -9.24240 -9.06898 -8.56476 -6.78173 -5.67376 -3.00278 1.04022 1.76870 2.56717 3.02921 3.21262 3.42543 3.48214 3.50709 4.24332 4.36547 4.53723 4.73842 4.91590 5.09922 5.17570 5.29335 5.34153 5.51151 5.54330 5.63247 5.66837 5.77850 5.89111 5.94705 6.02982 6.12146 6.21651 6.36275 6.41151 6.57451 6.59006 6.62046 6.76169 6.99949 7.36502 7.61154 7.67065 7.87065 8.10051 8.30643 9.26930 9.87355 10.53702 11.44600 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.002766 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.229747 B =10119.543289 C =10602.134323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.118 3.882 16 N -0.725 5.725 17 C 0.582 3.418 18 O -0.534 6.534 19 C -0.232 4.232 20 C -0.165 4.165 21 C -0.042 4.042 22 O -0.175 6.175 23 C 0.018 3.982 24 C 0.139 3.861 25 H 0.251 0.749 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.396 0.604 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.211 0.789 38 H 0.017 0.983 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -24.681 1.531 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.369 3.631 18 O -0.412 6.412 19 C -0.236 4.236 20 C -0.185 4.185 21 C -0.108 4.108 22 O -0.070 6.070 23 C -0.052 4.052 24 C 0.013 3.987 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.035 0.965 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.052 -24.277 1.147 24.495 hybrid contribution 0.178 0.888 0.184 0.924 sum 3.230 -23.389 1.331 23.648 Atomic orbital electron populations 1.69979 1.04877 1.24809 1.57474 1.24806 0.95734 0.97671 1.02467 0.86046 0.78760 0.83808 0.77197 1.20492 1.21779 1.21808 1.19132 0.90489 0.82493 1.43265 0.90422 1.44508 1.01750 0.99983 1.87112 1.21126 0.84360 0.88359 1.00946 1.22899 0.95915 0.99497 0.99337 1.22274 0.97676 0.91898 1.00225 0.90553 1.21748 0.96068 0.96785 1.00820 1.21531 0.99188 0.80094 0.99642 1.45924 1.26818 1.14793 1.50120 1.17287 0.81235 0.84071 0.80511 1.90810 1.43394 1.71525 1.35445 1.21624 0.99929 0.96338 1.05758 1.22824 1.00371 0.92086 1.03216 1.23964 0.88866 1.00978 0.96985 1.83794 1.34758 1.31719 1.56777 1.24461 0.99164 0.82546 0.99052 1.21626 0.94338 0.86100 0.96617 0.93888 0.93715 0.94104 0.92363 0.92591 0.91635 0.91260 0.90717 0.91257 0.77010 0.82258 0.77451 0.77211 0.96502 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.61 10.31 55.49 0.57 -27.04 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.83 3.40 -170.03 -0.58 -16.41 16 10 C 0.18 4.33 5.37 -3.06 -0.02 4.32 16 11 C -0.14 -2.50 6.42 -24.90 -0.16 -2.66 16 12 C -0.10 -1.67 3.04 -88.47 -0.27 -1.94 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.12 -1.40 4.84 -26.73 -0.13 -1.53 16 15 C 0.12 1.49 5.55 -4.04 -0.02 1.47 16 16 N -0.73 -7.68 5.55 -61.40 -0.34 -8.02 16 17 C 0.58 7.58 7.81 -12.54 -0.10 7.48 16 18 O -0.53 -9.31 16.98 5.27 0.09 -9.22 16 19 C -0.23 -2.39 6.31 -103.28 -0.65 -3.04 16 20 C -0.17 -1.54 11.01 -37.46 -0.41 -1.95 16 21 C -0.04 -0.28 12.03 29.30 0.35 0.07 16 22 O -0.18 -1.33 10.52 7.63 0.08 -1.25 16 23 C 0.02 0.13 11.61 30.08 0.35 0.48 16 24 C 0.14 2.89 6.04 -2.50 -0.02 2.87 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 27 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.93 8.04 -51.93 -0.42 0.52 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.07 1.09 7.60 -51.93 -0.39 0.69 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.40 2.77 7.44 -40.82 -0.30 2.47 16 35 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.21 0.64 7.47 -52.49 -0.39 0.25 16 38 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 39 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -35.54 327.79 -7.20 -42.73 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.61 Total: -1.82 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.32 Total: -1.44 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.35 Total: -51.47 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.17 Total: -10.47 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.54 -7.20 -42.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493994717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.725 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds