Wall clock time and date at job start Tue Mar 31 2020 00:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48498 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46971 * 300.00190 * 3 2 1 6 6 H 1.48506 * 109.46731 * 59.99680 * 3 2 1 7 7 C 1.38819 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99690 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64676 * 359.97438 * 9 7 2 11 11 C 1.54329 * 107.27128 * 178.97349 * 10 9 7 12 12 C 1.55153 * 102.94091 * 337.80656 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.39176 * 12 11 10 14 14 C 1.52997 * 111.00740 * 153.57364 * 12 11 10 15 15 C 1.53002 * 109.47535 * 178.17610 * 14 12 11 16 16 N 1.46494 * 109.47001 * 180.02562 * 15 14 12 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 14 18 18 O 1.21610 * 119.99835 * 0.02562 * 17 16 15 19 19 C 1.47382 * 119.99879 * 179.97438 * 17 16 15 20 20 C 1.47016 * 127.19106 * 179.70432 * 19 17 16 21 21 C 1.34178 * 105.95478 * 179.89360 * 20 19 17 22 22 O 1.34224 * 109.12226 * 0.38140 * 21 20 19 23 23 C 1.33652 * 110.90757 * 359.74547 * 22 21 20 24 24 C 1.47463 * 125.62740 * 179.97438 * 9 7 2 25 25 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.88402 * 59.55554 * 10 9 7 27 27 H 1.09004 * 110.01104 * 298.46079 * 10 9 7 28 28 H 1.09000 * 110.71810 * 219.44152 * 11 10 9 29 29 H 1.09002 * 110.86890 * 96.23919 * 11 10 9 30 30 H 1.09005 * 109.46889 * 58.17935 * 14 12 11 31 31 H 1.08996 * 109.47223 * 298.18714 * 14 12 11 32 32 H 1.09005 * 109.46767 * 60.00250 * 15 14 12 33 33 H 1.09002 * 109.47113 * 300.00590 * 15 14 12 34 34 H 0.96995 * 120.00292 * 0.27801 * 16 15 14 35 35 H 1.08000 * 127.02487 * 0.02562 * 20 19 17 36 36 H 1.07996 * 125.44017 * 180.12223 * 21 20 19 37 37 H 1.07998 * 125.79849 * 180.02562 * 23 22 21 38 38 H 1.09005 * 110.34772 * 85.25327 * 24 9 7 39 39 H 1.09001 * 110.40822 * 322.91910 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4486 -4.0441 -0.0259 12 6 0.8517 -4.6563 -0.6103 13 1 0.8565 -4.5974 -1.6988 14 6 1.0368 -6.1009 -0.1415 15 6 2.3025 -6.6840 -0.7732 16 7 2.4792 -8.0674 -0.3247 17 6 3.5352 -8.7857 -0.7555 18 8 4.3414 -8.2852 -1.5161 19 6 3.7134 -10.1772 -0.3039 20 6 4.7954 -11.1006 -0.6757 21 6 4.5435 -12.2457 -0.0233 22 8 3.4177 -12.1047 0.6938 23 6 2.9056 -10.8796 0.5417 24 6 1.9340 -3.7314 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5576 -2.0524 -0.8832 27 1 -0.5568 -2.0837 0.9010 28 1 -1.2986 -4.2516 -0.6759 29 1 -0.6335 -4.4202 0.9804 30 1 0.1736 -6.6942 -0.4433 31 1 1.1300 -6.1214 0.9443 32 1 3.1657 -6.0907 -0.4714 33 1 2.2092 -6.6635 -1.8590 34 1 1.8344 -8.4675 0.2793 35 1 5.6248 -10.8978 -1.3371 36 1 5.1476 -13.1396 -0.0711 37 1 2.0054 -10.5086 1.0092 38 1 2.1674 -4.0417 1.0191 39 1 2.8332 -3.7413 -0.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493994717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:46 Heat of formation + Delta-G solvation = -29.346784 kcal Electronic energy + Delta-G solvation = -20684.312127 eV Core-core repulsion = 17399.995302 eV Total energy + Delta-G solvation = -3284.316825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.44494 -40.54082 -39.35919 -36.47907 -34.80311 -33.84971 -32.51120 -31.03407 -30.37689 -28.16795 -26.63423 -24.73929 -23.33196 -22.36003 -21.83282 -21.42982 -20.67413 -19.32312 -18.86429 -17.27350 -17.12597 -16.88412 -16.76407 -16.50328 -16.09934 -15.68743 -15.51839 -14.97188 -14.43159 -14.10418 -13.85618 -13.82348 -13.68291 -13.45013 -13.19358 -13.06802 -12.82183 -12.66326 -12.23957 -11.97997 -11.80879 -11.60054 -11.38797 -11.31796 -11.10794 -10.85289 -10.71808 -10.15387 -9.70665 -8.88925 -7.86179 -5.21151 0.38330 1.14489 1.43743 1.44842 1.55466 2.01517 2.20278 2.33116 2.48567 3.31674 3.64074 3.68034 3.78490 3.82297 3.99307 4.11979 4.18489 4.35650 4.37910 4.57190 4.62523 4.70965 4.76475 4.79529 4.91866 5.01147 5.05103 5.14174 5.17817 5.26735 5.33139 5.40772 5.44590 5.53832 5.71738 5.80043 6.01126 6.20889 6.55004 7.11002 7.20947 7.78941 8.42904 9.24369 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038546 B = 0.002766 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.229747 B =10119.543289 C =10602.134323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.632 5.632 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.071 0.929 14 C -0.098 4.098 15 C 0.123 3.877 16 N -0.707 5.707 17 C 0.579 3.421 18 O -0.593 6.593 19 C -0.273 4.273 20 C -0.203 4.203 21 C -0.022 4.022 22 O -0.176 6.176 23 C 0.050 3.950 24 C 0.132 3.868 25 H 0.247 0.753 26 H 0.006 0.994 27 H 0.004 0.996 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.417 0.583 35 H 0.150 0.850 36 H 0.247 0.753 37 H 0.254 0.746 38 H 0.026 0.974 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 -27.427 2.712 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.089 0.911 14 C -0.136 4.136 15 C -0.001 4.001 16 N -0.359 5.359 17 C 0.368 3.632 18 O -0.475 6.475 19 C -0.278 4.278 20 C -0.223 4.223 21 C -0.087 4.087 22 O -0.071 6.071 23 C -0.021 4.021 24 C 0.007 3.993 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.022 0.978 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.255 0.745 35 H 0.167 0.833 36 H 0.262 0.738 37 H 0.270 0.730 38 H 0.044 0.956 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.405 -27.079 2.359 27.288 hybrid contribution 0.399 1.691 -0.161 1.745 sum 2.804 -25.388 2.198 25.637 Atomic orbital electron populations 1.70202 1.06237 1.25152 1.58497 1.25665 0.96693 1.01038 1.02767 0.85011 0.78092 0.79423 0.76834 1.19201 1.21787 1.21666 1.19501 0.90910 0.84068 1.42720 0.90426 1.44869 1.02758 1.01261 1.86954 1.20949 0.83499 0.92675 0.97380 1.22758 0.97312 0.94374 1.01486 1.22159 0.94910 0.93853 0.99694 0.91081 1.21591 0.96845 0.93644 1.01479 1.21314 0.98645 0.80988 0.99129 1.45675 1.26670 1.13761 1.49839 1.17739 0.80741 0.85107 0.79597 1.90774 1.45536 1.72929 1.38246 1.21539 1.02145 0.95481 1.08588 1.22971 1.00941 0.93468 1.04911 1.24572 0.88172 1.01101 0.94883 1.83850 1.34898 1.31754 1.56569 1.25148 0.98889 0.81532 0.96527 1.21854 0.95388 0.84771 0.97237 0.94412 0.97562 0.97758 0.89905 0.90301 0.88119 0.89753 0.93212 0.92372 0.74492 0.83268 0.73752 0.73043 0.95620 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.86 10.31 21.65 0.22 -58.63 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 3 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.24 -14.21 10.28 84.04 0.86 -13.35 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.62 3.40 -691.86 -2.35 -35.97 16 10 C 0.18 9.01 5.37 86.73 0.47 9.48 16 11 C -0.12 -4.12 6.42 31.78 0.20 -3.92 16 12 C -0.09 -2.70 3.04 -9.40 -0.03 -2.73 16 13 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 14 C -0.10 -2.00 4.84 30.59 0.15 -1.85 16 15 C 0.12 2.92 5.55 86.38 0.48 3.40 16 16 N -0.71 -13.42 5.55 -466.41 -2.59 -16.01 16 17 C 0.58 14.82 7.81 86.65 0.68 15.50 16 18 O -0.59 -21.51 16.98 -4.06 -0.07 -21.57 16 19 C -0.27 -5.25 6.31 -18.99 -0.12 -5.37 16 20 C -0.20 -3.66 11.01 23.65 0.26 -3.40 16 21 C -0.02 -0.24 12.03 66.89 0.80 0.57 16 22 O -0.18 -2.04 10.52 4.39 0.05 -1.99 16 23 C 0.05 0.53 11.61 67.39 0.78 1.31 16 24 C 0.13 5.45 6.04 86.85 0.52 5.97 16 25 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 27 H 0.00 0.24 7.50 -2.38 -0.02 0.22 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 30 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 32 H 0.05 1.44 7.60 -2.38 -0.02 1.42 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.42 4.13 7.44 -92.71 -0.69 3.44 16 35 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.25 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.25 0.15 7.47 -2.91 -0.02 0.13 16 38 H 0.03 1.03 7.96 -2.38 -0.02 1.01 16 39 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -82.97 327.79 3.18 -79.79 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.36 Total: 3.06 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.53 Total: 2.01 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -4.71 Total: -110.62 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.02 Total: -23.56 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -82.97 3.18 -79.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493994717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.440 kcal (2) G-P(sol) polarization free energy of solvation -82.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds