Wall clock time and date at job start Tue Mar 31 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47379 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.47076 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.47144 * 149.99566 * 3 2 1 7 7 C 1.38813 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00161 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99766 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.88842 * 57.42584 * 12 11 10 14 14 C 1.55162 * 111.00665 * 181.34615 * 12 11 10 15 15 C 1.54338 * 103.01965 * 153.37880 * 14 12 11 16 16 N 1.47018 * 107.26804 * 338.14403 * 15 14 12 17 17 C 1.34772 * 125.65028 * 178.84904 * 16 15 14 18 18 O 1.21695 * 120.00150 * 179.68979 * 17 16 15 19 19 C 1.46659 * 120.00066 * 359.69194 * 17 16 15 20 20 C 1.36538 * 125.99169 * 179.97438 * 19 17 16 21 21 C 1.40368 * 106.71128 * 179.77035 * 20 19 17 22 22 C 1.35130 * 107.11095 * 0.41135 * 21 20 19 23 23 O 1.33936 * 108.76939 * 359.58167 * 22 21 20 24 24 C 1.47436 * 108.70257 * 358.58449 * 16 15 14 25 25 H 0.97002 * 119.99941 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.47219 * 60.00110 * 10 9 7 28 28 H 1.08998 * 109.47388 * 300.00286 * 10 9 7 29 29 H 1.08998 * 109.47771 * 59.99884 * 11 10 9 30 30 H 1.09001 * 109.46827 * 299.99782 * 11 10 9 31 31 H 1.08996 * 110.72011 * 271.94131 * 14 12 11 32 32 H 1.09004 * 110.71604 * 35.03928 * 14 12 11 33 33 H 1.09001 * 109.98818 * 218.66643 * 15 14 12 34 34 H 1.08998 * 109.77633 * 97.49852 * 15 14 12 35 35 H 1.08001 * 126.64254 * 0.02562 * 20 19 17 36 36 H 1.07993 * 126.44574 * 180.25907 * 21 20 19 37 37 H 1.08002 * 125.61768 * 179.85474 * 22 21 20 38 38 H 1.08998 * 110.36550 * 143.19308 * 24 16 15 39 39 H 1.08996 * 110.36428 * 265.41091 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8287 -6.1447 0.0005 13 1 2.4972 -6.2071 0.8592 14 6 0.8527 -7.3504 -0.0341 15 6 1.6928 -8.4587 -0.7033 16 7 2.7635 -7.7964 -1.4626 17 6 3.7249 -8.4200 -2.1719 18 8 4.5609 -7.7674 -2.7687 19 6 3.7635 -9.8851 -2.2247 20 6 4.6775 -10.6398 -2.9024 21 6 4.3411 -11.9832 -2.6735 22 6 3.2447 -11.9894 -1.8836 23 8 2.9018 -10.7234 -1.6124 24 6 2.6075 -6.3368 -1.3246 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7145 0.8905 28 1 2.6847 -3.7145 -0.8894 29 1 0.4373 -4.7618 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 0.5618 -7.6403 0.9755 32 1 -0.0262 -7.1179 -0.6355 33 1 1.0678 -9.0442 -1.3776 34 1 2.1253 -9.1055 0.0601 35 1 5.5024 -10.2740 -3.4960 36 1 4.8593 -12.8489 -3.0585 37 1 2.7321 -12.8702 -1.5260 38 1 3.5834 -5.8551 -1.2643 39 1 2.0381 -5.9353 -2.1628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501525144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:40 Heat of formation + Delta-G solvation = -9.494422 kcal Electronic energy + Delta-G solvation = -20921.425490 eV Core-core repulsion = 17637.969528 eV Total energy + Delta-G solvation = -3283.455962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.97647 -40.01527 -37.87191 -35.16679 -33.48378 -32.96244 -31.16592 -30.16935 -29.52721 -27.17969 -24.83550 -23.27771 -22.38245 -22.05173 -21.26630 -20.22603 -19.93538 -18.03193 -17.11759 -16.80523 -16.67620 -16.15156 -15.45372 -14.85833 -14.60622 -13.98547 -13.65432 -13.54076 -13.38805 -13.31036 -13.10351 -12.97442 -12.89416 -12.67104 -12.21217 -11.69771 -11.34806 -11.06044 -10.81406 -10.65981 -10.51133 -10.38861 -10.37624 -10.33414 -9.97135 -9.65084 -9.11467 -8.83834 -8.74321 -6.88982 -5.73768 -3.02190 0.79224 2.03753 2.35419 2.87985 2.98404 3.46525 3.51489 3.53176 4.16884 4.46923 4.51773 4.58184 4.62521 4.73119 4.80229 5.11089 5.24794 5.32636 5.43450 5.44925 5.54206 5.56290 5.60071 5.67091 5.80366 5.83293 5.89377 5.98373 6.05520 6.10349 6.24910 6.38160 6.38507 6.55579 6.86244 6.90237 7.25512 7.73621 7.84971 8.45625 9.56540 10.14813 10.49234 11.49335 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.002876 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.803965 B = 9732.182871 C =10293.737538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.128 4.128 15 C 0.103 3.897 16 N -0.609 5.609 17 C 0.612 3.388 18 O -0.520 6.520 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.225 4.225 22 C -0.013 4.013 23 O -0.160 6.160 24 C 0.110 3.890 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.209 0.791 38 H 0.085 0.915 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -27.380 -1.896 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.020 4.020 16 N -0.342 5.342 17 C 0.400 3.600 18 O -0.398 6.398 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.244 4.244 22 C -0.083 4.083 23 O -0.055 6.055 24 C -0.011 4.011 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.226 0.774 38 H 0.103 0.897 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.679 -26.815 -2.064 27.145 hybrid contribution 0.248 0.621 -0.111 0.678 sum 3.927 -26.194 -2.176 26.576 Atomic orbital electron populations 1.69663 1.05115 1.25611 1.58014 1.24746 0.95547 0.97721 1.03133 0.86178 0.78646 0.83785 0.77545 1.21702 1.21781 1.20752 1.19252 0.91072 0.84212 1.42389 0.91176 1.42367 1.05869 1.00094 1.89515 1.20688 0.93569 0.85566 0.97886 1.21687 0.98571 0.92375 1.02634 1.22355 0.96887 0.95057 0.97065 0.89548 1.22744 0.98147 0.94211 1.01508 1.22118 0.88808 0.95810 0.95260 1.48418 1.28122 1.08684 1.48965 1.16173 0.81043 0.83384 0.79390 1.90911 1.39117 1.64333 1.45413 1.22080 0.95352 0.90811 1.03947 1.21989 0.99930 0.92360 1.00205 1.21863 1.00004 0.97840 1.04651 1.24434 0.98182 0.85322 1.00342 1.84163 1.47162 1.16072 1.58126 1.22497 1.01892 0.78660 0.98100 0.93552 0.78327 0.96409 0.96235 0.91515 0.91194 0.89731 0.90108 0.91119 0.91086 0.82218 0.82638 0.77404 0.89655 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.69 13.06 55.49 0.72 -27.97 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.95 5.60 -59.91 -0.34 -19.28 16 10 C 0.15 3.02 6.11 -4.04 -0.02 2.99 16 11 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16 12 C -0.09 -1.15 3.08 -88.47 -0.27 -1.42 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.13 -1.22 6.42 -24.89 -0.16 -1.38 16 15 C 0.10 1.00 5.55 -3.06 -0.02 0.99 16 16 N -0.61 -7.82 3.33 -172.06 -0.57 -8.39 16 17 C 0.61 8.75 7.82 -12.86 -0.10 8.65 16 18 O -0.52 -9.11 17.12 5.19 0.09 -9.02 16 19 C -0.07 -0.82 6.95 -36.80 -0.26 -1.08 16 20 C -0.12 -1.27 10.62 -39.39 -0.42 -1.69 16 21 C -0.22 -1.66 10.88 -39.89 -0.43 -2.09 16 22 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 23 O -0.16 -1.52 8.28 4.97 0.04 -1.48 16 24 C 0.11 1.49 5.56 -2.52 -0.01 1.48 16 25 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.40 7.46 -51.93 -0.39 0.02 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 33 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 34 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.21 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.09 1.28 7.96 -51.93 -0.41 0.86 16 39 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -34.24 329.23 -7.51 -41.75 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.68 Total: 4.29 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.71 Total: -2.67 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.18 Total: -55.64 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.13 Total: -10.50 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.24 -7.51 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501525144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.252 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds