Wall clock time and date at job start Tue Mar 31 2020 00:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47379 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.47076 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.47144 * 149.99566 * 3 2 1 7 7 C 1.38813 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00161 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99766 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47202 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.88842 * 57.42584 * 12 11 10 14 14 C 1.55162 * 111.00665 * 181.34615 * 12 11 10 15 15 C 1.54338 * 103.01965 * 153.37880 * 14 12 11 16 16 N 1.47018 * 107.26804 * 338.14403 * 15 14 12 17 17 C 1.34772 * 125.65028 * 178.84904 * 16 15 14 18 18 O 1.21695 * 120.00150 * 179.68979 * 17 16 15 19 19 C 1.46659 * 120.00066 * 359.69194 * 17 16 15 20 20 C 1.36538 * 125.99169 * 179.97438 * 19 17 16 21 21 C 1.40368 * 106.71128 * 179.77035 * 20 19 17 22 22 C 1.35130 * 107.11095 * 0.41135 * 21 20 19 23 23 O 1.33936 * 108.76939 * 359.58167 * 22 21 20 24 24 C 1.47436 * 108.70257 * 358.58449 * 16 15 14 25 25 H 0.97002 * 119.99941 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.47219 * 60.00110 * 10 9 7 28 28 H 1.08998 * 109.47388 * 300.00286 * 10 9 7 29 29 H 1.08998 * 109.47771 * 59.99884 * 11 10 9 30 30 H 1.09001 * 109.46827 * 299.99782 * 11 10 9 31 31 H 1.08996 * 110.72011 * 271.94131 * 14 12 11 32 32 H 1.09004 * 110.71604 * 35.03928 * 14 12 11 33 33 H 1.09001 * 109.98818 * 218.66643 * 15 14 12 34 34 H 1.08998 * 109.77633 * 97.49852 * 15 14 12 35 35 H 1.08001 * 126.64254 * 0.02562 * 20 19 17 36 36 H 1.07993 * 126.44574 * 180.25907 * 21 20 19 37 37 H 1.08002 * 125.61768 * 179.85474 * 22 21 20 38 38 H 1.08998 * 110.36550 * 143.19308 * 24 16 15 39 39 H 1.08996 * 110.36428 * 265.41091 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8287 -6.1447 0.0005 13 1 2.4972 -6.2071 0.8592 14 6 0.8527 -7.3504 -0.0341 15 6 1.6928 -8.4587 -0.7033 16 7 2.7635 -7.7964 -1.4626 17 6 3.7249 -8.4200 -2.1719 18 8 4.5609 -7.7674 -2.7687 19 6 3.7635 -9.8851 -2.2247 20 6 4.6775 -10.6398 -2.9024 21 6 4.3411 -11.9832 -2.6735 22 6 3.2447 -11.9894 -1.8836 23 8 2.9018 -10.7234 -1.6124 24 6 2.6075 -6.3368 -1.3246 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7145 0.8905 28 1 2.6847 -3.7145 -0.8894 29 1 0.4373 -4.7618 -0.8903 30 1 0.4368 -4.7621 0.8897 31 1 0.5618 -7.6403 0.9755 32 1 -0.0262 -7.1179 -0.6355 33 1 1.0678 -9.0442 -1.3776 34 1 2.1253 -9.1055 0.0601 35 1 5.5024 -10.2740 -3.4960 36 1 4.8593 -12.8489 -3.0585 37 1 2.7321 -12.8702 -1.5260 38 1 3.5834 -5.8551 -1.2643 39 1 2.0381 -5.9353 -2.1628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501525144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:39 Heat of formation + Delta-G solvation = -32.579897 kcal Electronic energy + Delta-G solvation = -20922.426551 eV Core-core repulsion = 17637.969528 eV Total energy + Delta-G solvation = -3284.457023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.65319 -41.03111 -38.97653 -36.88037 -34.66443 -34.02607 -32.80596 -30.98088 -30.76059 -28.52708 -26.24445 -24.82786 -23.34786 -22.75639 -22.57000 -21.28029 -20.84571 -19.17334 -18.88163 -17.63065 -17.57582 -17.09893 -16.65853 -16.34558 -15.93136 -15.36335 -15.22147 -14.98481 -14.51182 -14.22359 -14.13027 -13.93090 -13.81855 -13.57582 -13.33246 -13.02148 -12.98400 -12.82850 -12.34444 -12.18790 -12.01007 -11.72658 -11.59987 -11.50966 -11.42463 -11.05783 -10.93677 -9.98249 -9.57915 -9.01287 -7.97100 -5.25906 -0.00166 1.41856 1.46061 1.48108 1.54050 1.56568 2.02985 2.05801 2.54886 3.33398 3.36506 3.56821 3.70410 3.77899 3.94807 4.10548 4.15065 4.25500 4.30601 4.46974 4.53777 4.56166 4.65057 4.74073 4.81685 4.85943 4.90042 4.93151 4.95100 5.08653 5.12819 5.25742 5.36444 5.41191 5.45205 5.48394 5.87333 6.26294 6.29120 6.82170 7.32153 8.08466 8.32012 9.26491 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.002876 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.803965 B = 9732.182871 C =10293.737538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.748 5.748 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.091 0.909 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.610 5.610 17 C 0.604 3.396 18 O -0.571 6.571 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.234 4.234 22 C 0.013 3.987 23 O -0.163 6.163 24 C 0.108 3.892 25 H 0.252 0.748 26 H 0.375 0.625 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.258 0.742 38 H 0.062 0.938 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -30.024 -1.061 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.104 4.104 13 H 0.109 0.891 14 C -0.155 4.155 15 C -0.018 4.018 16 N -0.342 5.342 17 C 0.395 3.605 18 O -0.453 6.453 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.253 4.253 22 C -0.057 4.057 23 O -0.059 6.059 24 C -0.014 4.014 25 H 0.061 0.939 26 H 0.207 0.793 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.201 0.799 37 H 0.274 0.726 38 H 0.080 0.920 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.288 -29.500 -1.209 29.707 hybrid contribution 0.399 1.285 -0.389 1.400 sum 3.687 -28.215 -1.598 28.500 Atomic orbital electron populations 1.69808 1.06523 1.26177 1.59416 1.25580 0.96486 1.01117 1.03587 0.85137 0.77721 0.79421 0.77480 1.21415 1.21770 1.19550 1.19636 0.91437 0.85599 1.41417 0.91032 1.42592 1.05727 1.01294 1.89433 1.20870 0.94453 0.85252 0.97330 1.21519 0.97530 0.91839 1.02847 1.22212 0.97267 0.94686 0.96197 0.89052 1.22749 0.97314 0.92241 1.03164 1.22305 0.88082 0.95943 0.95496 1.48513 1.28510 1.08359 1.48772 1.16577 0.80551 0.84642 0.78759 1.90860 1.41036 1.65799 1.47608 1.21577 0.97438 0.89828 1.06834 1.22249 0.99275 0.94022 0.99309 1.22207 1.00736 0.97153 1.05183 1.25458 0.97150 0.85185 0.97880 1.84143 1.46744 1.16974 1.58008 1.22397 1.00752 0.79567 0.98732 0.93873 0.79270 0.96357 0.96847 0.91704 0.90495 0.87130 0.89532 0.89852 0.89695 0.82825 0.79902 0.72591 0.91981 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -39.15 5.60 -343.47 -1.92 -41.07 16 10 C 0.15 5.98 6.11 86.38 0.53 6.51 16 11 C -0.10 -2.96 4.84 30.59 0.15 -2.81 16 12 C -0.08 -1.96 3.08 -9.40 -0.03 -1.99 16 13 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 14 C -0.12 -1.91 6.42 31.79 0.20 -1.70 16 15 C 0.10 1.80 5.55 86.73 0.48 2.28 16 16 N -0.61 -15.69 3.33 -816.48 -2.72 -18.40 16 17 C 0.60 17.91 7.82 86.44 0.68 18.59 16 18 O -0.57 -21.43 17.12 -4.33 -0.07 -21.50 16 19 C -0.11 -2.43 6.95 24.07 0.17 -2.26 16 20 C -0.13 -2.54 10.62 22.39 0.24 -2.31 16 21 C -0.23 -2.78 10.88 22.07 0.24 -2.54 16 22 C 0.01 0.12 12.08 67.10 0.81 0.93 16 23 O -0.16 -2.69 8.28 -5.12 -0.04 -2.73 16 24 C 0.11 3.01 5.56 86.85 0.48 3.49 16 25 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.38 20.51 7.67 -92.71 -0.71 19.80 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.01 0.57 7.46 -2.39 -0.02 0.55 16 29 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.36 8.04 -2.38 -0.02 1.34 16 33 H 0.08 1.28 7.80 -2.39 -0.02 1.26 16 34 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.26 -0.41 8.06 -2.91 -0.02 -0.43 16 38 H 0.06 1.99 7.96 -2.39 -0.02 1.97 16 39 H 0.07 1.98 8.01 -2.39 -0.02 1.96 16 Total: -1.00 -76.56 329.23 3.14 -73.42 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.34 Total: 20.30 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.25 Total: 0.61 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -4.36 Total: -119.37 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.12 Total: -24.23 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -76.56 3.14 -73.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501525144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.839 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds