Wall clock time and date at job start Tue Mar 31 2020 00:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47241 * 300.00089 * 3 2 1 6 6 H 1.48496 * 109.47070 * 60.00392 * 3 2 1 7 7 C 1.38812 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99844 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46753 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.85070 * 43.80894 * 11 10 9 13 13 C 1.53782 * 113.61091 * 174.99956 * 11 10 9 14 14 C 1.53783 * 87.08214 * 139.97871 * 13 11 10 15 15 H 1.08996 * 113.61908 * 219.93535 * 14 13 11 16 16 N 1.46502 * 113.60987 * 89.11411 * 14 13 11 17 17 C 1.34781 * 119.99825 * 156.53402 * 16 14 13 18 18 O 1.21283 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99977 * 179.97438 * 17 16 14 20 20 C 1.50703 * 109.46972 * 179.97438 * 19 17 16 21 21 C 1.41376 * 126.58376 * 270.02072 * 20 19 17 22 22 C 1.34516 * 106.84089 * 179.97438 * 21 20 19 23 23 O 1.34298 * 108.42070 * 0.02562 * 22 21 20 24 24 C 1.34305 * 109.47744 * 359.97438 * 23 22 21 25 25 C 1.53785 * 87.17326 * 334.52892 * 14 13 11 26 26 H 0.97002 * 119.99877 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99977 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47102 * 60.00736 * 10 9 7 29 29 H 1.08997 * 109.47372 * 300.00458 * 10 9 7 30 30 H 1.08998 * 113.61521 * 25.43487 * 13 11 10 31 31 H 1.08998 * 113.62102 * 254.53022 * 13 11 10 32 32 H 0.97001 * 120.00576 * 336.53413 * 16 14 13 33 33 H 1.09003 * 109.47208 * 60.00327 * 19 17 16 34 34 H 1.08996 * 109.47426 * 299.99643 * 19 17 16 35 35 H 1.08003 * 126.57866 * 359.94100 * 21 20 19 36 36 H 1.08002 * 125.78796 * 180.02562 * 22 21 20 37 37 H 1.07996 * 125.78869 * 180.26180 * 24 23 22 38 38 H 1.08998 * 113.61520 * 140.02119 * 25 14 13 39 39 H 1.09005 * 113.61101 * 270.92571 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.2380 -4.6701 -0.6968 13 6 1.7303 -6.2000 -0.1241 14 6 0.7043 -6.7000 0.9066 15 1 1.1222 -7.3906 1.6391 16 7 -0.5389 -7.1906 0.3066 17 6 -1.3117 -8.0666 0.9789 18 8 -0.9778 -8.4491 2.0803 19 6 -2.5908 -8.5709 0.3619 20 6 -3.2614 -9.5313 1.3101 21 6 -3.0683 -10.9306 1.3685 22 6 -3.8586 -11.3922 2.3544 23 8 -4.5167 -10.3526 2.8927 24 6 -4.1583 -9.2215 2.2635 25 6 0.6153 -5.2492 1.4087 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 2.6845 -3.7146 0.8895 29 1 2.6847 -3.7146 -0.8904 30 1 2.7584 -6.2221 0.2373 31 1 1.6168 -6.6537 -1.1086 32 1 -0.8058 -6.8851 -0.5745 33 1 -2.3659 -9.0825 -0.5739 34 1 -3.2558 -7.7299 0.1656 35 1 -2.4126 -11.5166 0.7415 36 1 -3.9485 -12.4239 2.6610 37 1 -4.5248 -8.2307 2.4879 38 1 -0.3978 -4.9357 1.6606 39 1 1.3392 -5.0117 2.1883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506881410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:33 Heat of formation + Delta-G solvation = 7.339824 kcal Electronic energy + Delta-G solvation = -20546.653721 eV Core-core repulsion = 17263.927747 eV Total energy + Delta-G solvation = -3282.725974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.71372 -40.14103 -38.30940 -34.54240 -34.13335 -33.10414 -30.95981 -30.44815 -28.16549 -26.59117 -25.49357 -23.43741 -21.83019 -21.74228 -21.27808 -20.18735 -19.06406 -17.66080 -17.26528 -16.96936 -15.98833 -15.83553 -15.39336 -14.96848 -14.71970 -14.39186 -14.07345 -13.58642 -13.44758 -13.19061 -12.97344 -12.74768 -12.69277 -12.31324 -12.10069 -11.80465 -11.56236 -11.03171 -10.84297 -10.47568 -10.32830 -10.13399 -10.06793 -9.82765 -9.70381 -9.59309 -8.98243 -8.83784 -8.70138 -6.89525 -5.75680 -3.03683 1.61010 2.34345 2.59104 2.97630 3.24414 3.43669 3.49266 3.51534 4.51024 4.57061 4.58920 4.68063 4.76610 4.83329 4.91430 5.12045 5.15125 5.19193 5.24583 5.48735 5.58884 5.75151 5.80243 5.87757 5.94694 5.97329 6.02710 6.11900 6.25145 6.29297 6.33274 6.43665 6.65666 6.79394 6.93329 6.94963 7.47851 7.71461 8.20597 8.43719 9.54738 10.14007 10.48412 11.47445 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034491 B = 0.002699 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.601297 B =10373.098006 C =10882.904561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.088 0.912 13 C -0.138 4.138 14 C 0.116 3.884 15 H 0.097 0.903 16 N -0.711 5.711 17 C 0.514 3.486 18 O -0.533 6.533 19 C -0.072 4.072 20 C -0.164 4.164 21 C -0.199 4.199 22 C -0.046 4.046 23 O -0.177 6.177 24 C -0.025 4.025 25 C -0.139 4.139 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.201 0.799 37 H 0.201 0.799 38 H 0.068 0.932 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 -22.648 -0.315 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.132 4.132 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.011 3.989 15 H 0.115 0.885 16 N -0.363 5.363 17 C 0.300 3.700 18 O -0.409 6.409 19 C -0.112 4.112 20 C -0.166 4.166 21 C -0.218 4.218 22 C -0.113 4.113 23 O -0.073 6.073 24 C -0.093 4.093 25 C -0.177 4.177 26 H 0.064 0.936 27 H 0.216 0.784 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.218 0.782 38 H 0.086 0.914 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.519 -22.835 0.728 23.758 hybrid contribution 0.226 1.218 -0.642 1.395 sum -6.292 -21.617 0.087 22.514 Atomic orbital electron populations 1.69670 1.05108 1.25466 1.58082 1.24743 0.95540 0.97701 1.03204 0.86118 0.78784 0.84150 0.77173 1.20574 1.21897 1.21882 1.19295 0.91063 0.84265 1.42240 0.91185 1.42360 1.05841 1.00020 1.89384 1.20641 0.93034 0.85233 0.97658 1.22802 0.99072 0.94188 0.97088 0.89420 1.23302 0.98884 0.96613 0.98841 1.21921 0.84552 0.95906 0.96543 0.88531 1.45711 1.23430 1.45798 1.21315 1.20581 0.85157 0.78446 0.85796 1.90715 1.72611 1.57633 1.19965 1.20002 0.94349 0.98667 0.98145 1.19782 1.01398 0.94284 1.01137 1.21654 1.03634 0.94399 1.02142 1.23940 0.97656 0.92329 0.97421 1.84062 1.55891 1.15440 1.51868 1.23835 1.00571 0.89856 0.95019 1.23453 1.02398 0.94250 0.97620 0.93618 0.78350 0.96222 0.96416 0.88782 0.91282 0.76424 0.87931 0.87844 0.83693 0.78277 0.78244 0.91369 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16 10 C 0.16 3.22 6.10 -4.04 -0.02 3.19 16 11 C -0.11 -1.73 3.65 -89.66 -0.33 -2.05 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.14 -1.65 7.38 -25.92 -0.19 -1.84 16 14 C 0.12 1.47 4.30 -67.11 -0.29 1.18 16 15 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 16 N -0.71 -7.79 5.26 -53.01 -0.28 -8.07 16 17 C 0.51 6.25 7.82 -10.98 -0.09 6.16 16 18 O -0.53 -8.81 15.65 5.56 0.09 -8.72 16 19 C -0.07 -0.62 6.22 -29.03 -0.18 -0.80 16 20 C -0.16 -1.72 4.66 -104.74 -0.49 -2.21 16 21 C -0.20 -1.96 10.87 -39.70 -0.43 -2.39 16 22 C -0.05 -0.41 12.09 29.42 0.36 -0.06 16 23 O -0.18 -1.90 10.65 5.72 0.06 -1.84 16 24 C -0.02 -0.25 12.01 29.42 0.35 0.10 16 25 C -0.14 -2.07 7.45 -25.77 -0.19 -2.27 16 26 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 28 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.40 3.43 8.70 -40.82 -0.36 3.08 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -35.16 336.01 -7.10 -42.26 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.65 Total: 8.86 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.75 Total: -8.42 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.11 Total: -54.74 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.15 Total: -10.57 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.16 -7.10 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506881410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.596 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds