Wall clock time and date at job start Tue Mar 31 2020 00:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47241 * 300.00089 * 3 2 1 6 6 H 1.48496 * 109.47070 * 60.00392 * 3 2 1 7 7 C 1.38812 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99844 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46753 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.85070 * 43.80894 * 11 10 9 13 13 C 1.53782 * 113.61091 * 174.99956 * 11 10 9 14 14 C 1.53783 * 87.08214 * 139.97871 * 13 11 10 15 15 H 1.08996 * 113.61908 * 219.93535 * 14 13 11 16 16 N 1.46502 * 113.60987 * 89.11411 * 14 13 11 17 17 C 1.34781 * 119.99825 * 156.53402 * 16 14 13 18 18 O 1.21283 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99977 * 179.97438 * 17 16 14 20 20 C 1.50703 * 109.46972 * 179.97438 * 19 17 16 21 21 C 1.41376 * 126.58376 * 270.02072 * 20 19 17 22 22 C 1.34516 * 106.84089 * 179.97438 * 21 20 19 23 23 O 1.34298 * 108.42070 * 0.02562 * 22 21 20 24 24 C 1.34305 * 109.47744 * 359.97438 * 23 22 21 25 25 C 1.53785 * 87.17326 * 334.52892 * 14 13 11 26 26 H 0.97002 * 119.99877 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99977 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47102 * 60.00736 * 10 9 7 29 29 H 1.08997 * 109.47372 * 300.00458 * 10 9 7 30 30 H 1.08998 * 113.61521 * 25.43487 * 13 11 10 31 31 H 1.08998 * 113.62102 * 254.53022 * 13 11 10 32 32 H 0.97001 * 120.00576 * 336.53413 * 16 14 13 33 33 H 1.09003 * 109.47208 * 60.00327 * 19 17 16 34 34 H 1.08996 * 109.47426 * 299.99643 * 19 17 16 35 35 H 1.08003 * 126.57866 * 359.94100 * 21 20 19 36 36 H 1.08002 * 125.78796 * 180.02562 * 22 21 20 37 37 H 1.07996 * 125.78869 * 180.26180 * 24 23 22 38 38 H 1.08998 * 113.61520 * 140.02119 * 25 14 13 39 39 H 1.09005 * 113.61101 * 270.92571 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.2380 -4.6701 -0.6968 13 6 1.7303 -6.2000 -0.1241 14 6 0.7043 -6.7000 0.9066 15 1 1.1222 -7.3906 1.6391 16 7 -0.5389 -7.1906 0.3066 17 6 -1.3117 -8.0666 0.9789 18 8 -0.9778 -8.4491 2.0803 19 6 -2.5908 -8.5709 0.3619 20 6 -3.2614 -9.5313 1.3101 21 6 -3.0683 -10.9306 1.3685 22 6 -3.8586 -11.3922 2.3544 23 8 -4.5167 -10.3526 2.8927 24 6 -4.1583 -9.2215 2.2635 25 6 0.6153 -5.2492 1.4087 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 2.6845 -3.7146 0.8895 29 1 2.6847 -3.7146 -0.8904 30 1 2.7584 -6.2221 0.2373 31 1 1.6168 -6.6537 -1.1086 32 1 -0.8058 -6.8851 -0.5745 33 1 -2.3659 -9.0825 -0.5739 34 1 -3.2558 -7.7299 0.1656 35 1 -2.4126 -11.5166 0.7415 36 1 -3.9485 -12.4239 2.6610 37 1 -4.5248 -8.2307 2.4879 38 1 -0.3978 -4.9357 1.6606 39 1 1.3392 -5.0117 2.1883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506881410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:32 Heat of formation + Delta-G solvation = -17.151325 kcal Electronic energy + Delta-G solvation = -20547.715737 eV Core-core repulsion = 17263.927747 eV Total energy + Delta-G solvation = -3283.787990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.42592 -41.18936 -39.43524 -36.33932 -34.91119 -34.36754 -32.79552 -31.24365 -29.11732 -28.08656 -26.61995 -25.22507 -23.13205 -22.49424 -22.36195 -20.96946 -20.27851 -19.06321 -18.42496 -18.07529 -16.96726 -16.70278 -16.65989 -16.30324 -15.78209 -15.67583 -15.43148 -15.10811 -14.65312 -14.55345 -13.96663 -13.78209 -13.64315 -13.36374 -13.27111 -13.11153 -12.91138 -12.71291 -12.40311 -12.12563 -11.93155 -11.73274 -11.34689 -11.14386 -11.07862 -10.86152 -10.50781 -9.99600 -9.41264 -8.97702 -7.95390 -5.23450 0.89319 1.47060 1.47802 1.57918 1.60346 1.66443 2.30271 2.40140 2.55962 3.37774 3.60817 3.61372 3.79805 3.93871 3.95204 3.98887 4.05979 4.19872 4.34140 4.57889 4.58473 4.65113 4.77140 4.81271 4.85594 4.93447 4.93707 4.99885 5.12715 5.16407 5.28461 5.32101 5.39251 5.50071 5.61608 5.71207 6.22193 6.27907 6.61122 7.30880 7.33746 8.11734 8.34141 9.28461 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034491 B = 0.002699 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.601297 B =10373.098006 C =10882.904561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 H 0.089 0.911 13 C -0.116 4.116 14 C 0.126 3.874 15 H 0.088 0.912 16 N -0.702 5.702 17 C 0.513 3.487 18 O -0.582 6.582 19 C -0.064 4.064 20 C -0.182 4.182 21 C -0.220 4.220 22 C -0.048 4.048 23 O -0.193 6.193 24 C -0.045 4.045 25 C -0.144 4.144 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.416 0.584 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.233 0.767 37 H 0.216 0.784 38 H 0.051 0.949 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -23.662 -1.407 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.107 0.893 13 C -0.154 4.154 14 C 0.020 3.980 15 H 0.106 0.894 16 N -0.353 5.353 17 C 0.301 3.699 18 O -0.461 6.461 19 C -0.104 4.104 20 C -0.183 4.183 21 C -0.239 4.239 22 C -0.115 4.115 23 O -0.089 6.089 24 C -0.112 4.112 25 C -0.183 4.183 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.176 0.824 36 H 0.249 0.751 37 H 0.233 0.767 38 H 0.070 0.930 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.912 -23.870 -0.402 24.594 hybrid contribution 0.071 1.475 -0.275 1.502 sum -5.841 -22.395 -0.677 23.154 Atomic orbital electron populations 1.69819 1.06582 1.25962 1.59722 1.25574 0.96447 1.01126 1.03871 0.85075 0.78231 0.79800 0.76683 1.19071 1.21872 1.22141 1.19696 0.91505 0.85543 1.40867 0.90758 1.42592 1.05623 1.01276 1.89277 1.20836 0.93844 0.84631 0.97430 1.22727 0.98550 0.94208 0.97341 0.89308 1.23208 0.98816 0.93468 0.99926 1.21709 0.85512 0.94083 0.96655 0.89390 1.45646 1.22712 1.45230 1.21759 1.21201 0.85834 0.77741 0.85118 1.90697 1.73877 1.59392 1.22175 1.20066 0.92605 0.99308 0.98407 1.20141 1.01545 0.95048 1.01595 1.21988 1.04384 0.94558 1.02960 1.24661 0.96731 0.93289 0.96811 1.84054 1.56454 1.16038 1.52365 1.24281 1.01130 0.90502 0.95284 1.23462 1.01159 0.96324 0.97349 0.94030 0.79504 0.96412 0.95972 0.87870 0.88747 0.74712 0.85200 0.85630 0.82359 0.75056 0.76739 0.93029 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 7 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.07 4.04 7.83 -2.92 -0.02 4.01 16 9 N -0.75 -37.98 5.60 -343.46 -1.92 -39.90 16 10 C 0.16 6.18 6.10 86.38 0.53 6.71 16 11 C -0.11 -3.21 3.65 -10.17 -0.04 -3.25 16 12 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.12 -2.46 7.38 31.12 0.23 -2.23 16 14 C 0.13 3.02 4.30 45.52 0.20 3.21 16 15 H 0.09 2.34 7.50 -2.39 -0.02 2.32 16 16 N -0.70 -14.03 5.26 -440.02 -2.32 -16.34 16 17 C 0.51 11.78 7.82 87.66 0.69 12.46 16 18 O -0.58 -19.09 15.65 -3.04 -0.05 -19.14 16 19 C -0.06 -0.98 6.22 29.10 0.18 -0.80 16 20 C -0.18 -3.61 4.66 -19.94 -0.09 -3.70 16 21 C -0.22 -4.07 10.87 22.19 0.24 -3.82 16 22 C -0.05 -0.81 12.09 66.97 0.81 -0.01 16 23 O -0.19 -4.07 10.65 -2.45 -0.03 -4.10 16 24 C -0.04 -0.89 12.01 66.97 0.80 -0.09 16 25 C -0.14 -4.27 7.45 31.21 0.23 -4.04 16 26 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16 28 H 0.02 0.71 7.85 -2.39 -0.02 0.69 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.42 5.97 8.70 -92.71 -0.81 5.16 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.23 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.22 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.52 7.90 -2.38 -0.02 2.50 16 Total: -1.00 -76.27 336.01 2.63 -73.64 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.45 Total: 29.35 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.08 Total: -12.55 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.96 Total: -115.63 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.27 2.63 -73.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506881410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.489 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds