Wall clock time and date at job start Tue Mar 31 2020 00:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99859 * 3 2 1 5 5 H 1.48501 * 109.47435 * 30.00108 * 3 2 1 6 6 H 1.48504 * 109.46864 * 149.99861 * 3 2 1 7 7 C 1.37873 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99965 * 179.72615 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 O 1.42898 * 109.46797 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99890 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47271 * 179.97438 * 19 18 17 21 21 N 1.46899 * 109.47141 * 65.00015 * 20 19 18 22 22 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 23 23 C 1.38112 * 119.92493 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99813 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 26 26 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 27 27 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 29 29 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 30 30 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 31 31 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 32 32 H 1.09001 * 109.47186 * 300.00440 * 19 18 17 33 33 H 1.09006 * 109.46984 * 59.99742 * 19 18 17 34 34 H 1.09000 * 109.47223 * 185.00182 * 20 19 18 35 35 H 1.08998 * 109.47387 * 305.00110 * 20 19 18 36 36 H 1.00905 * 110.99855 * 56.04145 * 21 20 19 37 37 H 1.00893 * 111.00520 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.04284 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.96508 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0057 10 6 4.0138 -2.6147 -0.0107 11 6 4.2542 -3.2657 1.1855 12 6 4.7100 -4.5695 1.1844 13 6 4.9369 -5.2231 -0.0196 14 7 5.4042 -6.5420 -0.0243 15 6 6.2291 -6.9614 -1.0042 16 8 6.6427 -6.1726 -1.8275 17 6 6.6374 -8.4102 -1.0769 18 8 7.5074 -8.6043 -2.1938 19 6 7.9559 -9.9517 -2.3539 20 6 8.8752 -10.0417 -3.5736 21 7 10.0908 -9.2539 -3.3297 22 6 4.6997 -4.5649 -1.2192 23 6 4.2384 -3.2630 -1.2113 24 1 -0.4850 0.8401 -0.0004 25 1 3.8712 -0.6784 -0.8961 26 1 3.8785 -0.6819 0.8837 27 1 4.0813 -2.7555 2.1215 28 1 4.8936 -5.0788 2.1190 29 1 5.1345 -7.1546 0.6779 30 1 7.1560 -8.6880 -0.1593 31 1 5.7501 -9.0321 -1.1955 32 1 8.5023 -10.2610 -1.4629 33 1 7.0961 -10.6061 -2.4983 34 1 9.1460 -11.0830 -3.7484 35 1 8.3573 -9.6492 -4.4487 36 1 10.5549 -9.5568 -2.4865 37 1 10.7150 -9.2977 -4.1212 38 1 4.8756 -5.0703 -2.1573 39 1 4.0541 -2.7504 -2.1438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522758406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:19 Heat of formation + Delta-G solvation = -53.751748 kcal Electronic energy + Delta-G solvation = -20351.189539 eV Core-core repulsion = 17065.814435 eV Total energy + Delta-G solvation = -3285.375103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35243 -38.61651 -37.71849 -34.95675 -34.72275 -32.95020 -31.00920 -30.33915 -29.30372 -27.70463 -26.31019 -22.98129 -22.39580 -22.38502 -20.78980 -19.95590 -17.78329 -17.44087 -16.87752 -16.73625 -16.46350 -16.05176 -15.06680 -14.99212 -14.69455 -14.22862 -14.10503 -13.97908 -13.44427 -13.17917 -12.90646 -12.78622 -12.43854 -12.41784 -12.15197 -11.64715 -11.47834 -11.41878 -10.81019 -10.47161 -10.16643 -10.09995 -10.02618 -9.80344 -9.46865 -9.28884 -9.01946 -8.55441 -8.31635 -7.39629 -6.04691 -4.03473 1.81111 2.03101 2.62181 2.70836 3.31992 3.39400 3.42845 3.71316 4.14887 4.42046 4.44594 4.52303 4.69984 4.72240 4.80328 4.89000 5.00561 5.06493 5.27164 5.40663 5.49226 5.54140 5.88770 5.97719 6.05580 6.14432 6.58754 6.59903 6.74221 6.82470 6.88119 6.98726 7.05773 7.07616 7.10339 7.48305 7.61001 7.64208 7.74669 8.17575 8.52723 9.00735 9.55893 11.08210 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.002731 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.477681 B =10251.932906 C =10478.735258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.038 4.038 11 C -0.105 4.105 12 C -0.142 4.142 13 C 0.110 3.890 14 N -0.669 5.669 15 C 0.508 3.492 16 O -0.495 6.495 17 C 0.045 3.955 18 O -0.345 6.345 19 C 0.062 3.938 20 C 0.063 3.937 21 N -0.842 5.842 22 C -0.117 4.117 23 C -0.104 4.104 24 H 0.264 0.736 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.406 0.594 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.338 0.662 37 H 0.342 0.658 38 H 0.125 0.875 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.213 -22.526 -0.678 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.039 4.039 11 C -0.124 4.124 12 C -0.163 4.163 13 C 0.018 3.982 14 N -0.316 5.316 15 C 0.293 3.707 16 O -0.367 6.367 17 C -0.035 4.035 18 O -0.263 6.263 19 C -0.016 4.016 20 C -0.067 4.067 21 N -0.372 5.372 22 C -0.137 4.137 23 C -0.123 4.123 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.240 0.760 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.938 -21.119 -1.406 26.496 hybrid contribution 0.506 -0.685 0.512 0.994 sum 16.444 -21.804 -0.894 27.324 Atomic orbital electron populations 1.69905 1.06251 1.26930 1.50854 1.25005 0.94749 0.99041 0.94538 0.86802 0.80394 0.83630 0.78677 1.20154 1.21306 1.18896 1.20940 0.88280 0.94633 1.51071 0.90814 1.18808 0.97407 0.88701 0.97404 1.20300 0.93341 0.98105 0.92135 1.20853 0.99521 0.93610 0.98420 1.20722 1.04565 0.95430 0.95539 1.17494 1.01959 0.84279 0.94443 1.43264 1.48104 1.11667 1.28569 1.20303 0.78662 0.89955 0.81762 1.90778 1.51992 1.55185 1.38763 1.22151 0.95450 0.94194 0.91711 1.88157 1.64789 1.26894 1.46429 1.22614 0.96967 0.84007 0.97997 1.21787 0.91580 0.95214 0.98164 1.58543 1.09361 1.61173 1.08143 1.20998 1.00157 0.95654 0.96846 1.20974 0.98948 0.93953 0.98416 0.92647 0.95788 0.95381 0.85887 0.86616 0.75965 0.90400 0.90255 0.93330 0.92652 0.94020 0.89827 0.84935 0.84484 0.85697 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.64 27.46 -169.99 -4.67 16.97 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.24 6.55 56.52 0.37 -5.87 16 7 C -0.51 -14.63 9.65 -34.44 -0.33 -14.96 16 8 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 9 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 10 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 11 C -0.11 -2.01 9.69 -39.61 -0.38 -2.39 16 12 C -0.14 -2.30 9.96 -39.39 -0.39 -2.69 16 13 C 0.11 1.83 6.28 -83.70 -0.53 1.30 16 14 N -0.67 -8.32 5.34 -9.86 -0.05 -8.37 16 15 C 0.51 6.94 7.65 -10.98 -0.08 6.85 16 16 O -0.49 -9.29 14.18 -14.36 -0.20 -9.49 16 17 C 0.05 0.42 6.42 36.00 0.23 0.65 16 18 O -0.35 -4.04 9.82 -55.14 -0.54 -4.58 16 19 C 0.06 0.45 6.22 37.16 0.23 0.68 16 20 C 0.06 0.44 7.17 -3.83 -0.03 0.42 16 21 N -0.84 -6.59 9.57 -10.37 -0.10 -6.69 16 22 C -0.12 -2.20 8.66 -39.39 -0.34 -2.54 16 23 C -0.10 -2.14 9.69 -39.61 -0.38 -2.52 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 26 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.41 3.31 8.82 -40.82 -0.36 2.95 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.34 2.10 8.99 -39.29 -0.35 1.74 16 37 H 0.34 2.05 9.08 -39.30 -0.36 1.69 16 38 H 0.13 2.37 6.41 -52.49 -0.34 2.03 16 39 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -36.49 334.47 -8.07 -44.55 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.56 Total: 4.01 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.76 Total: -14.47 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.62 Total: -42.04 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.75 Total: -14.07 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.49 -8.07 -44.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522758406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.199 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds