Wall clock time and date at job start Tue Mar 31 2020 00:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48505 * 109.47086 * 269.99859 * 3 2 1 5 5 H 1.48501 * 109.47435 * 30.00108 * 3 2 1 6 6 H 1.48504 * 109.46864 * 149.99861 * 3 2 1 7 7 C 1.37873 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99965 * 179.72615 * 7 2 1 10 10 C 1.50697 * 109.47137 * 180.27849 * 9 7 2 11 11 C 1.38286 * 119.92698 * 269.72586 * 10 9 7 12 12 C 1.38122 * 120.06639 * 179.76605 * 11 10 9 13 13 C 1.38862 * 119.92875 * 0.50570 * 12 11 10 14 14 N 1.39929 * 120.07099 * 179.72592 * 13 12 11 15 15 C 1.34780 * 120.00330 * 213.31493 * 14 13 12 16 16 O 1.21284 * 119.99434 * 5.26765 * 15 14 13 17 17 C 1.50698 * 120.00120 * 185.27166 * 15 14 13 18 18 O 1.42898 * 109.46797 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99890 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47271 * 179.97438 * 19 18 17 21 21 N 1.46899 * 109.47141 * 65.00015 * 20 19 18 22 22 C 1.38871 * 119.86473 * 359.74908 * 13 12 11 23 23 C 1.38112 * 119.92493 * 359.97438 * 22 13 12 24 24 H 0.97005 * 119.99813 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.27603 * 9 7 2 26 26 H 1.08997 * 109.47358 * 60.27581 * 9 7 2 27 27 H 1.07996 * 119.96599 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03084 * 180.25302 * 12 11 10 29 29 H 0.97001 * 119.99846 * 33.30353 * 14 13 12 30 30 H 1.09003 * 109.47024 * 299.99539 * 17 15 14 31 31 H 1.08999 * 109.46753 * 59.99787 * 17 15 14 32 32 H 1.09001 * 109.47186 * 300.00440 * 19 18 17 33 33 H 1.09006 * 109.46984 * 59.99742 * 19 18 17 34 34 H 1.09000 * 109.47223 * 185.00182 * 20 19 18 35 35 H 1.08998 * 109.47387 * 305.00110 * 20 19 18 36 36 H 1.00905 * 110.99855 * 56.04145 * 21 20 19 37 37 H 1.00893 * 111.00520 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.04284 * 179.97438 * 22 13 12 39 39 H 1.08005 * 119.96508 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0057 10 6 4.0138 -2.6147 -0.0107 11 6 4.2542 -3.2657 1.1855 12 6 4.7100 -4.5695 1.1844 13 6 4.9369 -5.2231 -0.0196 14 7 5.4042 -6.5420 -0.0243 15 6 6.2291 -6.9614 -1.0042 16 8 6.6427 -6.1726 -1.8275 17 6 6.6374 -8.4102 -1.0769 18 8 7.5074 -8.6043 -2.1938 19 6 7.9559 -9.9517 -2.3539 20 6 8.8752 -10.0417 -3.5736 21 7 10.0908 -9.2539 -3.3297 22 6 4.6997 -4.5649 -1.2192 23 6 4.2384 -3.2630 -1.2113 24 1 -0.4850 0.8401 -0.0004 25 1 3.8712 -0.6784 -0.8961 26 1 3.8785 -0.6819 0.8837 27 1 4.0813 -2.7555 2.1215 28 1 4.8936 -5.0788 2.1190 29 1 5.1345 -7.1546 0.6779 30 1 7.1560 -8.6880 -0.1593 31 1 5.7501 -9.0321 -1.1955 32 1 8.5023 -10.2610 -1.4629 33 1 7.0961 -10.6061 -2.4983 34 1 9.1460 -11.0830 -3.7484 35 1 8.3573 -9.6492 -4.4487 36 1 10.5549 -9.5568 -2.4865 37 1 10.7150 -9.2977 -4.1212 38 1 4.8756 -5.0703 -2.1573 39 1 4.0541 -2.7504 -2.1438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522758406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:18 Heat of formation + Delta-G solvation = -81.757650 kcal Electronic energy + Delta-G solvation = -20352.403966 eV Core-core repulsion = 17065.814435 eV Total energy + Delta-G solvation = -3286.589530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51882 -39.76903 -38.65668 -36.28223 -35.35556 -34.92835 -32.71559 -31.79481 -30.24694 -28.81975 -27.50641 -24.69476 -23.86139 -22.92119 -22.20682 -21.30963 -18.96769 -18.90228 -18.28923 -17.54389 -17.35491 -16.89605 -16.62997 -15.99763 -15.94750 -15.77742 -15.22330 -14.89549 -14.80544 -14.37945 -14.31984 -14.05113 -13.83732 -13.60841 -13.49927 -13.25648 -12.75869 -12.50431 -12.25116 -12.00274 -11.82436 -11.80690 -11.60266 -11.11858 -10.78599 -10.76111 -10.62702 -9.77774 -9.52985 -8.84605 -8.28832 -6.33501 0.40712 0.55675 1.37942 1.38547 1.51071 1.58361 1.75214 2.36302 2.96745 3.00255 3.05327 3.66145 3.70361 4.04591 4.12992 4.14120 4.23604 4.27783 4.30818 4.34669 4.55091 4.58866 4.62309 4.63109 4.72005 4.98116 5.04449 5.07415 5.26413 5.38776 5.42149 5.56108 5.61833 5.99689 6.07135 6.16380 6.29810 6.33317 6.51750 6.62404 6.72334 7.17173 7.29713 8.87478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.002731 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.477681 B =10251.932906 C =10478.735258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.074 4.074 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.121 3.879 14 N -0.653 5.653 15 C 0.503 3.497 16 O -0.554 6.554 17 C 0.052 3.948 18 O -0.388 6.388 19 C 0.057 3.943 20 C 0.059 3.941 21 N -0.864 5.864 22 C -0.130 4.130 23 C -0.120 4.120 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.133 0.867 28 H 0.163 0.837 29 H 0.430 0.570 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.346 0.654 37 H 0.349 0.651 38 H 0.118 0.882 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.081 -24.447 0.986 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.168 1.168 7 C -0.555 4.555 8 H 0.048 0.952 9 C -0.017 4.017 10 C -0.075 4.075 11 C -0.131 4.131 12 C -0.148 4.148 13 C 0.028 3.972 14 N -0.301 5.301 15 C 0.291 3.709 16 O -0.430 6.430 17 C -0.028 4.028 18 O -0.307 6.307 19 C -0.020 4.020 20 C -0.071 4.071 21 N -0.396 5.396 22 C -0.150 4.150 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.151 0.849 28 H 0.180 0.820 29 H 0.270 0.730 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.136 0.864 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.813 -23.106 0.293 29.177 hybrid contribution -0.072 -0.282 -0.025 0.292 sum 17.742 -23.388 0.268 29.357 Atomic orbital electron populations 1.70057 1.08215 1.28218 1.52398 1.25974 0.95633 1.03329 0.94055 0.85664 0.79605 0.78246 0.79206 1.19416 1.20628 1.16823 1.21154 0.90713 0.93034 1.50612 0.95230 1.18651 0.94401 0.91093 0.97510 1.20181 0.96254 0.97324 0.93706 1.21064 0.99314 0.94961 0.97718 1.21074 1.02372 0.94220 0.97158 1.17615 0.99986 0.85937 0.93703 1.43178 1.47359 1.10361 1.29249 1.21300 0.77466 0.91671 0.80446 1.90762 1.54212 1.57132 1.40893 1.22270 0.97037 0.90711 0.92748 1.88105 1.65552 1.29511 1.47575 1.22851 0.97928 0.82470 0.98730 1.21856 0.91195 0.96468 0.97599 1.58554 1.10038 1.62059 1.08986 1.21007 1.00806 0.95252 0.97912 1.20960 1.00034 0.94952 0.97953 0.92374 0.95786 0.94600 0.84892 0.81967 0.72992 0.86717 0.86887 0.91428 0.90551 0.91272 0.91798 0.84051 0.83806 0.86366 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 44.85 27.46 68.60 1.88 46.73 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -10.70 6.55 99.48 0.65 -10.05 16 7 C -0.52 -30.61 9.65 25.60 0.25 -30.36 16 8 H 0.03 1.95 7.98 -2.91 -0.02 1.92 16 9 C 0.02 1.02 4.17 29.10 0.12 1.14 16 10 C -0.07 -3.26 5.07 -19.84 -0.10 -3.36 16 11 C -0.11 -4.14 9.69 22.25 0.22 -3.92 16 12 C -0.13 -3.79 9.96 22.39 0.22 -3.56 16 13 C 0.12 3.79 6.28 38.15 0.24 4.03 16 14 N -0.65 -14.22 5.34 -303.51 -1.62 -15.84 16 15 C 0.50 12.69 7.65 87.66 0.67 13.36 16 16 O -0.55 -20.72 14.18 15.99 0.23 -20.50 16 17 C 0.05 0.76 6.42 71.24 0.46 1.22 16 18 O -0.39 -8.28 9.82 -129.94 -1.28 -9.56 16 19 C 0.06 0.67 6.22 71.98 0.45 1.11 16 20 C 0.06 0.74 7.17 86.30 0.62 1.36 16 21 N -0.86 -12.63 9.57 -186.73 -1.79 -14.42 16 22 C -0.13 -4.95 8.66 22.39 0.19 -4.76 16 23 C -0.12 -5.12 9.69 22.25 0.22 -4.90 16 24 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 25 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 26 H 0.04 1.69 7.15 -2.39 -0.02 1.67 16 27 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.43 5.04 8.82 -92.71 -0.82 4.22 16 30 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.35 3.79 8.99 -89.69 -0.81 2.98 16 37 H 0.35 3.96 9.08 -89.70 -0.81 3.15 16 38 H 0.12 4.64 6.41 -2.91 -0.02 4.62 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -83.89 334.47 0.33 -83.56 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -1.41 Total: 17.65 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 4.01 Total: -27.77 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -3.11 Total: -90.11 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.05 Total: -30.05 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -83.89 0.33 -83.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522758406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.802 kcal (2) G-P(sol) polarization free energy of solvation -83.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds