Wall clock time and date at job start Tue Mar 31 2020 00:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46967 * 354.88889 * 3 2 1 5 5 N 1.46503 * 109.46797 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00017 * 269.99706 * 5 4 3 7 7 C 1.50700 * 109.47272 * 270.00455 * 6 5 4 8 8 H 1.07998 * 119.99922 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99470 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47287 * 119.99821 * 11 9 7 14 14 H 1.48494 * 109.47268 * 239.99648 * 11 9 7 15 15 C 1.34780 * 119.99710 * 90.00484 * 5 4 3 16 16 O 1.21624 * 119.99574 * 180.02562 * 15 5 4 17 17 C 1.47094 * 120.00420 * 359.97438 * 15 5 4 18 18 C 1.32993 * 120.00049 * 180.02562 * 17 15 5 19 19 C 1.50706 * 119.99953 * 180.02562 * 18 17 15 20 20 H 1.09003 * 110.45418 * 2.60040 * 19 18 17 21 21 C 1.54505 * 110.50853 * 240.00189 * 19 18 17 22 22 C 1.54487 * 104.06179 * 241.21637 * 21 19 18 23 23 O 1.44421 * 104.79872 * 336.02098 * 22 21 19 24 24 C 1.44425 * 105.27967 * 40.51065 * 23 22 21 25 25 H 1.08997 * 109.46491 * 234.89067 * 3 2 1 26 26 H 1.08997 * 109.47057 * 114.89057 * 3 2 1 27 27 H 1.09000 * 109.47328 * 59.99951 * 4 3 2 28 28 H 1.08997 * 109.47369 * 299.99977 * 4 3 2 29 29 H 1.08999 * 109.46819 * 30.00513 * 6 5 4 30 30 H 1.08996 * 109.46899 * 150.00104 * 6 5 4 31 31 H 0.97003 * 119.99211 * 179.97438 * 10 9 7 32 32 H 1.08004 * 119.99657 * 0.02562 * 17 15 5 33 33 H 1.07991 * 120.00500 * 359.97438 * 18 17 15 34 34 H 1.09003 * 110.51737 * 122.57556 * 21 19 18 35 35 H 1.09000 * 110.51297 * 359.85985 * 21 19 18 36 36 H 1.08997 * 110.37332 * 94.85398 * 22 21 19 37 37 H 1.09004 * 110.37288 * 217.19057 * 22 21 19 38 38 H 1.08999 * 110.37470 * 200.65665 * 24 23 22 39 39 H 1.09004 * 110.36954 * 78.31941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4359 0.1285 5 7 4.5837 -1.4351 0.1291 6 6 5.3168 -1.5477 -1.1343 7 6 5.5687 -3.0014 -1.4411 8 1 5.2183 -3.7651 -0.7627 9 6 6.2476 -3.3564 -2.5874 10 7 6.6749 -2.4263 -3.4133 11 14 6.5606 -5.1583 -2.9675 12 1 5.9835 -5.9993 -1.8882 13 1 5.9242 -5.5089 -4.2626 14 1 8.0233 -5.3993 -3.0535 15 6 5.2570 -1.3311 1.2920 16 8 6.4732 -1.3300 1.2925 17 6 4.5210 -1.2177 2.5605 18 6 5.1854 -1.1145 3.7080 19 6 4.4313 -0.9989 5.0076 20 1 3.3574 -1.0621 4.8318 21 6 4.7858 0.3237 5.7234 22 6 5.4098 -0.1295 7.0619 23 8 4.8728 -1.4504 7.2909 24 6 4.8830 -2.0947 5.9983 25 1 2.9710 0.5919 0.8407 26 1 2.9712 0.4333 -0.9322 27 1 2.7556 -2.0271 -0.7121 28 1 2.7555 -1.8686 1.0607 29 1 4.7278 -1.1037 -1.9368 30 1 6.2689 -1.0238 -1.0497 31 1 7.1528 -2.6761 -4.2196 32 1 3.4409 -1.2182 2.5600 33 1 6.2653 -1.1143 3.7085 34 1 3.8872 0.9144 5.9016 35 1 5.5083 0.8928 5.1384 36 1 6.4959 -0.1704 6.9797 37 1 5.1145 0.5448 7.8659 38 1 4.1830 -2.9301 5.9851 39 1 5.8884 -2.4370 5.7529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543482137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:19 Heat of formation + Delta-G solvation = -42.095173 kcal Electronic energy + Delta-G solvation = -20965.013421 eV Core-core repulsion = 17680.143784 eV Total energy + Delta-G solvation = -3284.869636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76369 -39.13913 -36.88312 -35.33615 -34.50422 -32.89315 -30.99090 -30.82316 -29.12986 -27.32509 -24.23380 -23.89803 -23.01003 -21.81638 -20.07770 -18.44140 -17.65558 -16.89994 -16.62404 -16.45112 -15.76268 -15.65152 -15.23594 -14.71494 -14.38066 -14.31424 -13.78559 -13.61245 -13.13008 -13.04917 -12.55839 -12.46980 -12.32948 -12.05153 -11.97229 -11.71717 -11.66890 -11.51789 -11.29192 -10.98032 -10.93925 -10.82637 -10.63724 -10.21302 -10.05020 -9.71682 -9.26637 -9.11187 -8.49190 -7.85405 -6.10592 -4.15169 1.56222 2.73231 2.80310 3.27021 3.35134 3.38313 3.62093 3.75116 3.81093 4.19008 4.39818 4.42627 4.53374 4.69521 4.85282 4.94776 5.03694 5.08312 5.16132 5.22039 5.24647 5.40686 5.44821 5.46620 5.50723 5.59553 5.70682 5.81201 5.82784 6.07631 6.36776 6.46777 6.54586 6.96635 7.33881 7.41620 7.56418 7.85842 8.15388 8.24667 8.81838 8.96812 9.50530 10.97558 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.004469 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.751515 B = 6263.325804 C = 7703.190922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.244 3.756 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.536 3.464 16 O -0.537 6.537 17 C -0.199 4.199 18 C -0.080 4.080 19 C -0.098 4.098 20 H 0.091 0.909 21 C -0.147 4.147 22 C 0.043 3.957 23 O -0.377 6.377 24 C 0.052 3.948 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 5.751 15.328 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.125 3.875 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.324 3.676 16 O -0.416 6.416 17 C -0.219 4.219 18 C -0.099 4.099 19 C -0.117 4.117 20 H 0.109 0.891 21 C -0.185 4.185 22 C -0.034 4.034 23 O -0.296 6.296 24 C -0.025 4.025 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.317 5.680 15.310 17.509 hybrid contribution 0.608 -0.876 -0.693 1.272 sum -5.709 4.804 14.616 16.410 Atomic orbital electron populations 1.81209 1.13051 1.08690 1.09412 1.29129 0.95117 0.93060 0.92765 1.19920 0.81276 1.01520 1.06495 1.21328 0.82206 0.93295 1.04047 1.48118 1.04871 1.70441 1.08744 1.19369 0.92629 0.97543 0.77989 1.21458 1.36625 0.92158 1.06456 0.92295 1.24920 0.95292 0.97758 0.96033 1.69935 1.38273 1.32499 1.12543 0.86455 0.78110 0.84860 0.78085 1.19783 1.20963 1.20877 1.18398 0.87437 0.77701 0.84017 1.90776 1.13583 1.50254 1.86939 1.23005 1.00252 1.05214 0.93478 1.23488 1.00717 0.93509 0.92230 1.21761 1.00707 0.95574 0.93627 0.89108 1.22999 1.02149 0.97180 0.96165 1.23458 0.98074 0.84664 0.97159 1.89121 1.84705 1.26924 1.28866 1.23490 1.01823 0.95412 0.81764 0.87458 0.86525 0.88797 0.90466 0.94670 0.93512 0.92718 0.85872 0.85321 0.90289 0.89764 0.92023 0.89099 0.88672 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.51 18.54 42.15 0.78 -5.73 16 2 C 0.22 2.60 15.43 -20.76 -0.32 2.28 16 3 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.56 5.08 -4.04 -0.02 1.54 16 5 N -0.59 -10.83 2.46 -176.46 -0.43 -11.26 16 6 C 0.24 5.76 5.16 -5.19 -0.03 5.73 16 7 C -0.53 -14.10 9.39 -34.44 -0.32 -14.42 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 11 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.54 9.90 7.62 -12.67 -0.10 9.81 16 16 O -0.54 -12.44 15.80 5.26 0.08 -12.35 16 17 C -0.20 -2.59 8.83 -37.81 -0.33 -2.92 16 18 C -0.08 -0.93 8.10 -36.12 -0.29 -1.23 16 19 C -0.10 -0.90 3.44 -90.21 -0.31 -1.21 16 20 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 21 C -0.15 -1.18 6.73 -25.16 -0.17 -1.35 16 22 C 0.04 0.36 7.63 37.94 0.29 0.65 16 23 O -0.38 -4.11 11.65 -35.23 -0.41 -4.52 16 24 C 0.05 0.50 7.18 37.93 0.27 0.77 16 25 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.08 0.86 6.09 -51.93 -0.32 0.54 16 29 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.12 1.25 6.06 -52.48 -0.32 0.93 16 33 H 0.13 1.71 7.49 -52.49 -0.39 1.31 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -33.06 340.31 -6.29 -39.35 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.55 Total: -2.63 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.61 Total: 0.55 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 1.08 Total: -41.68 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.33 Total: -16.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.06 -6.29 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543482137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.741 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds