Wall clock time and date at job start Tue Mar 31 2020 00:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46967 * 354.88889 * 3 2 1 5 5 N 1.46503 * 109.46797 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00017 * 269.99706 * 5 4 3 7 7 C 1.50700 * 109.47272 * 270.00455 * 6 5 4 8 8 H 1.07998 * 119.99922 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99470 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47287 * 119.99821 * 11 9 7 14 14 H 1.48494 * 109.47268 * 239.99648 * 11 9 7 15 15 C 1.34780 * 119.99710 * 90.00484 * 5 4 3 16 16 O 1.21624 * 119.99574 * 180.02562 * 15 5 4 17 17 C 1.47094 * 120.00420 * 359.97438 * 15 5 4 18 18 C 1.32993 * 120.00049 * 180.02562 * 17 15 5 19 19 C 1.50706 * 119.99953 * 180.02562 * 18 17 15 20 20 H 1.09003 * 110.45418 * 2.60040 * 19 18 17 21 21 C 1.54505 * 110.50853 * 240.00189 * 19 18 17 22 22 C 1.54487 * 104.06179 * 241.21637 * 21 19 18 23 23 O 1.44421 * 104.79872 * 336.02098 * 22 21 19 24 24 C 1.44425 * 105.27967 * 40.51065 * 23 22 21 25 25 H 1.08997 * 109.46491 * 234.89067 * 3 2 1 26 26 H 1.08997 * 109.47057 * 114.89057 * 3 2 1 27 27 H 1.09000 * 109.47328 * 59.99951 * 4 3 2 28 28 H 1.08997 * 109.47369 * 299.99977 * 4 3 2 29 29 H 1.08999 * 109.46819 * 30.00513 * 6 5 4 30 30 H 1.08996 * 109.46899 * 150.00104 * 6 5 4 31 31 H 0.97003 * 119.99211 * 179.97438 * 10 9 7 32 32 H 1.08004 * 119.99657 * 0.02562 * 17 15 5 33 33 H 1.07991 * 120.00500 * 359.97438 * 18 17 15 34 34 H 1.09003 * 110.51737 * 122.57556 * 21 19 18 35 35 H 1.09000 * 110.51297 * 359.85985 * 21 19 18 36 36 H 1.08997 * 110.37332 * 94.85398 * 22 21 19 37 37 H 1.09004 * 110.37288 * 217.19057 * 22 21 19 38 38 H 1.08999 * 110.37470 * 200.65665 * 24 23 22 39 39 H 1.09004 * 110.36954 * 78.31941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4359 0.1285 5 7 4.5837 -1.4351 0.1291 6 6 5.3168 -1.5477 -1.1343 7 6 5.5687 -3.0014 -1.4411 8 1 5.2183 -3.7651 -0.7627 9 6 6.2476 -3.3564 -2.5874 10 7 6.6749 -2.4263 -3.4133 11 14 6.5606 -5.1583 -2.9675 12 1 5.9835 -5.9993 -1.8882 13 1 5.9242 -5.5089 -4.2626 14 1 8.0233 -5.3993 -3.0535 15 6 5.2570 -1.3311 1.2920 16 8 6.4732 -1.3300 1.2925 17 6 4.5210 -1.2177 2.5605 18 6 5.1854 -1.1145 3.7080 19 6 4.4313 -0.9989 5.0076 20 1 3.3574 -1.0621 4.8318 21 6 4.7858 0.3237 5.7234 22 6 5.4098 -0.1295 7.0619 23 8 4.8728 -1.4504 7.2909 24 6 4.8830 -2.0947 5.9983 25 1 2.9710 0.5919 0.8407 26 1 2.9712 0.4333 -0.9322 27 1 2.7556 -2.0271 -0.7121 28 1 2.7555 -1.8686 1.0607 29 1 4.7278 -1.1037 -1.9368 30 1 6.2689 -1.0238 -1.0497 31 1 7.1528 -2.6761 -4.2196 32 1 3.4409 -1.2182 2.5600 33 1 6.2653 -1.1143 3.7085 34 1 3.8872 0.9144 5.9016 35 1 5.5083 0.8928 5.1384 36 1 6.4959 -0.1704 6.9797 37 1 5.1145 0.5448 7.8659 38 1 4.1830 -2.9301 5.9851 39 1 5.8884 -2.4370 5.7529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543482137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:18 Heat of formation + Delta-G solvation = -63.173241 kcal Electronic energy + Delta-G solvation = -20965.927434 eV Core-core repulsion = 17680.143784 eV Total energy + Delta-G solvation = -3285.783650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84474 -40.22353 -37.99543 -36.72374 -35.50908 -34.80256 -32.20067 -31.79613 -30.02078 -28.98050 -25.60627 -25.29771 -23.84471 -22.94149 -21.01276 -19.69498 -18.83011 -18.35433 -18.07389 -17.47510 -16.95795 -16.55242 -16.33580 -15.98362 -15.76007 -15.62474 -14.85402 -14.70651 -14.39445 -14.25900 -13.79748 -13.67657 -13.53594 -13.24936 -12.97926 -12.89837 -12.80989 -12.67061 -12.52443 -12.49488 -12.20900 -12.17509 -11.86479 -11.65007 -11.57833 -10.78108 -10.61158 -10.59353 -10.29137 -9.44841 -8.18291 -6.30754 0.47305 1.39285 1.41871 1.52454 1.73514 1.85103 2.27285 2.45258 2.52370 3.02413 3.12495 3.18473 3.66527 3.74641 3.91408 4.00243 4.14697 4.15648 4.22778 4.30491 4.38933 4.48776 4.59185 4.79418 4.84905 4.88567 4.90450 5.04800 5.07217 5.10242 5.13885 5.31767 5.49624 5.51197 5.62656 5.84865 5.89762 6.12739 6.61361 6.75813 6.82140 7.33963 7.51866 8.88547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.004469 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.751515 B = 6263.325804 C = 7703.190922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.247 3.753 3 C -0.037 4.037 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.258 3.742 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.959 3.041 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.284 1.284 15 C 0.528 3.472 16 O -0.598 6.598 17 C -0.204 4.204 18 C -0.055 4.055 19 C -0.092 4.092 20 H 0.112 0.888 21 C -0.144 4.144 22 C 0.037 3.963 23 O -0.397 6.397 24 C 0.048 3.952 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.036 0.964 30 H 0.004 0.996 31 H 0.266 0.734 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 5.677 16.842 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.078 4.078 4 C -0.011 4.011 5 N -0.322 5.322 6 C 0.137 3.863 7 C -0.579 4.579 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.784 3.216 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.211 1.211 15 C 0.320 3.680 16 O -0.481 6.481 17 C -0.225 4.225 18 C -0.076 4.076 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.181 4.181 22 C -0.039 4.039 23 O -0.316 6.316 24 C -0.029 4.029 25 H 0.154 0.846 26 H 0.137 0.863 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.180 0.820 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.039 5.612 16.836 19.483 hybrid contribution 1.195 -0.824 -1.099 1.821 sum -6.843 4.787 15.737 17.816 Atomic orbital electron populations 1.81255 1.14344 1.10024 1.11035 1.29127 0.94892 0.91727 0.91327 1.19829 0.80110 0.99905 1.07966 1.21554 0.78929 0.95301 1.05345 1.47991 1.06867 1.70240 1.07082 1.18827 0.91502 0.95469 0.80528 1.21782 1.36367 0.93495 1.06263 0.92884 1.25731 0.95187 1.01805 0.96086 1.70036 1.39088 1.34406 1.13048 0.85494 0.77725 0.80072 0.78290 1.19243 1.19795 1.21051 1.19283 0.87040 0.76160 0.85513 1.90744 1.16432 1.53080 1.87864 1.22828 1.01566 1.07489 0.90584 1.23595 0.99962 0.90679 0.93315 1.21778 1.01361 0.96147 0.91769 0.87013 1.23011 1.02917 0.96602 0.95603 1.23634 0.98189 0.84029 0.98068 1.89107 1.84927 1.28093 1.29461 1.23552 1.01815 0.95893 0.81615 0.84552 0.86334 0.89858 0.87355 0.94651 0.97825 0.92555 0.81958 0.87495 0.88531 0.89816 0.92051 0.87401 0.87586 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.28 18.54 20.01 0.37 -12.91 16 2 C 0.25 5.25 15.43 89.44 1.38 6.63 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.76 5.08 86.38 0.44 3.20 16 5 N -0.59 -21.50 2.46 -830.43 -2.04 -23.54 16 6 C 0.26 12.54 5.16 85.63 0.44 12.99 16 7 C -0.54 -29.35 9.39 25.60 0.24 -29.11 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -53.73 13.29 21.45 0.28 -53.45 16 11 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 C 0.53 19.42 7.62 86.57 0.66 20.08 16 16 O -0.60 -28.74 15.80 -4.11 -0.06 -28.81 16 17 C -0.20 -4.83 8.83 23.43 0.21 -4.63 16 18 C -0.06 -1.19 8.10 24.52 0.20 -1.00 16 19 C -0.09 -1.40 3.44 -10.53 -0.04 -1.44 16 20 H 0.11 1.33 7.87 -2.39 -0.02 1.31 16 21 C -0.14 -1.87 6.73 31.61 0.21 -1.66 16 22 C 0.04 0.53 7.63 72.49 0.55 1.09 16 23 O -0.40 -7.83 11.65 -148.98 -1.74 -9.56 16 24 C 0.05 0.82 7.18 72.48 0.52 1.34 16 25 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 28 H 0.11 1.99 6.09 -2.39 -0.01 1.98 16 29 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 30 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 31 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.16 2.51 6.06 -2.91 -0.02 2.49 16 33 H 0.11 2.83 7.49 -2.92 -0.02 2.80 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.12 7.73 -2.39 -0.02 1.10 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 Total: -1.00 -74.52 340.31 5.34 -69.18 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.04 Total: 5.32 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.45 Total: 8.06 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -1.38 Total: -89.90 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.80 Total: -38.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -74.52 5.34 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543482137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.010 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds