Wall clock time and date at job start Tue Mar 31 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46913 * 183.45241 * 3 2 1 5 5 N 1.46504 * 109.46810 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00381 * 90.00065 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.99655 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 C 1.34781 * 119.99832 * 269.99624 * 5 4 3 16 16 O 1.21609 * 120.00184 * 180.02562 * 15 5 4 17 17 C 1.47103 * 119.99881 * 0.02562 * 15 5 4 18 18 C 1.32994 * 119.99876 * 179.97438 * 17 15 5 19 19 C 1.50703 * 120.00016 * 180.02562 * 18 17 15 20 20 H 1.09001 * 110.45625 * 357.39853 * 19 18 17 21 21 C 1.54509 * 110.51253 * 120.00277 * 19 18 17 22 22 C 1.54477 * 104.06285 * 118.64388 * 21 19 18 23 23 O 1.44421 * 104.80254 * 23.98055 * 22 21 19 24 24 C 1.44422 * 105.27704 * 319.48614 * 23 22 21 25 25 H 1.09000 * 109.47321 * 63.44869 * 3 2 1 26 26 H 1.09004 * 109.47488 * 303.45251 * 3 2 1 27 27 H 1.08992 * 109.47054 * 60.00193 * 4 3 2 28 28 H 1.08994 * 109.47108 * 299.99480 * 4 3 2 29 29 H 1.09002 * 109.47391 * 149.99645 * 6 5 4 30 30 H 1.09001 * 109.46813 * 29.99701 * 6 5 4 31 31 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.00250 * 0.02562 * 17 15 5 33 33 H 1.08002 * 119.99873 * 0.02562 * 18 17 15 34 34 H 1.09002 * 110.50845 * 237.29202 * 21 19 18 35 35 H 1.08999 * 110.51105 * 359.97438 * 21 19 18 36 36 H 1.08997 * 110.37011 * 142.81103 * 22 21 19 37 37 H 1.08994 * 110.37351 * 265.14522 * 22 21 19 38 38 H 1.09007 * 110.37174 * 281.68430 * 24 23 22 39 39 H 1.09002 * 110.37649 * 159.34771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4408 0.0869 5 7 4.5823 1.4415 0.0863 6 6 5.3143 1.5184 -1.1804 7 6 5.5660 0.1265 -1.7005 8 1 5.2153 -0.7297 -1.1434 9 6 6.2430 -0.0537 -2.8880 10 7 6.6695 0.9889 -3.5666 11 14 6.5543 -1.7790 -3.5329 12 1 5.9772 -2.7713 -2.5909 13 1 5.9158 -1.9321 -4.8650 14 1 8.0168 -2.0050 -3.6560 15 6 5.2567 1.3714 1.2511 16 8 6.4728 1.3724 1.2507 17 6 4.5217 1.2937 2.5230 18 6 5.1871 1.2240 3.6723 19 6 4.4342 1.1438 4.9753 20 1 3.3600 1.2001 4.7987 21 6 4.7915 -0.1574 5.7279 22 6 5.4190 0.3344 7.0510 23 8 4.8817 1.6611 7.2434 24 6 4.8880 2.2679 5.9328 25 1 2.9715 -0.4585 -0.9193 26 1 2.9716 -0.5657 0.8574 27 1 2.7537 1.8999 1.0061 28 1 2.7537 2.0071 -0.7706 29 1 6.2665 2.0239 -1.0197 30 1 4.7246 2.0769 -1.9074 31 1 7.1461 0.8620 -4.4018 32 1 3.4417 1.2923 2.5234 33 1 6.2671 1.2249 3.6719 34 1 3.8937 -0.7432 5.9254 35 1 5.5124 -0.7429 5.1574 36 1 5.1263 -0.3166 7.8748 37 1 6.5048 0.3735 6.9646 38 1 5.8925 2.6036 5.6748 39 1 4.1874 3.1023 5.8976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543482145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:22 Heat of formation + Delta-G solvation = -42.219873 kcal Electronic energy + Delta-G solvation = -21076.518108 eV Core-core repulsion = 17791.643065 eV Total energy + Delta-G solvation = -3284.875044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76423 -39.13875 -36.79538 -35.31998 -34.49995 -32.85465 -30.98278 -30.74381 -29.13426 -27.39267 -24.29709 -23.72656 -23.01291 -21.84320 -20.08825 -18.44555 -17.61398 -16.91957 -16.60356 -16.28900 -15.78377 -15.65159 -15.23951 -14.60192 -14.44639 -14.24218 -13.81981 -13.48879 -13.09236 -13.04298 -12.50807 -12.40681 -12.31962 -12.09593 -11.95424 -11.68292 -11.59497 -11.51063 -11.28362 -11.03549 -10.90563 -10.80339 -10.61755 -10.20144 -10.05366 -9.69159 -9.26620 -9.10876 -8.50751 -7.86411 -6.12047 -4.17271 1.56406 2.83541 2.91542 3.25242 3.33756 3.35330 3.63061 3.76423 3.85768 4.24206 4.37678 4.43200 4.54828 4.70251 4.85736 4.96814 5.04455 5.12172 5.21075 5.24058 5.28774 5.42189 5.46205 5.50073 5.56035 5.59361 5.72749 5.82106 5.94896 6.17574 6.37355 6.47055 6.54326 6.98001 7.35164 7.41001 7.67175 7.83591 8.13089 8.24555 8.80180 8.95736 9.48487 10.96115 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.004356 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.930463 B = 6426.681926 C = 7365.453792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.219 3.781 3 C -0.054 4.054 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.243 3.757 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.536 3.464 16 O -0.537 6.537 17 C -0.199 4.199 18 C -0.080 4.080 19 C -0.098 4.098 20 H 0.091 0.909 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.052 3.948 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -0.033 15.771 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.098 4.098 3 C -0.095 4.095 4 C -0.003 4.003 5 N -0.323 5.323 6 C 0.124 3.876 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.325 3.675 16 O -0.415 6.415 17 C -0.220 4.220 18 C -0.100 4.100 19 C -0.117 4.117 20 H 0.109 0.891 21 C -0.186 4.186 22 C -0.033 4.033 23 O -0.296 6.296 24 C -0.024 4.024 25 H 0.148 0.852 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.187 0.133 15.755 16.927 hybrid contribution 0.624 -1.186 -0.859 1.592 sum -5.563 -1.053 14.897 15.936 Atomic orbital electron populations 1.81183 1.13130 1.08928 1.09862 1.29298 0.95244 0.92863 0.92442 1.20016 0.80724 1.01291 1.07468 1.21290 0.82038 0.93830 1.03165 1.48134 1.04924 1.70862 1.08356 1.19391 0.92710 0.97699 0.77794 1.21455 1.36904 0.92368 1.06028 0.92068 1.24926 0.95295 0.97034 0.96692 1.69931 1.38145 1.29290 1.15690 0.86495 0.78186 0.84387 0.78666 1.19705 1.20997 1.20903 1.18384 0.87421 0.77690 0.84013 1.90773 1.13588 1.49944 1.87228 1.23014 1.00260 1.05308 0.93387 1.23494 1.00715 0.93511 0.92243 1.21765 1.00701 0.95607 0.93591 0.89090 1.23002 1.02204 0.97325 0.96032 1.23456 0.98058 0.84311 0.97500 1.89118 1.84740 1.27557 1.28217 1.23486 1.01721 0.95632 0.81608 0.85195 0.87622 0.90694 0.89514 0.93575 0.94705 0.92691 0.85863 0.85325 0.90266 0.89705 0.89083 0.92010 0.91531 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.00 18.54 42.15 0.78 -6.22 16 2 C 0.22 2.88 15.43 -20.76 -0.32 2.56 16 3 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 4 C 0.12 1.63 5.12 -4.04 -0.02 1.61 16 5 N -0.59 -10.80 2.46 -176.46 -0.43 -11.24 16 6 C 0.24 5.70 5.20 -5.19 -0.03 5.68 16 7 C -0.53 -13.48 8.92 -34.44 -0.31 -13.78 16 8 H 0.06 1.51 7.42 -52.49 -0.39 1.12 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 11 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.54 9.88 7.62 -12.66 -0.10 9.79 16 16 O -0.54 -12.39 15.80 5.27 0.08 -12.31 16 17 C -0.20 -2.59 8.83 -37.81 -0.33 -2.93 16 18 C -0.08 -0.94 8.09 -36.13 -0.29 -1.23 16 19 C -0.10 -0.90 3.45 -90.20 -0.31 -1.21 16 20 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 21 C -0.15 -1.23 6.73 -25.16 -0.17 -1.40 16 22 C 0.04 0.37 7.63 37.93 0.29 0.66 16 23 O -0.38 -4.07 11.65 -35.23 -0.41 -4.48 16 24 C 0.05 0.49 7.17 37.93 0.27 0.76 16 25 H 0.13 1.84 7.26 -51.93 -0.38 1.46 16 26 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.78 6.10 -51.93 -0.32 0.47 16 28 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 30 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.12 1.25 6.07 -52.49 -0.32 0.93 16 33 H 0.13 1.70 7.49 -52.49 -0.39 1.31 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.05 338.29 -6.22 -38.27 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.47 Total: -1.56 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.59 Total: 1.25 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.08 Total: -41.82 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.33 Total: -16.79 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.05 -6.22 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543482145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.949 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds