Wall clock time and date at job start Tue Mar 31 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46913 * 183.45241 * 3 2 1 5 5 N 1.46504 * 109.46810 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00381 * 90.00065 * 5 4 3 7 7 C 1.50701 * 109.46992 * 269.99655 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 C 1.34781 * 119.99832 * 269.99624 * 5 4 3 16 16 O 1.21609 * 120.00184 * 180.02562 * 15 5 4 17 17 C 1.47103 * 119.99881 * 0.02562 * 15 5 4 18 18 C 1.32994 * 119.99876 * 179.97438 * 17 15 5 19 19 C 1.50703 * 120.00016 * 180.02562 * 18 17 15 20 20 H 1.09001 * 110.45625 * 357.39853 * 19 18 17 21 21 C 1.54509 * 110.51253 * 120.00277 * 19 18 17 22 22 C 1.54477 * 104.06285 * 118.64388 * 21 19 18 23 23 O 1.44421 * 104.80254 * 23.98055 * 22 21 19 24 24 C 1.44422 * 105.27704 * 319.48614 * 23 22 21 25 25 H 1.09000 * 109.47321 * 63.44869 * 3 2 1 26 26 H 1.09004 * 109.47488 * 303.45251 * 3 2 1 27 27 H 1.08992 * 109.47054 * 60.00193 * 4 3 2 28 28 H 1.08994 * 109.47108 * 299.99480 * 4 3 2 29 29 H 1.09002 * 109.47391 * 149.99645 * 6 5 4 30 30 H 1.09001 * 109.46813 * 29.99701 * 6 5 4 31 31 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.00250 * 0.02562 * 17 15 5 33 33 H 1.08002 * 119.99873 * 0.02562 * 18 17 15 34 34 H 1.09002 * 110.50845 * 237.29202 * 21 19 18 35 35 H 1.08999 * 110.51105 * 359.97438 * 21 19 18 36 36 H 1.08997 * 110.37011 * 142.81103 * 22 21 19 37 37 H 1.08994 * 110.37351 * 265.14522 * 22 21 19 38 38 H 1.09007 * 110.37174 * 281.68430 * 24 23 22 39 39 H 1.09002 * 110.37649 * 159.34771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4408 0.0869 5 7 4.5823 1.4415 0.0863 6 6 5.3143 1.5184 -1.1804 7 6 5.5660 0.1265 -1.7005 8 1 5.2153 -0.7297 -1.1434 9 6 6.2430 -0.0537 -2.8880 10 7 6.6695 0.9889 -3.5666 11 14 6.5543 -1.7790 -3.5329 12 1 5.9772 -2.7713 -2.5909 13 1 5.9158 -1.9321 -4.8650 14 1 8.0168 -2.0050 -3.6560 15 6 5.2567 1.3714 1.2511 16 8 6.4728 1.3724 1.2507 17 6 4.5217 1.2937 2.5230 18 6 5.1871 1.2240 3.6723 19 6 4.4342 1.1438 4.9753 20 1 3.3600 1.2001 4.7987 21 6 4.7915 -0.1574 5.7279 22 6 5.4190 0.3344 7.0510 23 8 4.8817 1.6611 7.2434 24 6 4.8880 2.2679 5.9328 25 1 2.9715 -0.4585 -0.9193 26 1 2.9716 -0.5657 0.8574 27 1 2.7537 1.8999 1.0061 28 1 2.7537 2.0071 -0.7706 29 1 6.2665 2.0239 -1.0197 30 1 4.7246 2.0769 -1.9074 31 1 7.1461 0.8620 -4.4018 32 1 3.4417 1.2923 2.5234 33 1 6.2671 1.2249 3.6719 34 1 3.8937 -0.7432 5.9254 35 1 5.5124 -0.7429 5.1574 36 1 5.1263 -0.3166 7.8748 37 1 6.5048 0.3735 6.9646 38 1 5.8925 2.6036 5.6748 39 1 4.1874 3.1023 5.8976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543482145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:22 Heat of formation + Delta-G solvation = -62.356749 kcal Electronic energy + Delta-G solvation = -21077.391309 eV Core-core repulsion = 17791.643065 eV Total energy + Delta-G solvation = -3285.748244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84655 -40.22203 -37.98626 -36.72346 -35.49988 -34.73773 -32.15423 -31.79140 -30.03259 -29.02635 -25.63635 -25.16080 -23.85190 -22.96326 -21.01611 -19.68330 -18.98060 -18.26592 -17.87614 -17.48635 -16.95474 -16.55115 -16.32473 -15.96252 -15.81809 -15.55829 -14.81604 -14.71098 -14.38922 -14.15894 -13.79793 -13.74057 -13.52501 -13.23221 -13.03327 -12.81967 -12.75868 -12.69751 -12.53117 -12.50373 -12.20942 -12.14541 -11.79035 -11.58001 -11.55164 -10.77680 -10.60714 -10.56290 -10.28639 -9.45331 -8.14546 -6.26674 0.47693 1.42818 1.45661 1.55591 1.75432 1.85973 2.28833 2.47102 2.53145 3.03218 3.17265 3.18694 3.66419 3.74662 3.92620 4.01041 4.15440 4.20903 4.22529 4.30959 4.38987 4.48268 4.59907 4.80100 4.87685 4.88775 4.91308 5.04516 5.08344 5.12490 5.16944 5.33155 5.50232 5.51678 5.66985 5.85194 5.90891 6.14284 6.62056 6.77412 6.85235 7.37090 7.53179 8.93114 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.004356 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.930463 B = 6426.681926 C = 7365.453792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.248 3.752 3 C -0.042 4.042 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.256 3.744 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.958 3.042 12 H -0.259 1.259 13 H -0.277 1.277 14 H -0.289 1.289 15 C 0.529 3.471 16 O -0.598 6.598 17 C -0.204 4.204 18 C -0.056 4.056 19 C -0.092 4.092 20 H 0.112 0.888 21 C -0.146 4.146 22 C 0.038 3.962 23 O -0.396 6.396 24 C 0.049 3.951 25 H 0.114 0.886 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.087 0.913 29 H -0.002 1.002 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.164 0.836 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -1.290 17.470 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.069 4.069 3 C -0.083 4.083 4 C -0.006 4.006 5 N -0.323 5.323 6 C 0.135 3.865 7 C -0.568 4.568 8 H 0.087 0.913 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.783 3.217 12 H -0.183 1.183 13 H -0.203 1.203 14 H -0.216 1.216 15 C 0.321 3.679 16 O -0.481 6.481 17 C -0.225 4.225 18 C -0.076 4.076 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.184 4.184 22 C -0.038 4.038 23 O -0.315 6.315 24 C -0.028 4.028 25 H 0.132 0.868 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.016 0.984 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.151 -1.132 17.473 19.314 hybrid contribution 1.274 -0.746 -1.311 1.975 sum -6.877 -1.877 16.162 17.665 Atomic orbital electron populations 1.81231 1.14158 1.10109 1.11155 1.29150 0.94844 0.91700 0.91234 1.19883 0.80038 1.00671 1.07712 1.21577 0.78769 0.94909 1.05391 1.48012 1.06922 1.70660 1.06661 1.18856 0.91233 0.96335 0.80055 1.21803 1.35956 0.93340 1.05744 0.91309 1.25771 0.95362 1.00615 0.97295 1.70058 1.39398 1.31441 1.16237 0.85509 0.77513 0.80223 0.78448 1.18252 1.20315 1.21594 1.19271 0.87021 0.76108 0.85531 1.90743 1.16444 1.52740 1.88149 1.22837 1.01586 1.07593 0.90453 1.23601 0.99958 0.90672 0.93350 1.21786 1.01393 0.96082 0.91791 0.86956 1.23017 1.02824 0.96910 0.95604 1.23611 0.98157 0.83753 0.98288 1.89105 1.84937 1.28609 1.28898 1.23562 1.01895 0.96062 0.81246 0.86823 0.85310 0.86731 0.89431 0.98358 0.95399 0.92764 0.81916 0.87511 0.88672 0.90076 0.87476 0.92034 0.92165 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.92 18.54 20.00 0.37 -13.55 16 2 C 0.25 5.80 15.43 89.44 1.38 7.18 16 3 C -0.04 -0.91 6.03 28.79 0.17 -0.74 16 4 C 0.12 2.84 5.12 86.38 0.44 3.28 16 5 N -0.59 -21.36 2.46 -830.44 -2.04 -23.40 16 6 C 0.26 12.42 5.20 85.63 0.45 12.86 16 7 C -0.53 -27.27 8.92 25.60 0.23 -27.04 16 8 H 0.07 3.36 7.42 -2.91 -0.02 3.33 16 9 C 0.01 0.45 5.46 84.66 0.46 0.91 16 10 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 11 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 15 C 0.53 19.30 7.62 86.57 0.66 19.96 16 16 O -0.60 -28.59 15.80 -4.06 -0.06 -28.65 16 17 C -0.20 -4.79 8.83 23.43 0.21 -4.58 16 18 C -0.06 -1.19 8.09 24.52 0.20 -0.99 16 19 C -0.09 -1.39 3.45 -10.52 -0.04 -1.43 16 20 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16 21 C -0.15 -2.00 6.73 31.61 0.21 -1.79 16 22 C 0.04 0.56 7.63 72.48 0.55 1.11 16 23 O -0.40 -7.67 11.65 -148.98 -1.74 -9.41 16 24 C 0.05 0.80 7.17 72.49 0.52 1.32 16 25 H 0.11 2.99 7.26 -2.39 -0.02 2.97 16 26 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.11 1.90 6.10 -2.39 -0.01 1.89 16 28 H 0.09 2.13 7.89 -2.39 -0.02 2.11 16 29 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 30 H 0.03 1.37 7.89 -2.39 -0.02 1.36 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.16 2.47 6.07 -2.91 -0.02 2.45 16 33 H 0.11 2.81 7.49 -2.91 -0.02 2.79 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.19 7.73 -2.39 -0.02 1.17 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.04 7.86 -2.38 -0.02 1.02 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.34 338.29 5.34 -67.00 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.05 Total: 7.19 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.45 Total: 10.05 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -1.38 Total: -90.50 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.80 Total: -38.06 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.34 5.34 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543482145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.640 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds