Wall clock time and date at job start Tue Mar 31 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48501 * 109.46910 * 90.00317 * 3 2 1 5 5 H 1.48496 * 109.47127 * 330.00347 * 3 2 1 6 6 H 1.48497 * 109.47130 * 210.00095 * 3 2 1 7 7 C 1.38815 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 19.99633 * 7 2 1 9 9 N 1.36932 * 120.00092 * 199.99281 * 7 2 1 10 10 C 1.47429 * 125.64586 * 20.90869 * 9 7 2 11 11 C 1.54911 * 104.83041 * 155.83350 * 10 9 7 12 12 C 1.55154 * 101.58513 * 37.00548 * 11 10 9 13 13 C 1.47019 * 125.64827 * 200.59549 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51402 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68412 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.50694 * 109.47282 * 180.02562 * 19 17 16 21 21 C 1.41380 * 126.58619 * 89.99228 * 20 19 17 22 22 C 1.34509 * 106.84588 * 179.97438 * 21 20 19 23 23 O 1.34298 * 108.42058 * 0.02562 * 22 21 20 24 24 C 1.34308 * 109.47860 * 359.76426 * 23 22 21 25 25 H 0.96996 * 119.99850 * 174.91044 * 1 2 3 26 26 H 1.08997 * 110.36717 * 274.67060 * 10 9 7 27 27 H 1.08999 * 110.36617 * 36.99141 * 10 9 7 28 28 H 1.08994 * 111.00512 * 155.08656 * 11 10 9 29 29 H 1.09001 * 111.00145 * 278.93019 * 11 10 9 30 30 H 1.09002 * 110.71878 * 82.85908 * 12 11 10 31 31 H 1.08998 * 110.72268 * 205.95687 * 12 11 10 32 32 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 33 33 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 34 34 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 35 35 H 1.09007 * 109.47078 * 299.99755 * 19 17 16 36 36 H 1.08998 * 109.47642 * 59.99794 * 19 17 16 37 37 H 1.08008 * 126.57563 * 359.93311 * 21 20 19 38 38 H 1.08004 * 125.79388 * 179.97438 * 22 21 20 39 39 H 1.07995 * 125.79366 * 180.23649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3189 9 7 3.3178 -1.2378 0.4060 10 6 3.9823 -0.2306 1.2531 11 6 5.1608 -0.9859 1.9167 12 6 5.6184 -1.9214 0.7666 13 6 4.2895 -2.2899 0.0741 14 1 3.9330 -3.2527 0.4403 15 6 4.4945 -2.3497 -1.4410 16 7 3.2138 -2.6262 -2.0965 17 6 3.1246 -2.5964 -3.4409 18 8 4.1047 -2.3411 -4.1081 19 6 1.8071 -2.8802 -4.1152 20 6 1.9767 -2.7846 -5.6095 21 6 2.3307 -3.8356 -6.4864 22 6 2.3688 -3.3134 -7.7254 23 8 2.0590 -2.0091 -7.6459 24 6 1.8155 -1.6838 -6.3657 25 1 -0.4850 -0.8367 -0.0745 26 1 4.3547 0.5922 0.6429 27 1 3.2938 0.1404 2.0123 28 1 5.9564 -0.2970 2.2000 29 1 4.8205 -1.5622 2.7771 30 1 6.2814 -1.3937 0.0809 31 1 6.1063 -2.8113 1.1642 32 1 4.8840 -1.3945 -1.7929 33 1 5.2038 -3.1419 -1.6806 34 1 2.4300 -2.8308 -1.5628 35 1 1.4727 -3.8836 -3.8513 36 1 1.0660 -2.1519 -3.7859 37 1 2.5325 -4.8610 -6.2135 38 1 2.6088 -3.8515 -8.6305 39 1 1.5393 -0.7043 -6.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567363321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:24 Heat of formation + Delta-G solvation = 2.174512 kcal Electronic energy + Delta-G solvation = -21954.126537 eV Core-core repulsion = 18671.176578 eV Total energy + Delta-G solvation = -3282.949959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37424 -39.18025 -37.86566 -34.00237 -33.64338 -32.82375 -30.44902 -29.88000 -29.38772 -27.47537 -24.74604 -23.39056 -21.45175 -21.28872 -20.52619 -19.76369 -19.20100 -17.68035 -17.21716 -16.42299 -15.82993 -15.57403 -15.16017 -14.96145 -14.79541 -14.42446 -13.56072 -13.38423 -13.16110 -13.04624 -12.67067 -12.46762 -12.37769 -12.20294 -11.72165 -11.43146 -11.20826 -11.03701 -10.92280 -10.66352 -10.49118 -10.03903 -9.70378 -9.54980 -9.29273 -9.15289 -8.64886 -8.35423 -8.30752 -7.15641 -6.37863 -3.36951 1.94103 2.72560 3.22929 3.29649 3.38269 3.50490 3.63610 3.97020 4.52192 4.90075 4.93117 4.99833 5.18396 5.19808 5.25139 5.37334 5.47603 5.57167 5.57907 5.78254 5.82108 5.86750 5.90698 6.08606 6.10493 6.19234 6.23359 6.30750 6.31637 6.37444 6.59416 6.64072 6.75804 6.82572 7.14092 7.26591 7.60895 8.20337 8.24723 8.85152 8.91750 9.47146 10.17992 11.06434 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.005307 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.631842 B = 5274.469485 C = 6104.002948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.285 1.285 7 C -0.321 4.321 8 H 0.072 0.928 9 N -0.601 5.601 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.044 0.956 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.510 3.490 18 O -0.556 6.556 19 C -0.074 4.074 20 C -0.155 4.155 21 C -0.198 4.198 22 C -0.052 4.052 23 O -0.179 6.179 24 C -0.028 4.028 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.198 0.802 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 -6.754 -6.148 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.214 4.214 3 Si 0.897 3.103 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.449 4.449 8 H 0.089 0.911 9 N -0.328 5.328 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.062 0.938 15 C -0.010 4.010 16 N -0.357 5.357 17 C 0.296 3.704 18 O -0.435 6.435 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.217 4.217 22 C -0.120 4.120 23 O -0.075 6.075 24 C -0.096 4.096 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.215 0.785 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.330 -4.745 -6.800 10.432 hybrid contribution -0.120 -1.876 0.362 1.914 sum 6.210 -6.620 -6.438 11.128 Atomic orbital electron populations 1.70935 1.05789 1.29863 1.49384 1.25926 0.96397 1.00954 0.98074 0.83810 0.74310 0.75892 0.76328 1.22131 1.22827 1.21225 1.19803 0.84614 0.95048 1.45441 0.91081 1.44853 1.07653 1.23798 1.56458 1.22045 0.93584 0.92836 0.93562 1.22713 0.98154 0.98474 0.97542 1.22517 0.96544 0.99431 0.97689 1.21301 0.90036 0.93835 0.91200 0.93837 1.21877 0.85016 0.99855 0.94239 1.46143 1.13748 1.69832 1.05955 1.20434 0.90132 0.77256 0.82582 1.90636 1.38724 1.49587 1.64591 1.20000 0.96767 1.04495 0.90112 1.19847 1.06627 0.93873 0.95297 1.21644 1.06932 1.00488 0.92653 1.23862 1.06371 0.81901 0.99824 1.84036 1.67823 1.26413 1.29235 1.23858 1.05189 1.00148 0.80404 0.92733 0.95158 0.92422 0.91653 0.91421 0.91360 0.91502 0.92082 0.93363 0.75189 0.88533 0.87723 0.83874 0.78478 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 13.70 55.49 0.76 -26.12 16 2 C -0.01 -0.33 5.45 -17.43 -0.09 -0.42 16 3 Si 1.06 26.08 24.73 -169.99 -4.20 21.88 16 4 H -0.29 -6.86 6.83 56.52 0.39 -6.47 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.29 -6.84 6.21 56.52 0.35 -6.48 16 7 C -0.32 -8.15 8.74 -15.06 -0.13 -8.28 16 8 H 0.07 1.83 6.31 -52.49 -0.33 1.50 16 9 N -0.60 -13.43 2.92 -162.57 -0.47 -13.90 16 10 C 0.10 2.16 4.72 -2.53 -0.01 2.14 16 11 C -0.13 -2.07 7.08 -24.58 -0.17 -2.24 16 12 C -0.12 -1.88 6.47 -24.90 -0.16 -2.04 16 13 C 0.14 2.66 3.38 -66.96 -0.23 2.43 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 15 C 0.12 2.19 5.22 -4.04 -0.02 2.17 16 16 N -0.70 -13.45 4.80 -60.30 -0.29 -13.74 16 17 C 0.51 9.79 7.82 -10.99 -0.09 9.71 16 18 O -0.56 -12.40 16.02 5.56 0.09 -12.32 16 19 C -0.07 -1.16 6.22 -29.04 -0.18 -1.34 16 20 C -0.15 -2.43 4.66 -104.74 -0.49 -2.92 16 21 C -0.20 -2.76 10.87 -39.71 -0.43 -3.19 16 22 C -0.05 -0.65 12.09 29.41 0.36 -0.30 16 23 O -0.18 -2.60 10.65 5.71 0.06 -2.54 16 24 C -0.03 -0.43 12.01 29.42 0.35 -0.07 16 25 H 0.26 7.51 8.73 -40.82 -0.36 7.15 16 26 H 0.03 0.66 5.24 -51.93 -0.27 0.39 16 27 H 0.06 1.26 6.89 -51.93 -0.36 0.90 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.41 7.83 5.61 -40.82 -0.23 7.60 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.20 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -32.34 317.56 -6.03 -38.37 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.46 Total: 7.93 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.30 Total: -4.35 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.00 Total: -53.75 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.15 Total: -14.86 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.20 Total: 21.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.34 -6.03 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567363321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.544 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds