Wall clock time and date at job start Tue Mar 31 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99963 * 2 1 4 4 H 1.48501 * 109.46910 * 90.00317 * 3 2 1 5 5 H 1.48496 * 109.47127 * 330.00347 * 3 2 1 6 6 H 1.48497 * 109.47130 * 210.00095 * 3 2 1 7 7 C 1.38815 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99881 * 19.99633 * 7 2 1 9 9 N 1.36932 * 120.00092 * 199.99281 * 7 2 1 10 10 C 1.47429 * 125.64586 * 20.90869 * 9 7 2 11 11 C 1.54911 * 104.83041 * 155.83350 * 10 9 7 12 12 C 1.55154 * 101.58513 * 37.00548 * 11 10 9 13 13 C 1.47019 * 125.64827 * 200.59549 * 9 7 2 14 14 H 1.09003 * 109.88387 * 300.51402 * 13 9 7 15 15 C 1.53000 * 109.88386 * 61.68412 * 13 9 7 16 16 N 1.46505 * 109.46780 * 300.88014 * 15 13 9 17 17 C 1.34776 * 119.99698 * 173.59921 * 16 15 13 18 18 O 1.21273 * 120.00185 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99775 * 180.02562 * 17 16 15 20 20 C 1.50694 * 109.47282 * 180.02562 * 19 17 16 21 21 C 1.41380 * 126.58619 * 89.99228 * 20 19 17 22 22 C 1.34509 * 106.84588 * 179.97438 * 21 20 19 23 23 O 1.34298 * 108.42058 * 0.02562 * 22 21 20 24 24 C 1.34308 * 109.47860 * 359.76426 * 23 22 21 25 25 H 0.96996 * 119.99850 * 174.91044 * 1 2 3 26 26 H 1.08997 * 110.36717 * 274.67060 * 10 9 7 27 27 H 1.08999 * 110.36617 * 36.99141 * 10 9 7 28 28 H 1.08994 * 111.00512 * 155.08656 * 11 10 9 29 29 H 1.09001 * 111.00145 * 278.93019 * 11 10 9 30 30 H 1.09002 * 110.71878 * 82.85908 * 12 11 10 31 31 H 1.08998 * 110.72268 * 205.95687 * 12 11 10 32 32 H 1.08995 * 109.47154 * 60.87975 * 15 13 9 33 33 H 1.08994 * 109.46892 * 180.88087 * 15 13 9 34 34 H 0.97001 * 119.99802 * 353.59735 * 16 15 13 35 35 H 1.09007 * 109.47078 * 299.99755 * 19 17 16 36 36 H 1.08998 * 109.47642 * 59.99794 * 19 17 16 37 37 H 1.08008 * 126.57563 * 359.93311 * 21 20 19 38 38 H 1.08004 * 125.79388 * 179.97438 * 22 21 20 39 39 H 1.07995 * 125.79366 * 180.23649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3189 9 7 3.3178 -1.2378 0.4060 10 6 3.9823 -0.2306 1.2531 11 6 5.1608 -0.9859 1.9167 12 6 5.6184 -1.9214 0.7666 13 6 4.2895 -2.2899 0.0741 14 1 3.9330 -3.2527 0.4403 15 6 4.4945 -2.3497 -1.4410 16 7 3.2138 -2.6262 -2.0965 17 6 3.1246 -2.5964 -3.4409 18 8 4.1047 -2.3411 -4.1081 19 6 1.8071 -2.8802 -4.1152 20 6 1.9767 -2.7846 -5.6095 21 6 2.3307 -3.8356 -6.4864 22 6 2.3688 -3.3134 -7.7254 23 8 2.0590 -2.0091 -7.6459 24 6 1.8155 -1.6838 -6.3657 25 1 -0.4850 -0.8367 -0.0745 26 1 4.3547 0.5922 0.6429 27 1 3.2938 0.1404 2.0123 28 1 5.9564 -0.2970 2.2000 29 1 4.8205 -1.5622 2.7771 30 1 6.2814 -1.3937 0.0809 31 1 6.1063 -2.8113 1.1642 32 1 4.8840 -1.3945 -1.7929 33 1 5.2038 -3.1419 -1.6806 34 1 2.4300 -2.8308 -1.5628 35 1 1.4727 -3.8836 -3.8513 36 1 1.0660 -2.1519 -3.7859 37 1 2.5325 -4.8610 -6.2135 38 1 2.6088 -3.8515 -8.6305 39 1 1.5393 -0.7043 -6.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567363321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:23 Heat of formation + Delta-G solvation = -20.023349 kcal Electronic energy + Delta-G solvation = -21955.089108 eV Core-core repulsion = 18671.176578 eV Total energy + Delta-G solvation = -3283.912530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.45792 -40.72752 -39.41455 -35.47853 -34.93479 -34.74578 -31.69000 -31.61822 -30.71888 -28.73706 -26.33059 -25.15153 -22.78688 -22.48062 -21.77478 -21.31490 -20.64136 -19.52175 -18.41363 -17.88589 -17.33971 -16.80330 -16.71666 -16.54562 -16.21598 -15.51503 -15.44655 -15.08907 -14.64278 -14.55451 -13.93649 -13.79992 -13.67148 -13.42408 -13.26541 -12.95674 -12.76766 -12.66162 -12.43909 -12.10147 -11.97132 -11.61169 -11.35406 -11.18331 -11.02021 -10.64983 -10.51518 -9.90228 -9.44922 -9.07501 -8.46688 -5.40537 0.85719 1.39838 1.51752 1.59354 1.65979 1.71463 2.27299 2.49478 2.57042 3.18954 3.36185 3.79558 3.86111 3.91011 3.98839 4.04081 4.12398 4.21301 4.34508 4.43446 4.52321 4.56982 4.65780 4.74130 4.77440 4.81709 5.00696 5.02891 5.09813 5.14757 5.26579 5.28686 5.47142 5.56472 5.60072 5.69040 6.18402 6.23162 6.67330 6.88334 7.32859 7.53428 8.22861 8.97747 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.005307 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.631842 B = 5274.469485 C = 6104.002948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.066 4.066 3 Si 1.094 2.906 4 H -0.278 1.278 5 H -0.315 1.315 6 H -0.280 1.280 7 C -0.289 4.289 8 H 0.064 0.936 9 N -0.620 5.620 10 C 0.091 3.909 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.140 3.860 14 H 0.051 0.949 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.507 3.493 18 O -0.589 6.589 19 C -0.067 4.067 20 C -0.176 4.176 21 C -0.220 4.220 22 C -0.040 4.040 23 O -0.188 6.188 24 C -0.048 4.048 25 H 0.253 0.747 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.242 0.758 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.029 -8.071 -6.069 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.261 4.261 3 Si 0.924 3.076 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.207 1.207 7 C -0.419 4.419 8 H 0.081 0.919 9 N -0.346 5.346 10 C -0.033 4.033 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.069 0.931 15 C -0.007 4.007 16 N -0.359 5.359 17 C 0.294 3.706 18 O -0.470 6.470 19 C -0.106 4.106 20 C -0.178 4.178 21 C -0.239 4.239 22 C -0.107 4.107 23 O -0.084 6.084 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.178 0.822 38 H 0.258 0.742 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.445 -6.081 -6.694 12.374 hybrid contribution -0.693 -1.584 0.304 1.755 sum 7.752 -7.664 -6.390 12.636 Atomic orbital electron populations 1.71001 1.06833 1.29312 1.53415 1.26634 0.96480 1.03399 0.99597 0.83387 0.73469 0.73715 0.76984 1.20464 1.24403 1.20666 1.19832 0.85982 0.94200 1.41853 0.91900 1.45049 1.07485 1.25037 1.57044 1.22177 0.95022 0.92997 0.93118 1.22679 0.96759 0.98571 0.97547 1.22552 0.94713 1.00856 0.97168 1.21514 0.91098 0.92855 0.91158 0.93080 1.21855 0.85227 0.99234 0.94408 1.46225 1.13888 1.69586 1.06179 1.20984 0.90897 0.76268 0.82402 1.90610 1.40162 1.51115 1.65153 1.19970 0.94656 1.05742 0.90266 1.20063 1.07463 0.94949 0.95317 1.21946 1.07850 1.01089 0.92973 1.24726 1.03922 0.80994 1.01038 1.84043 1.67887 1.27593 1.28847 1.24116 1.05859 1.00681 0.80854 0.93760 0.95945 0.94203 0.88636 0.90482 0.90698 0.87948 0.94581 0.91346 0.75324 0.86080 0.88044 0.82237 0.74200 0.77472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.83 13.70 21.65 0.30 -57.54 16 2 C -0.07 -3.65 5.45 84.86 0.46 -3.19 16 3 Si 1.09 53.54 24.73 68.60 1.70 55.24 16 4 H -0.28 -12.70 6.83 99.48 0.68 -12.02 16 5 H -0.31 -16.02 7.11 99.48 0.71 -15.32 16 6 H -0.28 -13.24 6.21 99.48 0.62 -12.62 16 7 C -0.29 -14.72 8.74 84.03 0.73 -13.99 16 8 H 0.06 3.27 6.31 -2.91 -0.02 3.25 16 9 N -0.62 -26.93 2.92 -668.26 -1.95 -28.88 16 10 C 0.09 3.60 4.72 86.86 0.41 4.01 16 11 C -0.12 -3.27 7.08 31.99 0.23 -3.05 16 12 C -0.11 -3.02 6.47 31.78 0.21 -2.81 16 13 C 0.14 4.85 3.38 45.34 0.15 5.01 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C 0.12 4.30 5.22 86.38 0.45 4.75 16 16 N -0.71 -26.64 4.80 -463.07 -2.22 -28.86 16 17 C 0.51 19.37 7.82 87.66 0.69 20.06 16 18 O -0.59 -26.22 16.02 -3.01 -0.05 -26.26 16 19 C -0.07 -2.08 6.22 29.10 0.18 -1.90 16 20 C -0.18 -5.46 4.66 -19.94 -0.09 -5.55 16 21 C -0.22 -5.80 10.87 22.19 0.24 -5.56 16 22 C -0.04 -0.92 12.09 66.97 0.81 -0.11 16 23 O -0.19 -5.27 10.65 -2.48 -0.03 -5.29 16 24 C -0.05 -1.44 12.01 66.97 0.80 -0.63 16 25 H 0.25 15.02 8.73 -92.71 -0.81 14.21 16 26 H 0.02 0.94 5.24 -2.39 -0.01 0.93 16 27 H 0.04 1.70 6.89 -2.39 -0.02 1.68 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.91 7.84 -2.39 -0.02 1.89 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.41 15.52 5.61 -92.71 -0.52 15.00 16 35 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 36 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 38 H 0.24 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.21 5.59 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -71.07 317.56 3.40 -67.67 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.38 Total: 26.90 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.27 Total: -2.96 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.87 Total: -115.28 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.07 Total: -31.56 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 1.70 Total: 55.24 kcal Total: -71.07 3.40 -67.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567363321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.644 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds