Wall clock time and date at job start Mon Mar 30 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99855 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00380 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00075 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51684 * 59.89813 * 11 10 9 13 13 C 1.53300 * 109.50986 * 180.02562 * 11 10 9 14 14 N 1.47154 * 108.38311 * 172.22585 * 13 11 10 15 15 C 1.34773 * 120.98243 * 129.48723 * 14 13 11 16 16 O 1.21620 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.43199 * 119.99757 * 179.97438 * 15 14 13 18 18 C 9.47347 * 103.09660 * 181.71538 * 7 1 2 19 19 C 9.46445 * 131.31445 * 180.53365 * 9 1 2 20 20 C 1.53001 * 117.50145 * 24.40894 * 19 18 17 21 21 C 1.52996 * 117.50435 * 315.74639 * 19 18 17 22 22 C 1.47147 * 118.03256 * 309.45850 * 14 13 11 23 23 C 1.53291 * 108.38691 * 50.54066 * 22 14 13 24 24 O 1.42962 * 109.22253 * 307.69281 * 23 22 14 25 25 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08999 * 109.67385 * 291.94474 * 13 11 10 30 30 H 1.08990 * 109.68331 * 52.45738 * 13 11 10 31 31 H 1.09006 * 115.54996 * 170.07453 * 19 18 17 32 32 H 1.09000 * 117.49553 * 359.97438 * 20 19 18 33 33 H 1.09000 * 117.49888 * 145.02074 * 20 19 18 34 34 H 1.09002 * 117.50329 * 214.98634 * 21 19 18 35 35 H 1.09008 * 117.49118 * 359.97422 * 21 19 18 36 36 H 1.09007 * 109.68059 * 170.26248 * 22 14 13 37 37 H 1.09003 * 109.68617 * 290.81626 * 22 14 13 38 38 H 1.08999 * 109.51737 * 67.62027 * 23 22 14 39 39 H 1.09003 * 109.51424 * 187.72678 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.4319 -4.7591 -0.8923 13 6 1.8293 -6.1478 -0.0125 14 7 0.8630 -7.2413 0.1773 15 6 0.8467 -8.3042 -0.6512 16 8 1.6380 -8.3695 -1.5724 17 6 -0.1025 -9.3568 -0.4466 18 6 -0.8812 -10.2192 -0.2808 19 6 -1.8572 -11.3011 -0.0688 20 6 -3.2972 -11.0523 -0.5220 21 6 -2.9559 -11.0679 0.9701 22 6 -0.0843 -7.1402 1.2987 23 6 -0.7566 -5.7638 1.2411 24 8 0.2498 -4.7511 1.1670 25 1 -0.4851 0.8400 0.0004 26 1 0.3555 -2.3881 0.0038 27 1 2.6807 -3.7122 -0.9000 28 1 2.6887 -3.7168 0.8799 29 1 2.3413 -6.2718 -0.9667 30 1 2.5575 -6.1556 0.7985 31 1 -1.4659 -12.3135 -0.1688 32 1 -3.5221 -10.0876 -0.9768 33 1 -3.8534 -11.9012 -0.9198 34 1 -3.2877 -11.9269 1.5534 35 1 -2.9559 -10.1136 1.4970 36 1 -0.8396 -7.9215 1.2128 37 1 0.4507 -7.2482 2.2422 38 1 -1.3956 -5.7072 0.3598 39 1 -1.3586 -5.6148 2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570139353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:43 Heat of formation + Delta-G solvation = 21.943717 kcal Electronic energy + Delta-G solvation = -20865.911130 eV Core-core repulsion = 17583.818429 eV Total energy + Delta-G solvation = -3282.092702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39776 -38.37841 -38.00525 -35.11529 -34.41330 -33.09251 -32.12075 -30.18586 -28.32457 -26.24555 -24.51067 -23.52892 -22.93495 -22.73585 -21.27905 -20.47847 -18.32843 -17.16300 -16.93883 -16.71953 -16.17241 -15.61611 -15.43050 -15.09871 -14.59501 -14.51775 -14.06081 -13.48424 -13.15157 -13.04994 -12.71595 -12.62119 -12.36783 -12.20541 -12.05862 -11.70680 -11.58854 -11.03149 -10.89874 -10.77721 -10.69306 -10.47136 -10.30999 -10.08262 -10.01571 -9.92246 -9.67790 -8.85122 -8.63289 -6.87735 -5.71336 -3.00046 1.26722 1.88885 2.64959 3.12482 3.47231 3.51938 3.53210 3.53939 3.63874 3.91952 4.26298 4.43423 4.45313 4.58302 4.71090 4.84653 4.92406 5.07433 5.10442 5.12984 5.27786 5.31693 5.43974 5.52710 5.55792 5.61226 5.62512 5.68743 5.84159 5.92962 6.21103 6.28299 6.56111 6.69484 6.90952 7.07245 7.43142 7.73445 7.84832 8.46766 9.58542 10.15592 10.51643 11.51490 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.003091 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.184895 B = 9056.715551 C = 9522.103581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.164 3.836 11 C 0.073 3.927 12 H 0.065 0.935 13 C 0.087 3.913 14 N -0.602 5.602 15 C 0.633 3.367 16 O -0.522 6.522 17 C -0.208 4.208 18 C -0.058 4.058 19 C -0.066 4.066 20 C -0.159 4.159 21 C -0.160 4.160 22 C 0.073 3.927 23 C 0.047 3.953 24 O -0.355 6.355 25 H 0.254 0.746 26 H 0.388 0.612 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 -23.859 3.339 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.014 3.986 12 H 0.083 0.917 13 C -0.036 4.036 14 N -0.335 5.335 15 C 0.422 3.578 16 O -0.400 6.400 17 C -0.211 4.211 18 C -0.061 4.061 19 C -0.083 4.083 20 C -0.196 4.196 21 C -0.196 4.196 22 C -0.050 4.050 23 C -0.032 4.032 24 O -0.273 6.273 25 H 0.064 0.936 26 H 0.222 0.778 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.829 -23.596 2.999 24.490 hybrid contribution 0.071 0.614 -0.133 0.633 sum -5.757 -22.981 2.866 23.864 Atomic orbital electron populations 1.69677 1.05120 1.25555 1.57710 1.24745 0.95530 0.97679 1.03055 0.86172 0.78636 0.83802 0.77473 1.21754 1.21798 1.20749 1.19229 0.91029 0.84072 1.42686 0.91117 1.42211 1.06074 0.99434 1.89338 1.20627 0.92312 0.84625 0.98900 1.22832 0.93170 0.94116 0.88486 0.91732 1.22452 0.91353 0.85084 1.04668 1.47980 1.35719 1.20338 1.29435 1.14712 0.81595 0.79736 0.81757 1.90862 1.40030 1.78184 1.30915 1.20523 0.98774 0.97898 1.03899 1.21317 0.93823 0.94235 0.96679 1.18916 0.87089 0.94910 1.07431 1.23131 0.94480 1.04446 0.97535 1.23136 0.99801 1.04418 0.92289 1.22546 0.93008 0.99745 0.89701 1.22916 0.90905 0.86360 1.02979 1.88176 1.46391 1.50547 1.42179 0.93571 0.77818 0.94554 0.95255 0.87640 0.89836 0.84700 0.87976 0.87300 0.87316 0.87979 0.89298 0.89973 0.92774 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.07 5.50 -59.91 -0.33 -19.40 16 10 C 0.16 3.37 5.95 -4.04 -0.02 3.35 16 11 C 0.07 1.26 2.86 -26.57 -0.08 1.18 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C 0.09 1.27 5.93 -3.53 -0.02 1.25 16 14 N -0.60 -8.26 3.02 -175.15 -0.53 -8.79 16 15 C 0.63 9.55 7.56 -14.34 -0.11 9.45 16 16 O -0.52 -9.56 16.55 5.26 0.09 -9.47 16 17 C -0.21 -2.66 11.61 -38.84 -0.45 -3.12 16 18 C -0.06 -0.60 13.44 -37.11 -0.50 -1.10 16 19 C -0.07 -0.43 6.21 -93.39 -0.58 -1.01 16 20 C -0.16 -0.83 10.21 -26.69 -0.27 -1.10 16 21 C -0.16 -0.77 10.21 -26.70 -0.27 -1.04 16 22 C 0.07 0.80 6.52 -3.54 -0.02 0.78 16 23 C 0.05 0.59 6.98 37.31 0.26 0.85 16 24 O -0.36 -6.24 10.14 -35.23 -0.36 -6.60 16 25 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.39 10.82 7.55 -40.82 -0.31 10.51 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.58 7.08 -51.93 -0.37 1.22 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.09 0.81 6.43 -51.93 -0.33 0.48 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -34.79 337.04 -8.29 -43.08 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.63 Total: 4.44 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.31 Total: 1.98 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.13 Total: -56.25 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.27 Total: -16.07 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.79 -8.29 -43.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570139353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.022 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds