Wall clock time and date at job start Mon Mar 30 2020 23:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99855 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00380 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00075 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51684 * 59.89813 * 11 10 9 13 13 C 1.53300 * 109.50986 * 180.02562 * 11 10 9 14 14 N 1.47154 * 108.38311 * 172.22585 * 13 11 10 15 15 C 1.34773 * 120.98243 * 129.48723 * 14 13 11 16 16 O 1.21620 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.43199 * 119.99757 * 179.97438 * 15 14 13 18 18 C 9.47347 * 103.09660 * 181.71538 * 7 1 2 19 19 C 9.46445 * 131.31445 * 180.53365 * 9 1 2 20 20 C 1.53001 * 117.50145 * 24.40894 * 19 18 17 21 21 C 1.52996 * 117.50435 * 315.74639 * 19 18 17 22 22 C 1.47147 * 118.03256 * 309.45850 * 14 13 11 23 23 C 1.53291 * 108.38691 * 50.54066 * 22 14 13 24 24 O 1.42962 * 109.22253 * 307.69281 * 23 22 14 25 25 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 27 27 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 28 28 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 29 29 H 1.08999 * 109.67385 * 291.94474 * 13 11 10 30 30 H 1.08990 * 109.68331 * 52.45738 * 13 11 10 31 31 H 1.09006 * 115.54996 * 170.07453 * 19 18 17 32 32 H 1.09000 * 117.49553 * 359.97438 * 20 19 18 33 33 H 1.09000 * 117.49888 * 145.02074 * 20 19 18 34 34 H 1.09002 * 117.50329 * 214.98634 * 21 19 18 35 35 H 1.09008 * 117.49118 * 359.97422 * 21 19 18 36 36 H 1.09007 * 109.68059 * 170.26248 * 22 14 13 37 37 H 1.09003 * 109.68617 * 290.81626 * 22 14 13 38 38 H 1.08999 * 109.51737 * 67.62027 * 23 22 14 39 39 H 1.09003 * 109.51424 * 187.72678 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.4319 -4.7591 -0.8923 13 6 1.8293 -6.1478 -0.0125 14 7 0.8630 -7.2413 0.1773 15 6 0.8467 -8.3042 -0.6512 16 8 1.6380 -8.3695 -1.5724 17 6 -0.1025 -9.3568 -0.4466 18 6 -0.8812 -10.2192 -0.2808 19 6 -1.8572 -11.3011 -0.0688 20 6 -3.2972 -11.0523 -0.5220 21 6 -2.9559 -11.0679 0.9701 22 6 -0.0843 -7.1402 1.2987 23 6 -0.7566 -5.7638 1.2411 24 8 0.2498 -4.7511 1.1670 25 1 -0.4851 0.8400 0.0004 26 1 0.3555 -2.3881 0.0038 27 1 2.6807 -3.7122 -0.9000 28 1 2.6887 -3.7168 0.8799 29 1 2.3413 -6.2718 -0.9667 30 1 2.5575 -6.1556 0.7985 31 1 -1.4659 -12.3135 -0.1688 32 1 -3.5221 -10.0876 -0.9768 33 1 -3.8534 -11.9012 -0.9198 34 1 -3.2877 -11.9269 1.5534 35 1 -2.9559 -10.1136 1.4970 36 1 -0.8396 -7.9215 1.2128 37 1 0.4507 -7.2482 2.2422 38 1 -1.3956 -5.7072 0.3598 39 1 -1.3586 -5.6148 2.1375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570139353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:42 Heat of formation + Delta-G solvation = -1.679768 kcal Electronic energy + Delta-G solvation = -20866.935522 eV Core-core repulsion = 17583.818429 eV Total energy + Delta-G solvation = -3283.117093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.56249 -39.62667 -38.50984 -36.71345 -35.88752 -34.17147 -33.65196 -31.88403 -29.54349 -27.75710 -25.65517 -24.89556 -24.01372 -23.28607 -22.68592 -21.61186 -19.41885 -19.12591 -18.01927 -17.63894 -17.31262 -16.79816 -16.74810 -16.10990 -15.93065 -15.84273 -15.44399 -15.04890 -14.58988 -14.44133 -14.07106 -13.58748 -13.50011 -13.16758 -12.99229 -12.81033 -12.66781 -12.41396 -12.36223 -12.31879 -12.07383 -11.92521 -11.80064 -11.45833 -11.23355 -11.11014 -10.95994 -10.74002 -9.80172 -9.00936 -7.93744 -5.23404 0.29927 1.01306 1.48147 1.50696 1.59075 1.64906 2.21710 2.56667 2.67784 2.77297 3.04828 3.39964 3.46470 3.72060 3.82614 3.84138 3.91353 4.01153 4.02730 4.09525 4.25536 4.36809 4.38090 4.48398 4.58964 4.68856 4.77587 4.78918 4.92296 4.97112 5.06394 5.07917 5.11291 5.22722 5.48908 5.98741 6.05963 6.16533 6.27577 6.72400 7.33834 8.07433 8.32363 9.30062 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.003091 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.184895 B = 9056.715551 C = 9522.103581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.086 3.914 12 H 0.049 0.951 13 C 0.095 3.905 14 N -0.601 5.601 15 C 0.633 3.367 16 O -0.568 6.568 17 C -0.265 4.265 18 C -0.015 4.015 19 C -0.089 4.089 20 C -0.155 4.155 21 C -0.145 4.145 22 C 0.079 3.921 23 C 0.041 3.959 24 O -0.383 6.383 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -25.651 4.475 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.034 3.966 11 C 0.027 3.973 12 H 0.067 0.933 13 C -0.027 4.027 14 N -0.333 5.333 15 C 0.424 3.576 16 O -0.449 6.449 17 C -0.268 4.268 18 C -0.018 4.018 19 C -0.107 4.107 20 C -0.192 4.192 21 C -0.182 4.182 22 C -0.043 4.043 23 C -0.036 4.036 24 O -0.302 6.302 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.174 0.826 32 H 0.109 0.891 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.405 -25.420 4.160 26.542 hybrid contribution 0.157 1.038 -0.452 1.143 sum -6.248 -24.382 3.707 25.442 Atomic orbital electron populations 1.69842 1.06727 1.26081 1.59405 1.25627 0.96456 1.01267 1.03595 0.85078 0.77688 0.79153 0.77449 1.21345 1.22111 1.19284 1.19675 0.91629 0.85181 1.41382 0.90310 1.42404 1.05735 1.00819 1.89387 1.20773 0.92952 0.83741 0.99177 1.22505 0.92557 0.94083 0.88121 0.93279 1.22247 0.91384 0.84148 1.04951 1.48042 1.35765 1.19627 1.29834 1.14970 0.81402 0.80240 0.81002 1.90820 1.42011 1.79297 1.32742 1.20202 1.00342 0.99115 1.07105 1.22112 0.92572 0.93207 0.93883 1.19333 0.87063 0.94505 1.09790 1.23252 0.92997 1.04831 0.98142 1.23285 0.97457 1.05335 0.92120 1.22670 0.93115 0.99219 0.89307 1.23195 0.90127 0.86199 1.04060 1.88115 1.47500 1.52738 1.41858 0.94002 0.79274 0.93689 0.94785 0.88312 0.88421 0.82554 0.89074 0.85126 0.84916 0.88208 0.87053 0.88332 0.93249 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -39.58 5.50 -343.46 -1.89 -41.46 16 10 C 0.16 6.69 5.95 86.38 0.51 7.20 16 11 C 0.09 3.03 2.86 30.70 0.09 3.12 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C 0.10 2.81 5.93 86.36 0.51 3.32 16 14 N -0.60 -16.33 3.02 -826.31 -2.50 -18.83 16 15 C 0.63 19.36 7.56 85.49 0.65 20.01 16 16 O -0.57 -21.53 16.55 -4.09 -0.07 -21.59 16 17 C -0.26 -6.64 11.61 30.02 0.35 -6.30 16 18 C -0.02 -0.29 13.44 31.14 0.42 0.13 16 19 C -0.09 -0.91 6.21 -12.59 -0.08 -0.99 16 20 C -0.16 -1.15 10.21 30.62 0.31 -0.83 16 21 C -0.15 -0.87 10.21 30.62 0.31 -0.56 16 22 C 0.08 1.61 6.52 86.35 0.56 2.17 16 23 C 0.04 1.01 6.98 72.08 0.50 1.51 16 24 O -0.38 -13.46 10.14 -148.98 -1.51 -14.97 16 25 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.38 21.58 7.55 -92.70 -0.70 20.88 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 3.05 7.08 -2.39 -0.02 3.03 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.11 1.80 6.43 -2.38 -0.02 1.78 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.13 2.51 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -76.55 337.04 2.16 -74.39 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.36 Total: 22.80 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.45 Total: 11.30 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -4.10 Total: -121.00 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.58 Total: -36.56 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.55 2.16 -74.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570139353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.708 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds