Wall clock time and date at job start Tue Mar 31 2020 00:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47204 * 119.99515 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 181.96894 * 7 2 1 9 9 C 1.50696 * 119.99977 * 1.97120 * 7 2 1 10 10 H 1.09001 * 109.46910 * 175.33757 * 9 7 2 11 11 C 1.50695 * 109.47530 * 55.33425 * 9 7 2 12 12 O 1.21283 * 120.00501 * 240.00352 * 11 9 7 13 13 N 1.34779 * 120.00080 * 59.99483 * 11 9 7 14 14 C 1.46503 * 120.00328 * 180.02562 * 13 11 9 15 15 C 1.52991 * 109.46962 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46986 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47380 * 179.97438 * 16 15 14 18 18 N 1.46298 * 113.99912 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47387 * 295.33233 * 9 7 2 20 20 C 1.38230 * 120.00383 * 167.22793 * 19 9 7 21 21 C 1.38230 * 120.00043 * 180.02562 * 20 19 9 22 22 C 1.38229 * 120.00376 * 359.95097 * 21 20 19 23 23 C 1.38236 * 119.99772 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00185 * 0.06932 * 23 22 21 25 25 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99602 * 0.02562 * 13 11 9 27 27 H 1.09006 * 109.46643 * 300.00312 * 14 13 11 28 28 H 1.09001 * 109.46665 * 60.00067 * 14 13 11 29 29 H 1.09003 * 109.47661 * 299.99945 * 15 14 13 30 30 H 1.09001 * 109.47667 * 60.00324 * 15 14 13 31 31 H 1.08997 * 109.47288 * 300.00185 * 16 15 14 32 32 H 1.09001 * 109.47231 * 60.00083 * 16 15 14 33 33 H 1.00900 * 110.99547 * 180.02562 * 18 17 16 34 34 H 1.00900 * 110.99888 * 303.95192 * 18 17 16 35 35 H 1.08002 * 119.99547 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99875 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00421 * 179.72884 * 22 21 20 38 38 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0327 9 6 1.2516 -2.4988 -0.0438 10 1 1.9594 -3.3242 -0.1201 11 6 0.3358 -2.5100 -1.2405 12 8 -0.8613 -2.6297 -1.0870 13 7 0.8470 -2.3867 -2.4814 14 6 -0.0433 -2.3970 -3.6449 15 6 0.7848 -2.2431 -4.9220 16 6 -0.1450 -2.2545 -6.1371 17 8 0.6283 -2.1101 -7.3301 18 7 -0.1669 -2.1077 -8.5581 19 6 0.4360 -2.6512 1.2143 20 6 -0.5370 -3.6298 1.2930 21 6 -1.2854 -3.7692 2.4468 22 6 -1.0601 -2.9306 3.5224 23 6 -0.0860 -1.9529 3.4443 24 6 0.6618 -1.8129 2.2901 25 1 -0.4851 0.8400 -0.0004 26 1 1.8045 -2.2911 -2.6042 27 1 -0.5882 -3.3406 -3.6769 28 1 -0.7507 -1.5713 -3.5682 29 1 1.3300 -1.2997 -4.8902 30 1 1.4919 -3.0690 -4.9985 31 1 -0.6899 -3.1980 -6.1689 32 1 -0.8525 -1.4288 -6.0610 33 1 0.4226 -2.0040 -9.3704 34 1 -0.7310 -2.9416 -8.6251 35 1 -0.7130 -4.2850 0.4527 36 1 -2.0459 -4.5336 2.5081 37 1 -1.6478 -3.0367 4.4222 38 1 0.0898 -1.2974 4.2844 39 1 1.4226 -1.0487 2.2290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580045420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:18 Heat of formation + Delta-G solvation = -18.440026 kcal Electronic energy + Delta-G solvation = -21536.507123 eV Core-core repulsion = 18252.663251 eV Total energy + Delta-G solvation = -3283.843872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.94856 -37.61062 -37.06165 -34.56039 -33.57602 -31.56492 -30.78343 -29.64546 -29.29319 -27.28523 -24.84361 -23.61336 -21.52060 -21.20873 -20.45562 -19.10949 -17.00359 -16.78587 -16.30406 -15.83072 -15.78159 -15.13075 -14.90514 -14.79774 -14.26029 -13.72490 -13.61578 -13.41052 -12.85282 -12.43102 -12.18960 -12.09933 -11.97584 -11.69105 -11.35066 -11.24860 -11.10772 -10.93063 -10.76967 -10.49655 -10.39991 -10.02421 -9.64264 -9.36038 -9.16750 -8.68973 -8.29149 -7.97866 -7.66180 -7.36904 -6.11379 -4.28079 2.56430 2.63265 2.65171 3.22466 3.30244 3.31052 4.14447 4.28226 4.42885 4.92842 5.00991 5.04830 5.15365 5.28308 5.36265 5.59234 5.72102 5.88183 5.90876 6.00276 6.08302 6.26403 6.35627 6.43796 6.58341 6.62114 6.70619 6.83873 6.93520 6.94152 7.16339 7.24541 7.53319 7.58908 7.67604 7.70858 7.82537 8.19355 8.30417 8.63072 8.82977 9.38614 9.71776 10.88983 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.004914 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.113402 B = 5696.191166 C = 6909.266846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.056 3.944 10 H 0.057 0.943 11 C 0.550 3.450 12 O -0.548 6.548 13 N -0.736 5.736 14 C 0.133 3.867 15 C -0.126 4.126 16 C 0.065 3.935 17 O -0.243 6.243 18 N -0.676 5.676 19 C -0.014 4.014 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.065 4.065 25 H 0.265 0.735 26 H 0.397 0.603 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.364 0.636 34 H 0.338 0.662 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -5.670 -7.829 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.035 3.965 10 H 0.075 0.925 11 C 0.340 3.660 12 O -0.424 6.424 13 N -0.390 5.390 14 C 0.008 3.992 15 C -0.165 4.165 16 C -0.013 4.013 17 O -0.257 6.257 18 N -0.242 5.242 19 C -0.015 4.015 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.166 4.166 24 C -0.083 4.083 25 H 0.076 0.924 26 H 0.230 0.770 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.155 -4.939 -7.435 8.928 hybrid contribution 0.919 0.351 -0.517 1.111 sum 1.074 -4.588 -7.953 9.244 Atomic orbital electron populations 1.70064 1.05434 1.27077 1.44848 1.25052 0.94810 0.99159 0.94308 0.86731 0.79719 0.83296 0.78857 1.20072 1.21291 1.19970 1.20655 0.92873 0.88754 1.55654 0.91560 1.17879 0.92739 0.98164 0.87709 0.92533 1.21023 0.89158 0.72231 0.83635 1.90535 1.16690 1.49570 1.85647 1.45759 1.10017 1.77877 1.05335 1.20848 0.92979 1.01332 0.84047 1.21679 0.98765 1.03884 0.92163 1.22392 0.94823 1.00665 0.83386 1.90663 1.27651 1.96427 1.10966 1.64371 1.20612 1.43222 0.96034 1.19825 0.94569 0.92191 0.94913 1.20968 0.95978 0.98877 0.96036 1.20816 1.00608 1.00398 0.94478 1.20768 0.99581 0.97858 0.98129 1.20989 0.98242 0.99038 0.98357 1.21154 0.98500 0.97231 0.91407 0.92445 0.77001 0.92744 0.92141 0.90256 0.90868 0.93168 0.92032 0.82258 0.85197 0.87526 0.88132 0.88235 0.88065 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.01 10.89 55.43 0.60 -22.41 16 2 C 0.07 1.89 3.99 -17.82 -0.07 1.81 16 3 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.14 7.12 -34.44 -0.25 -13.39 16 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C 0.55 12.94 5.45 -10.99 -0.06 12.88 16 12 O -0.55 -14.56 13.95 5.55 0.08 -14.49 16 13 N -0.74 -14.34 5.46 -60.30 -0.33 -14.67 16 14 C 0.13 2.23 5.67 -4.04 -0.02 2.21 16 15 C -0.13 -1.67 5.70 -26.73 -0.15 -1.82 16 16 C 0.07 0.81 6.39 37.16 0.24 1.05 16 17 O -0.24 -3.14 11.97 -13.92 -0.17 -3.30 16 18 N -0.68 -6.53 10.79 60.35 0.65 -5.88 16 19 C -0.01 -0.34 4.52 -104.62 -0.47 -0.81 16 20 C -0.10 -2.29 8.21 -39.59 -0.33 -2.62 16 21 C -0.14 -3.00 10.05 -39.59 -0.40 -3.40 16 22 C -0.15 -2.90 10.05 -39.59 -0.40 -3.30 16 23 C -0.15 -3.13 10.05 -39.58 -0.40 -3.52 16 24 C -0.07 -1.53 8.20 -39.58 -0.32 -1.85 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.40 7.00 8.36 -40.82 -0.34 6.65 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.36 2.63 9.25 -39.29 -0.36 2.27 16 34 H 0.34 2.48 9.18 -39.29 -0.36 2.11 16 35 H 0.11 2.40 7.01 -52.49 -0.37 2.03 16 36 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.13 3.10 6.02 -52.49 -0.32 2.78 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -30.97 329.20 -7.64 -38.61 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.52 Total: 14.03 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.89 Total: -11.70 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.93 Total: -42.96 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.09 Total: -17.79 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.97 -7.64 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580045420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.171 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds