Wall clock time and date at job start Tue Mar 31 2020 00:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48500 * 109.47037 * 239.99922 * 3 2 1 5 5 H 1.48499 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47204 * 119.99515 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 181.96894 * 7 2 1 9 9 C 1.50696 * 119.99977 * 1.97120 * 7 2 1 10 10 H 1.09001 * 109.46910 * 175.33757 * 9 7 2 11 11 C 1.50695 * 109.47530 * 55.33425 * 9 7 2 12 12 O 1.21283 * 120.00501 * 240.00352 * 11 9 7 13 13 N 1.34779 * 120.00080 * 59.99483 * 11 9 7 14 14 C 1.46503 * 120.00328 * 180.02562 * 13 11 9 15 15 C 1.52991 * 109.46962 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46986 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47380 * 179.97438 * 16 15 14 18 18 N 1.46298 * 113.99912 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47387 * 295.33233 * 9 7 2 20 20 C 1.38230 * 120.00383 * 167.22793 * 19 9 7 21 21 C 1.38230 * 120.00043 * 180.02562 * 20 19 9 22 22 C 1.38229 * 120.00376 * 359.95097 * 21 20 19 23 23 C 1.38236 * 119.99772 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00185 * 0.06932 * 23 22 21 25 25 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99602 * 0.02562 * 13 11 9 27 27 H 1.09006 * 109.46643 * 300.00312 * 14 13 11 28 28 H 1.09001 * 109.46665 * 60.00067 * 14 13 11 29 29 H 1.09003 * 109.47661 * 299.99945 * 15 14 13 30 30 H 1.09001 * 109.47667 * 60.00324 * 15 14 13 31 31 H 1.08997 * 109.47288 * 300.00185 * 16 15 14 32 32 H 1.09001 * 109.47231 * 60.00083 * 16 15 14 33 33 H 1.00900 * 110.99547 * 180.02562 * 18 17 16 34 34 H 1.00900 * 110.99888 * 303.95192 * 18 17 16 35 35 H 1.08002 * 119.99547 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99875 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00421 * 179.72884 * 22 21 20 38 38 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00212 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0327 9 6 1.2516 -2.4988 -0.0438 10 1 1.9594 -3.3242 -0.1201 11 6 0.3358 -2.5100 -1.2405 12 8 -0.8613 -2.6297 -1.0870 13 7 0.8470 -2.3867 -2.4814 14 6 -0.0433 -2.3970 -3.6449 15 6 0.7848 -2.2431 -4.9220 16 6 -0.1450 -2.2545 -6.1371 17 8 0.6283 -2.1101 -7.3301 18 7 -0.1669 -2.1077 -8.5581 19 6 0.4360 -2.6512 1.2143 20 6 -0.5370 -3.6298 1.2930 21 6 -1.2854 -3.7692 2.4468 22 6 -1.0601 -2.9306 3.5224 23 6 -0.0860 -1.9529 3.4443 24 6 0.6618 -1.8129 2.2901 25 1 -0.4851 0.8400 -0.0004 26 1 1.8045 -2.2911 -2.6042 27 1 -0.5882 -3.3406 -3.6769 28 1 -0.7507 -1.5713 -3.5682 29 1 1.3300 -1.2997 -4.8902 30 1 1.4919 -3.0690 -4.9985 31 1 -0.6899 -3.1980 -6.1689 32 1 -0.8525 -1.4288 -6.0610 33 1 0.4226 -2.0040 -9.3704 34 1 -0.7310 -2.9416 -8.6251 35 1 -0.7130 -4.2850 0.4527 36 1 -2.0459 -4.5336 2.5081 37 1 -1.6478 -3.0367 4.4222 38 1 0.0898 -1.2974 4.2844 39 1 1.4226 -1.0487 2.2290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580045420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:17 Heat of formation + Delta-G solvation = -39.589337 kcal Electronic energy + Delta-G solvation = -21537.424226 eV Core-core repulsion = 18252.663251 eV Total energy + Delta-G solvation = -3284.760975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69850 -39.18103 -38.15776 -35.99310 -35.45514 -32.89435 -32.53931 -31.33289 -30.31907 -28.96533 -26.34033 -25.25278 -22.96411 -22.67065 -22.12349 -20.86063 -18.62275 -17.96427 -17.43625 -17.17025 -17.10597 -16.75226 -16.61343 -16.37533 -15.77305 -15.32535 -15.17483 -14.81749 -14.25498 -14.13937 -13.92921 -13.67411 -13.61600 -13.03225 -12.91139 -12.70561 -12.60312 -12.51994 -12.30390 -12.23568 -11.76628 -11.46279 -11.39051 -11.16112 -10.61794 -10.15586 -9.99821 -9.64556 -9.36099 -9.08095 -8.05380 -6.25294 0.89610 0.95014 1.44035 1.46946 1.52177 1.73064 2.34260 2.47894 2.84769 3.21979 3.37666 3.90178 3.94754 4.19731 4.34629 4.36135 4.37908 4.51176 4.53852 4.59600 4.64699 4.71361 4.83999 5.02338 5.06351 5.11938 5.17075 5.21826 5.47701 5.56515 5.72119 5.89279 5.91086 5.93657 5.99001 6.01338 6.18379 6.44743 6.55017 6.77836 7.10686 7.43814 7.94494 8.93314 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.004914 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.113402 B = 5696.191166 C = 6909.266846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.046 3.954 10 H 0.070 0.930 11 C 0.548 3.452 12 O -0.584 6.584 13 N -0.728 5.728 14 C 0.137 3.863 15 C -0.111 4.111 16 C 0.071 3.929 17 O -0.266 6.266 18 N -0.675 5.675 19 C -0.036 4.036 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.255 0.745 26 H 0.406 0.594 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.377 0.623 34 H 0.352 0.648 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -6.156 -7.955 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.025 3.975 10 H 0.088 0.912 11 C 0.337 3.663 12 O -0.464 6.464 13 N -0.381 5.381 14 C 0.012 3.988 15 C -0.150 4.150 16 C -0.007 4.007 17 O -0.279 6.279 18 N -0.246 5.246 19 C -0.037 4.037 20 C -0.136 4.136 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.106 4.106 25 H 0.064 0.936 26 H 0.241 0.759 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.553 -5.437 -7.589 9.352 hybrid contribution 0.805 0.437 -0.511 1.049 sum 1.357 -5.000 -8.100 9.616 Atomic orbital electron populations 1.70234 1.06855 1.26743 1.47028 1.25567 0.95080 1.01623 0.94114 0.85900 0.78473 0.79889 0.79214 1.19260 1.22506 1.19283 1.20872 0.93127 0.89131 1.54126 0.90947 1.18013 0.93134 0.98315 0.88086 0.91215 1.21036 0.88613 0.71935 0.84728 1.90501 1.18050 1.51488 1.86357 1.45677 1.10866 1.76408 1.05123 1.20881 0.92761 1.00529 0.84621 1.21490 0.98502 1.04134 0.90885 1.22252 0.94193 1.01155 0.83070 1.90608 1.28851 1.96535 1.11954 1.64365 1.20608 1.44394 0.95202 1.19952 0.95496 0.93078 0.95183 1.21044 0.96625 0.99045 0.96927 1.21198 1.00492 1.00991 0.93807 1.21179 0.99034 0.96592 0.99187 1.21313 0.97869 0.99610 0.98246 1.21138 0.99361 0.97425 0.92656 0.93572 0.75926 0.92199 0.94712 0.90980 0.89213 0.91521 0.93045 0.80791 0.83598 0.88176 0.85227 0.84432 0.85623 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.72 10.89 21.45 0.23 -48.48 16 2 C 0.04 2.06 3.99 84.65 0.34 2.39 16 3 Si 0.94 40.84 29.54 68.60 2.03 42.87 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.53 -25.96 7.12 25.60 0.18 -25.78 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.05 2.16 2.78 -13.03 -0.04 2.13 16 10 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 11 C 0.55 26.11 5.45 87.66 0.48 26.59 16 12 O -0.58 -31.78 13.95 -3.04 -0.04 -31.82 16 13 N -0.73 -28.40 5.46 -463.06 -2.53 -30.92 16 14 C 0.14 4.58 5.67 86.38 0.49 5.07 16 15 C -0.11 -2.84 5.70 30.59 0.17 -2.67 16 16 C 0.07 1.68 6.39 71.98 0.46 2.14 16 17 O -0.27 -6.46 11.97 -50.15 -0.60 -7.06 16 18 N -0.68 -11.81 10.79 37.02 0.40 -11.42 16 19 C -0.04 -1.75 4.52 -19.86 -0.09 -1.84 16 20 C -0.12 -5.40 8.21 22.27 0.18 -5.22 16 21 C -0.15 -5.84 10.05 22.27 0.22 -5.62 16 22 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 23 C -0.15 -6.22 10.05 22.27 0.22 -6.00 16 24 C -0.09 -4.14 8.20 22.27 0.18 -3.96 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.41 14.11 8.36 -92.70 -0.77 13.34 16 27 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.38 4.75 9.25 -89.69 -0.83 3.92 16 34 H 0.35 4.44 9.18 -89.69 -0.82 3.62 16 35 H 0.10 4.59 7.01 -2.91 -0.02 4.57 16 36 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.11 5.50 6.02 -2.91 -0.02 5.49 16 Total: -1.00 -66.52 329.20 1.18 -65.35 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -1.35 Total: 39.36 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.03 Total: -17.86 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -1.89 Total: -90.82 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.64 Total: -38.89 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -66.52 1.18 -65.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580045420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.757 kcal (2) G-P(sol) polarization free energy of solvation -66.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds