Wall clock time and date at job start Tue Mar 31 2020 00:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48501 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47223 * 299.99336 * 3 2 1 6 6 H 1.48500 * 109.47293 * 60.00005 * 3 2 1 7 7 C 1.37883 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.46797 * 174.84278 * 9 7 2 11 11 H 1.09006 * 109.47447 * 54.19101 * 10 9 7 12 12 N 1.46498 * 109.47282 * 174.18944 * 10 9 7 13 13 C 1.34780 * 120.00219 * 278.69674 * 12 10 9 14 14 O 1.21278 * 119.99587 * 355.01376 * 13 12 10 15 15 C 1.50699 * 120.00235 * 175.01606 * 13 12 10 16 16 H 1.08992 * 109.47312 * 54.99353 * 15 13 12 17 17 O 1.42892 * 109.47263 * 174.99879 * 15 13 12 18 18 C 1.53005 * 109.47081 * 294.99876 * 15 13 12 19 19 N 1.46894 * 109.47162 * 180.02562 * 18 15 13 20 20 C 1.50702 * 109.47344 * 294.19032 * 10 9 7 21 21 C 1.38231 * 120.00094 * 279.72768 * 20 10 9 22 22 C 1.38239 * 120.00104 * 179.79029 * 21 20 10 23 23 C 1.38235 * 119.99494 * 0.43864 * 22 21 20 24 24 C 1.38226 * 120.00185 * 359.81561 * 23 22 21 25 25 C 1.38233 * 119.99779 * 100.00346 * 20 10 9 26 26 H 0.97006 * 120.00314 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46928 * 54.84448 * 9 7 2 28 28 H 1.08996 * 109.47123 * 294.84564 * 9 7 2 29 29 H 0.97003 * 119.99927 * 98.69137 * 12 10 9 30 30 H 0.96707 * 114.00137 * 59.99878 * 17 15 13 31 31 H 1.09009 * 109.47239 * 59.99988 * 18 15 13 32 32 H 1.09002 * 109.47145 * 300.00442 * 18 15 13 33 33 H 1.00893 * 111.00000 * 56.04724 * 19 18 15 34 34 H 1.00901 * 110.99789 * 180.02562 * 19 18 15 35 35 H 1.08004 * 119.99795 * 359.97438 * 21 20 10 36 36 H 1.07996 * 120.00174 * 180.27800 * 22 21 20 37 37 H 1.07999 * 119.99330 * 179.83765 * 23 22 21 38 38 H 1.08004 * 119.99861 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.00529 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2403 -3.6591 -0.1285 11 1 2.9961 -3.5807 0.6530 12 7 1.5241 -4.9295 0.0106 13 6 1.2206 -5.4015 1.2360 14 8 1.6184 -4.8222 2.2245 15 6 0.3872 -6.6490 1.3779 16 1 0.8507 -7.4613 0.8182 17 8 0.3010 -7.0098 2.7579 18 6 -1.0175 -6.3889 0.8301 19 7 -1.8301 -7.6047 0.9690 20 6 2.9066 -3.6033 -1.4791 21 6 2.2508 -4.0909 -2.5940 22 6 2.8602 -4.0358 -3.8335 23 6 4.1291 -3.5012 -3.9566 24 6 4.7869 -3.0184 -2.8409 25 6 4.1758 -3.0697 -1.6020 26 1 -0.4851 0.8401 -0.0004 27 1 0.5573 -2.5181 -0.8399 28 1 0.6951 -2.5977 0.9329 29 1 1.2682 -5.4310 -0.7794 30 1 -0.1024 -6.3319 3.3173 31 1 -0.9518 -6.1137 -0.2226 32 1 -1.4811 -5.5765 1.3897 33 1 -1.8530 -7.9167 1.9282 34 1 -2.7631 -7.4586 0.6136 35 1 1.2611 -4.5123 -2.4970 36 1 2.3461 -4.4127 -4.7053 37 1 4.6062 -3.4606 -4.9246 38 1 5.7781 -2.6004 -2.9372 39 1 4.6898 -2.6923 -0.7304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:53 Heat of formation + Delta-G solvation = -71.232376 kcal Electronic energy + Delta-G solvation = -21771.765144 eV Core-core repulsion = 18485.632024 eV Total energy + Delta-G solvation = -3286.133120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.99425 -38.79912 -36.84723 -35.13284 -33.86406 -32.85801 -31.27535 -30.47364 -28.90524 -28.08669 -24.83975 -22.96402 -22.37433 -22.12752 -20.60299 -19.59390 -18.05481 -16.85750 -16.59524 -16.19643 -16.03297 -15.12460 -14.94482 -14.63060 -14.59025 -14.10987 -13.94439 -13.69698 -13.34883 -12.99358 -12.85915 -12.49300 -12.36073 -12.17959 -11.77169 -11.56830 -11.18186 -10.89774 -10.77619 -10.71698 -10.65787 -10.08348 -9.98523 -9.43018 -9.08819 -8.89885 -8.59135 -8.50247 -8.39034 -8.08130 -6.04383 -4.05430 1.78992 1.82862 2.86755 3.29568 3.36828 3.40173 3.49213 4.16512 4.24653 4.43707 4.56634 4.80232 4.98440 5.09575 5.22206 5.25568 5.33497 5.35657 5.49256 5.55409 5.68167 5.88443 5.96219 6.15853 6.35430 6.47409 6.66443 6.75259 6.83052 6.86441 6.88163 7.11773 7.24740 7.39979 7.44056 7.57422 7.62312 7.90511 7.94489 8.30933 8.55516 8.98456 9.57846 11.07364 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.006218 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.734855 B = 4502.086149 C = 5881.965094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.179 3.821 11 H 0.086 0.914 12 N -0.718 5.718 13 C 0.483 3.517 14 O -0.528 6.528 15 C 0.095 3.905 16 H 0.127 0.873 17 O -0.540 6.540 18 C 0.034 3.966 19 N -0.845 5.845 20 C -0.048 4.048 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.098 4.098 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.393 0.607 30 H 0.381 0.619 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.347 0.653 34 H 0.344 0.656 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -12.433 -4.408 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.077 3.923 11 H 0.104 0.896 12 N -0.371 5.371 13 C 0.267 3.733 14 O -0.404 6.404 15 C 0.031 3.969 16 H 0.144 0.856 17 O -0.344 6.344 18 C -0.098 4.098 19 N -0.376 5.376 20 C -0.049 4.049 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.227 0.773 30 H 0.230 0.770 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.648 -12.762 -4.363 13.587 hybrid contribution -0.663 2.091 0.241 2.207 sum 0.985 -10.671 -4.122 11.481 Atomic orbital electron populations 1.69964 1.06047 1.26489 1.50900 1.24945 0.94801 0.99170 0.95230 0.86550 0.80218 0.83839 0.77531 1.19632 1.21058 1.21025 1.21086 0.93064 0.90349 1.50463 0.92323 1.19408 0.93550 0.90485 0.97723 1.20356 0.95535 0.83350 0.93105 0.89620 1.46342 1.58969 1.24213 1.07553 1.21305 0.81586 0.86467 0.83959 1.90740 1.52962 1.59249 1.37427 1.21901 0.94433 0.95933 0.84583 0.85585 1.86551 1.84993 1.45711 1.17151 1.22369 0.93288 0.91779 1.02314 1.58627 1.18268 1.33239 1.27450 1.19881 0.93759 0.96196 0.95033 1.20825 0.99286 1.01225 0.92497 1.20978 0.95449 1.00474 0.96975 1.20985 0.95565 1.00533 0.98145 1.21045 0.99821 1.00124 0.92847 1.20976 0.94561 0.98378 0.97692 0.93090 0.95848 0.95951 0.77304 0.77005 0.89378 0.94170 0.83989 0.84371 0.86732 0.86660 0.86833 0.86588 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.04 8.53 -34.44 -0.29 -14.34 16 8 H 0.06 1.57 6.79 -52.49 -0.36 1.21 16 9 C 0.03 0.66 4.68 -27.89 -0.13 0.52 16 10 C 0.18 3.62 2.19 -69.09 -0.15 3.47 16 11 H 0.09 1.90 7.49 -51.93 -0.39 1.51 16 12 N -0.72 -11.78 5.01 -54.94 -0.28 -12.05 16 13 C 0.48 8.23 7.03 -10.98 -0.08 8.15 16 14 O -0.53 -11.39 16.02 -14.30 -0.23 -11.62 16 15 C 0.09 1.23 3.65 -27.88 -0.10 1.13 16 16 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 17 O -0.54 -7.27 12.33 -55.09 -0.68 -7.95 16 18 C 0.03 0.39 6.44 -3.82 -0.02 0.36 16 19 N -0.84 -8.11 9.62 -10.37 -0.10 -8.21 16 20 C -0.05 -0.88 4.50 -104.63 -0.47 -1.35 16 21 C -0.12 -1.93 9.02 -39.58 -0.36 -2.28 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 24 C -0.12 -1.84 10.05 -39.59 -0.40 -2.23 16 25 C -0.10 -1.72 8.83 -39.58 -0.35 -2.07 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.02 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.39 5.18 6.82 -40.82 -0.28 4.91 16 30 H 0.38 4.52 8.79 45.56 0.40 4.92 16 31 H 0.09 0.95 8.10 -51.92 -0.42 0.53 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.35 3.17 8.38 -39.30 -0.33 2.84 16 34 H 0.34 2.73 9.08 -39.29 -0.36 2.37 16 35 H 0.11 1.63 6.95 -52.48 -0.36 1.26 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.12 2.12 7.84 -52.49 -0.41 1.70 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -33.45 332.83 -8.40 -41.85 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.60 Total: 13.56 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.25 Total: -11.47 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.36 Total: -46.06 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.91 Total: -19.57 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -8.40 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.382 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds