Wall clock time and date at job start Tue Mar 31 2020 00:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48501 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47223 * 299.99336 * 3 2 1 6 6 H 1.48500 * 109.47293 * 60.00005 * 3 2 1 7 7 C 1.37883 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.46797 * 174.84278 * 9 7 2 11 11 H 1.09006 * 109.47447 * 54.19101 * 10 9 7 12 12 N 1.46498 * 109.47282 * 174.18944 * 10 9 7 13 13 C 1.34780 * 120.00219 * 278.69674 * 12 10 9 14 14 O 1.21278 * 119.99587 * 355.01376 * 13 12 10 15 15 C 1.50699 * 120.00235 * 175.01606 * 13 12 10 16 16 H 1.08992 * 109.47312 * 54.99353 * 15 13 12 17 17 O 1.42892 * 109.47263 * 174.99879 * 15 13 12 18 18 C 1.53005 * 109.47081 * 294.99876 * 15 13 12 19 19 N 1.46894 * 109.47162 * 180.02562 * 18 15 13 20 20 C 1.50702 * 109.47344 * 294.19032 * 10 9 7 21 21 C 1.38231 * 120.00094 * 279.72768 * 20 10 9 22 22 C 1.38239 * 120.00104 * 179.79029 * 21 20 10 23 23 C 1.38235 * 119.99494 * 0.43864 * 22 21 20 24 24 C 1.38226 * 120.00185 * 359.81561 * 23 22 21 25 25 C 1.38233 * 119.99779 * 100.00346 * 20 10 9 26 26 H 0.97006 * 120.00314 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46928 * 54.84448 * 9 7 2 28 28 H 1.08996 * 109.47123 * 294.84564 * 9 7 2 29 29 H 0.97003 * 119.99927 * 98.69137 * 12 10 9 30 30 H 0.96707 * 114.00137 * 59.99878 * 17 15 13 31 31 H 1.09009 * 109.47239 * 59.99988 * 18 15 13 32 32 H 1.09002 * 109.47145 * 300.00442 * 18 15 13 33 33 H 1.00893 * 111.00000 * 56.04724 * 19 18 15 34 34 H 1.00901 * 110.99789 * 180.02562 * 19 18 15 35 35 H 1.08004 * 119.99795 * 359.97438 * 21 20 10 36 36 H 1.07996 * 120.00174 * 180.27800 * 22 21 20 37 37 H 1.07999 * 119.99330 * 179.83765 * 23 22 21 38 38 H 1.08004 * 119.99861 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.00529 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2403 -3.6591 -0.1285 11 1 2.9961 -3.5807 0.6530 12 7 1.5241 -4.9295 0.0106 13 6 1.2206 -5.4015 1.2360 14 8 1.6184 -4.8222 2.2245 15 6 0.3872 -6.6490 1.3779 16 1 0.8507 -7.4613 0.8182 17 8 0.3010 -7.0098 2.7579 18 6 -1.0175 -6.3889 0.8301 19 7 -1.8301 -7.6047 0.9690 20 6 2.9066 -3.6033 -1.4791 21 6 2.2508 -4.0909 -2.5940 22 6 2.8602 -4.0358 -3.8335 23 6 4.1291 -3.5012 -3.9566 24 6 4.7869 -3.0184 -2.8409 25 6 4.1758 -3.0697 -1.6020 26 1 -0.4851 0.8401 -0.0004 27 1 0.5573 -2.5181 -0.8399 28 1 0.6951 -2.5977 0.9329 29 1 1.2682 -5.4310 -0.7794 30 1 -0.1024 -6.3319 3.3173 31 1 -0.9518 -6.1137 -0.2226 32 1 -1.4811 -5.5765 1.3897 33 1 -1.8530 -7.9167 1.9282 34 1 -2.7631 -7.4586 0.6136 35 1 1.2611 -4.5123 -2.4970 36 1 2.3461 -4.4127 -4.7053 37 1 4.6062 -3.4606 -4.9246 38 1 5.7781 -2.6004 -2.9372 39 1 4.6898 -2.6923 -0.7304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580048067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:52 Heat of formation + Delta-G solvation = -97.464036 kcal Electronic energy + Delta-G solvation = -21772.902634 eV Core-core repulsion = 18485.632024 eV Total energy + Delta-G solvation = -3287.270610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38660 -40.05383 -38.03099 -36.67297 -35.06019 -34.63297 -32.76242 -31.67961 -30.44209 -29.42456 -26.57877 -24.20010 -23.89677 -23.42183 -21.88942 -21.12019 -19.32864 -18.67235 -17.65673 -17.56114 -17.31335 -16.66724 -16.31565 -16.14988 -15.90627 -15.41066 -15.19249 -14.85152 -14.63281 -14.51919 -14.21337 -14.13869 -13.87958 -13.34597 -13.14733 -12.98528 -12.95066 -12.66090 -12.56847 -12.00868 -11.89930 -11.83316 -11.64830 -11.35990 -10.66191 -10.58207 -10.08198 -9.72770 -9.70477 -9.45939 -8.22190 -6.30073 0.54898 0.60947 1.35808 1.36900 1.47824 1.50311 2.13172 2.40307 2.99945 3.12707 3.13343 3.54912 3.79564 3.84253 3.93383 4.04681 4.06527 4.24540 4.35332 4.48940 4.63401 4.68207 4.72795 4.79771 4.82675 5.13463 5.20747 5.26710 5.44967 5.51468 5.65191 5.69611 5.73305 5.88612 6.06162 6.18495 6.22675 6.37236 6.54079 6.59696 6.81542 7.20096 7.37224 8.90216 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.006218 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.734855 B = 4502.086149 C = 5881.965094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.196 3.804 11 H 0.056 0.944 12 N -0.705 5.705 13 C 0.478 3.522 14 O -0.580 6.580 15 C 0.109 3.891 16 H 0.148 0.852 17 O -0.546 6.546 18 C 0.042 3.958 19 N -0.840 5.840 20 C -0.075 4.075 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.123 4.123 26 H 0.262 0.738 27 H 0.006 0.994 28 H -0.020 1.020 29 H 0.411 0.589 30 H 0.387 0.613 31 H 0.096 0.904 32 H 0.026 0.974 33 H 0.351 0.649 34 H 0.355 0.645 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -13.243 -6.823 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.092 3.908 11 H 0.074 0.926 12 N -0.359 5.359 13 C 0.264 3.736 14 O -0.460 6.460 15 C 0.046 3.954 16 H 0.166 0.834 17 O -0.351 6.351 18 C -0.090 4.090 19 N -0.372 5.372 20 C -0.075 4.075 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.024 0.976 28 H -0.002 1.002 29 H 0.249 0.751 30 H 0.237 0.763 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.164 0.836 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.223 -13.609 -6.807 15.378 hybrid contribution -0.848 2.296 0.963 2.630 sum 1.376 -11.313 -5.844 12.808 Atomic orbital electron populations 1.70085 1.07583 1.27465 1.52007 1.25824 0.95673 1.02880 0.94931 0.85525 0.79310 0.79366 0.77697 1.18606 1.20151 1.20787 1.21453 0.93387 0.91547 1.49777 0.92152 1.19144 0.93731 0.92217 0.94571 1.19755 0.93750 0.83240 0.94102 0.92550 1.46150 1.58212 1.23042 1.08457 1.22211 0.80986 0.87263 0.83150 1.90710 1.55011 1.61181 1.39060 1.21914 0.94707 0.93943 0.84825 0.83446 1.86528 1.85100 1.45939 1.17518 1.22246 0.92296 0.92123 1.02361 1.58606 1.18905 1.31862 1.27846 1.19763 0.94634 0.98768 0.94383 1.21061 0.99912 1.01098 0.92621 1.21409 0.95628 0.99392 0.97174 1.21459 0.95348 0.98602 0.99192 1.21356 1.00879 0.99791 0.92130 1.21072 0.94868 0.99494 0.98697 0.92934 0.97597 1.00188 0.75143 0.76334 0.88568 0.95598 0.83556 0.83031 0.85388 0.83228 0.83239 0.84212 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.52 -29.76 8.53 25.60 0.22 -29.54 16 8 H 0.06 3.33 6.79 -2.91 -0.02 3.31 16 9 C 0.04 2.18 4.68 29.85 0.14 2.32 16 10 C 0.20 8.29 2.19 44.24 0.10 8.39 16 11 H 0.06 2.69 7.49 -2.38 -0.02 2.67 16 12 N -0.71 -23.72 5.01 -446.11 -2.23 -25.95 16 13 C 0.48 16.79 7.03 87.66 0.62 17.41 16 14 O -0.58 -26.46 16.02 15.97 0.26 -26.21 16 15 C 0.11 2.76 3.65 29.85 0.11 2.87 16 16 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 17 O -0.55 -14.49 12.33 -129.99 -1.60 -16.10 16 18 C 0.04 0.90 6.44 86.31 0.56 1.46 16 19 N -0.84 -14.60 9.62 -186.71 -1.80 -16.40 16 20 C -0.07 -2.76 4.50 -19.87 -0.09 -2.85 16 21 C -0.13 -3.94 9.02 22.27 0.20 -3.74 16 22 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 23 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 25 C -0.12 -4.35 8.83 22.27 0.20 -4.15 16 26 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 27 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 28 H -0.02 -1.22 8.08 -2.39 -0.02 -1.24 16 29 H 0.41 10.62 6.82 -92.71 -0.63 9.99 16 30 H 0.39 9.34 8.79 -74.05 -0.65 8.69 16 31 H 0.10 1.94 8.10 -2.38 -0.02 1.92 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.35 5.83 8.38 -89.70 -0.75 5.08 16 34 H 0.36 4.97 9.08 -89.69 -0.81 4.15 16 35 H 0.13 3.43 6.95 -2.91 -0.02 3.41 16 36 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.11 3.96 7.84 -2.91 -0.02 3.93 16 Total: -1.00 -75.09 332.83 -1.64 -76.73 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: -1.75 Total: 33.36 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.18 Total: -16.09 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -3.75 Total: -98.71 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.35 Total: -42.30 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.09 -1.64 -76.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.734 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds