Wall clock time and date at job start Tue Mar 31 2020 00:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00051 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46820 * 179.97438 * 19 18 16 21 21 C 1.53007 * 109.46855 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47081 * 179.97438 * 21 20 19 23 23 N 1.46301 * 114.00202 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 26 26 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 27 27 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 30 30 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 31 31 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 32 32 H 1.08994 * 109.47116 * 299.99651 * 19 18 16 33 33 H 1.08997 * 109.47258 * 59.99818 * 19 18 16 34 34 H 1.08994 * 109.47287 * 299.99910 * 20 19 18 35 35 H 1.08997 * 109.47057 * 60.00058 * 20 19 18 36 36 H 1.08994 * 109.47317 * 300.00158 * 21 20 19 37 37 H 1.09005 * 109.46768 * 60.00334 * 21 20 19 38 38 H 1.00891 * 110.99826 * 56.04355 * 23 22 21 39 39 H 1.00902 * 111.00296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 6 3.1139 -3.2134 4.8385 20 6 4.3436 -3.2635 5.7475 21 6 3.9173 -3.0163 7.1961 22 8 5.0656 -3.0638 8.0452 23 7 4.7691 -2.8394 9.4602 24 1 -0.4850 0.8401 0.0004 25 1 -0.1491 -1.4399 -1.5696 26 1 -1.2908 -3.5336 -2.1567 27 1 -0.4681 -5.6806 -1.2807 28 1 1.5024 -5.7540 0.1899 29 1 3.4896 -4.6754 0.9637 30 1 3.7296 -2.9264 0.7359 31 1 4.4561 -3.6051 3.2405 32 1 2.6434 -2.2333 4.9169 33 1 2.4047 -3.9824 5.1444 34 1 4.8137 -4.2437 5.6690 35 1 5.0531 -2.4947 5.4417 36 1 3.4474 -2.0360 7.2743 37 1 3.2076 -3.7850 7.5021 38 1 4.0802 -3.4966 9.7938 39 1 5.6095 -2.8821 10.0170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:36 Heat of formation + Delta-G solvation = -29.434668 kcal Electronic energy + Delta-G solvation = -20956.967602 eV Core-core repulsion = 17672.646966 eV Total energy + Delta-G solvation = -3284.320636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.14315 -37.56284 -37.15820 -34.94633 -33.54455 -32.16640 -31.45594 -29.53428 -29.36589 -26.96694 -25.20525 -24.41377 -21.78694 -20.89352 -20.44472 -19.19221 -17.24449 -17.08532 -16.57939 -16.13952 -15.98203 -15.59525 -15.21635 -14.79268 -14.39912 -13.98781 -13.62232 -13.39076 -12.94960 -12.82352 -12.52933 -12.16747 -11.71591 -11.67164 -11.49925 -11.45869 -11.08866 -11.04979 -10.84929 -10.69253 -10.65133 -10.36320 -9.43671 -9.31432 -9.29894 -9.08961 -9.04956 -8.61627 -7.26804 -7.24902 -6.65196 -4.26313 2.45200 2.84704 3.02544 3.10692 3.14039 3.31202 3.48860 3.78014 3.98675 4.68325 4.73755 4.75896 4.97606 5.12682 5.33220 5.44534 5.56462 5.64809 5.83536 5.97563 6.00059 6.08700 6.23509 6.33698 6.42531 6.45115 6.57334 6.77180 6.82274 6.88534 7.17040 7.33947 7.47501 7.69571 7.95192 8.03158 8.11291 8.18083 8.37968 8.70389 8.96840 9.01005 9.06823 10.29781 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.004334 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.604112 B = 6459.649329 C = 7781.328154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.078 3.922 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.460 4.460 8 H 0.075 0.925 9 C 0.130 3.870 10 C -0.162 4.162 11 C -0.106 4.106 12 C -0.242 4.242 13 C -0.081 4.081 14 C -0.182 4.182 15 C -0.068 4.068 16 C 0.515 3.485 17 O -0.511 6.511 18 N -0.747 5.747 19 C 0.126 3.874 20 C -0.126 4.126 21 C 0.064 3.936 22 O -0.244 6.244 23 N -0.675 5.675 24 H 0.278 0.722 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.395 0.605 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.339 0.661 39 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 -4.793 11.067 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.490 4.490 8 H 0.093 0.907 9 C 0.128 3.872 10 C -0.182 4.182 11 C -0.124 4.124 12 C -0.262 4.262 13 C -0.099 4.099 14 C -0.184 4.184 15 C -0.108 4.108 16 C 0.302 3.698 17 O -0.384 6.384 18 N -0.403 5.403 19 C 0.002 3.998 20 C -0.165 4.165 21 C -0.014 4.014 22 O -0.258 6.258 23 N -0.241 5.241 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.228 0.772 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.150 0.850 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.214 -3.781 10.983 14.227 hybrid contribution 0.840 -0.259 0.426 0.977 sum 9.055 -4.040 11.409 15.115 Atomic orbital electron populations 1.69842 1.07498 1.28857 1.35317 1.25839 0.94660 1.01001 0.92430 0.86419 0.80762 0.81286 0.78959 1.19729 1.18467 1.20071 1.19449 0.97149 0.91095 1.41283 0.90723 1.17333 0.90780 0.91264 0.87863 1.21279 0.99336 0.96596 1.00966 1.20672 0.98444 0.93479 0.99808 1.20291 1.01551 0.96176 1.08153 1.20289 0.95928 0.95671 0.98020 1.18993 1.00624 0.94023 1.04747 1.20246 0.98768 1.01684 0.90106 1.21117 0.85702 0.75706 0.87262 1.90710 1.18216 1.45885 1.83574 1.46074 1.11079 1.76535 1.06585 1.21003 0.95400 1.02071 0.81365 1.21667 0.98918 1.03565 0.92358 1.22362 0.88430 1.01444 0.89163 1.90647 1.29653 1.95403 1.10091 1.64367 1.15840 1.53923 0.89999 0.91083 0.86588 0.89631 0.89718 0.89794 0.90784 0.89004 0.77184 0.91433 0.91873 0.90681 0.90198 0.91832 0.92983 0.85050 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.35 10.98 55.55 0.61 -20.74 16 2 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 3 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.20 8.46 -37.74 -0.32 -12.52 16 8 H 0.07 1.86 6.36 -52.48 -0.33 1.52 16 9 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 10 C -0.16 -4.39 8.68 -38.87 -0.34 -4.73 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 13 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 14 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.07 -1.34 5.35 -29.04 -0.16 -1.49 16 16 C 0.52 10.42 7.82 -10.99 -0.09 10.34 16 17 O -0.51 -13.05 16.03 5.56 0.09 -12.96 16 18 N -0.75 -11.13 5.56 -60.30 -0.33 -11.47 16 19 C 0.13 1.69 5.67 -4.04 -0.02 1.67 16 20 C -0.13 -1.27 5.70 -26.73 -0.15 -1.43 16 21 C 0.06 0.65 6.39 37.16 0.24 0.89 16 22 O -0.24 -2.67 11.97 -13.92 -0.17 -2.84 16 23 N -0.67 -5.53 10.79 60.35 0.65 -4.88 16 24 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 25 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 30 H 0.09 1.72 6.48 -51.93 -0.34 1.38 16 31 H 0.39 4.50 8.47 -40.82 -0.35 4.16 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.34 2.04 9.18 -39.30 -0.36 1.68 16 39 H 0.37 2.14 9.25 -39.29 -0.36 1.78 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -33.58 334.55 -7.72 -41.30 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.43 Total: 11.20 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.16 Total: -18.72 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.93 Total: -37.09 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.08 Total: -15.80 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.58 -7.72 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.867 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds