Wall clock time and date at job start Tue Mar 31 2020 00:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00051 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46820 * 179.97438 * 19 18 16 21 21 C 1.53007 * 109.46855 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47081 * 179.97438 * 21 20 19 23 23 N 1.46301 * 114.00202 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 26 26 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 27 27 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 30 30 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 31 31 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 32 32 H 1.08994 * 109.47116 * 299.99651 * 19 18 16 33 33 H 1.08997 * 109.47258 * 59.99818 * 19 18 16 34 34 H 1.08994 * 109.47287 * 299.99910 * 20 19 18 35 35 H 1.08997 * 109.47057 * 60.00058 * 20 19 18 36 36 H 1.08994 * 109.47317 * 300.00158 * 21 20 19 37 37 H 1.09005 * 109.46768 * 60.00334 * 21 20 19 38 38 H 1.00891 * 110.99826 * 56.04355 * 23 22 21 39 39 H 1.00902 * 111.00296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 6 3.1139 -3.2134 4.8385 20 6 4.3436 -3.2635 5.7475 21 6 3.9173 -3.0163 7.1961 22 8 5.0656 -3.0638 8.0452 23 7 4.7691 -2.8394 9.4602 24 1 -0.4850 0.8401 0.0004 25 1 -0.1491 -1.4399 -1.5696 26 1 -1.2908 -3.5336 -2.1567 27 1 -0.4681 -5.6806 -1.2807 28 1 1.5024 -5.7540 0.1899 29 1 3.4896 -4.6754 0.9637 30 1 3.7296 -2.9264 0.7359 31 1 4.4561 -3.6051 3.2405 32 1 2.6434 -2.2333 4.9169 33 1 2.4047 -3.9824 5.1444 34 1 4.8137 -4.2437 5.6690 35 1 5.0531 -2.4947 5.4417 36 1 3.4474 -2.0360 7.2743 37 1 3.2076 -3.7850 7.5021 38 1 4.0802 -3.4966 9.7938 39 1 5.6095 -2.8821 10.0170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:35 Heat of formation + Delta-G solvation = -53.513192 kcal Electronic energy + Delta-G solvation = -20958.011725 eV Core-core repulsion = 17672.646966 eV Total energy + Delta-G solvation = -3285.364759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72108 -39.15445 -38.19079 -36.18961 -35.45733 -33.61478 -32.81192 -31.32530 -30.35218 -28.56564 -26.96398 -25.66625 -22.82361 -22.72232 -22.09146 -20.84078 -19.06112 -18.01123 -17.72168 -17.28540 -17.19965 -16.94780 -16.63641 -16.21565 -16.05093 -15.39904 -15.25027 -14.72759 -14.46656 -14.36747 -14.04895 -13.56909 -13.28381 -13.06037 -12.90005 -12.78816 -12.68507 -12.52328 -12.45760 -12.31971 -12.09297 -11.46549 -11.30181 -11.15715 -10.99631 -10.72413 -10.00935 -9.96994 -9.20430 -9.15415 -8.55509 -6.24691 1.01666 1.14790 1.36909 1.49420 1.55289 1.71791 1.92297 2.21807 2.50497 2.83373 3.76600 3.84513 3.93021 4.14859 4.19416 4.34419 4.42768 4.46886 4.54393 4.58304 4.64833 4.71385 4.77047 4.82659 5.03165 5.08055 5.13941 5.27142 5.38549 5.56925 5.58921 5.81230 5.91603 6.06229 6.16484 6.17382 6.23774 6.45729 6.72508 6.79354 7.01433 7.14432 7.53518 8.42204 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.004334 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.604112 B = 6459.649329 C = 7781.328154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.030 3.970 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.248 1.248 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.096 3.904 10 C -0.197 4.197 11 C -0.117 4.117 12 C -0.245 4.245 13 C -0.092 4.092 14 C -0.187 4.187 15 C -0.068 4.068 16 C 0.515 3.485 17 O -0.575 6.575 18 N -0.725 5.725 19 C 0.127 3.873 20 C -0.110 4.110 21 C 0.066 3.934 22 O -0.264 6.264 23 N -0.677 5.677 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.352 0.648 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -5.820 12.086 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.183 4.183 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.171 1.171 6 H -0.195 1.195 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.093 3.907 10 C -0.216 4.216 11 C -0.136 4.136 12 C -0.264 4.264 13 C -0.110 4.110 14 C -0.189 4.189 15 C -0.108 4.108 16 C 0.303 3.697 17 O -0.453 6.453 18 N -0.380 5.380 19 C 0.002 3.998 20 C -0.149 4.149 21 C -0.012 4.012 22 O -0.278 6.278 23 N -0.247 5.247 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.164 0.836 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.507 -4.838 12.012 16.676 hybrid contribution 0.140 -0.079 0.185 0.244 sum 10.647 -4.916 12.197 16.920 Atomic orbital electron populations 1.69940 1.09238 1.29905 1.36839 1.26763 0.95372 1.04594 0.91594 0.85318 0.79724 0.76506 0.78930 1.19544 1.17126 1.19468 1.19736 0.97663 0.91808 1.42261 0.89842 1.17761 0.91396 0.92925 0.88580 1.21304 1.00885 0.96689 1.02752 1.20948 0.98971 0.93456 1.00193 1.20717 1.01619 0.96738 1.07349 1.20747 0.95707 0.96910 0.97617 1.19506 1.01728 0.93326 1.04303 1.20306 0.97148 1.04406 0.88897 1.21182 0.85328 0.74962 0.88251 1.90694 1.20877 1.49183 1.84515 1.45817 1.11410 1.74323 1.06410 1.21040 0.96985 1.00761 0.80986 1.21490 0.97098 1.04697 0.91631 1.22297 0.88480 1.01290 0.89147 1.90595 1.30131 1.95441 1.11609 1.64369 1.17004 1.54635 0.88715 0.90769 0.88663 0.87836 0.86751 0.86415 0.86546 0.88127 0.74732 0.93589 0.92186 0.88923 0.89830 0.92886 0.91924 0.83650 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.90 10.98 21.83 0.24 -46.66 16 2 C 0.03 1.60 5.16 85.26 0.44 2.04 16 3 Si 0.97 39.69 29.59 68.60 2.03 41.72 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.48 -26.22 8.46 23.46 0.20 -26.02 16 8 H 0.08 4.17 6.36 -2.91 -0.02 4.15 16 9 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 10 C -0.20 -11.05 8.68 22.73 0.20 -10.85 16 11 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 12 C -0.25 -11.29 10.05 22.46 0.23 -11.06 16 13 C -0.09 -4.14 9.66 22.22 0.21 -3.92 16 14 C -0.19 -8.98 4.43 -19.40 -0.09 -9.06 16 15 C -0.07 -2.54 5.35 29.10 0.16 -2.38 16 16 C 0.51 20.26 7.82 87.65 0.69 20.95 16 17 O -0.57 -29.69 16.03 -3.04 -0.05 -29.74 16 18 N -0.72 -20.12 5.56 -463.07 -2.57 -22.69 16 19 C 0.13 3.24 5.67 86.38 0.49 3.73 16 20 C -0.11 -1.97 5.70 30.60 0.17 -1.80 16 21 C 0.07 1.23 6.39 71.98 0.46 1.69 16 22 O -0.26 -5.28 11.97 -50.16 -0.60 -5.88 16 23 N -0.68 -9.83 10.79 37.02 0.40 -9.43 16 24 H 0.28 14.52 8.30 -92.71 -0.77 13.75 16 25 H 0.10 5.61 6.23 -2.91 -0.02 5.59 16 26 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 27 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.12 3.30 8.05 -2.39 -0.02 3.28 16 30 H 0.10 3.57 6.48 -2.39 -0.02 3.55 16 31 H 0.42 8.12 8.47 -92.71 -0.79 7.33 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.35 3.56 9.18 -89.70 -0.82 2.73 16 39 H 0.38 3.71 9.25 -89.69 -0.83 2.88 16 Total: -1.00 -75.45 334.55 1.36 -74.09 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -1.35 Total: 35.78 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.26 Total: -37.19 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.93 Total: -78.79 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.65 Total: -35.62 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -75.45 1.36 -74.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.576 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds