Wall clock time and date at job start Tue Mar 31 2020 00:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47287 * 299.99818 * 3 2 1 6 6 H 1.48493 * 109.47500 * 60.00143 * 3 2 1 7 7 C 1.40021 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.41314 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78562 * 180.02562 * 9 7 2 11 11 C 1.38353 * 119.14559 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.68001 * 359.97438 * 11 10 9 13 13 C 1.39757 * 119.49746 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58843 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46691 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46623 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.46997 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47240 * 180.02562 * 19 18 17 21 21 O 1.20828 * 120.00000 * 0.02562 * 20 19 18 22 22 O 1.34230 * 119.99729 * 179.97438 * 20 19 18 23 23 N 1.31979 * 120.82686 * 0.26306 * 13 12 11 24 24 H 0.97003 * 119.99668 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.42711 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.65930 * 179.97438 * 11 10 9 27 27 H 1.08007 * 120.25203 * 180.02562 * 12 11 10 28 28 H 0.96999 * 120.00144 * 179.97438 * 14 13 12 29 29 H 1.08993 * 109.47068 * 59.99266 * 15 14 13 30 30 H 1.09000 * 109.46872 * 299.99477 * 15 14 13 31 31 H 1.08993 * 109.47839 * 59.99891 * 16 15 14 32 32 H 1.09000 * 109.47160 * 299.99453 * 16 15 14 33 33 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 34 34 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 35 35 H 1.09000 * 109.47486 * 299.99829 * 18 17 16 36 36 H 1.09001 * 109.47362 * 60.00551 * 18 17 16 37 37 H 1.09000 * 109.46866 * 300.00212 * 19 18 17 38 38 H 1.08996 * 109.47261 * 59.99820 * 19 18 17 39 39 H 0.96704 * 116.99907 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8828 2.3964 1.2124 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4364 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3034 -4.8418 -0.0011 12 6 -0.0821 -4.7944 -0.0011 13 6 -0.7283 -3.5551 0.0000 14 7 -2.1156 -3.5055 -0.0005 15 6 -2.8930 -4.7472 -0.0016 16 6 -4.3863 -4.4140 -0.0013 17 6 -5.1982 -5.7109 -0.0032 18 6 -6.6914 -5.3776 -0.0022 19 6 -7.5034 -6.6744 -0.0047 20 6 -8.9742 -6.3462 -0.0044 21 8 -9.3359 -5.1934 -0.0029 22 8 -9.8824 -7.3347 -0.0069 23 7 -0.0360 -2.4314 -0.0041 24 1 -0.4850 0.8401 -0.0004 25 1 3.0884 -3.6554 -0.0001 26 1 1.8221 -5.7890 -0.0015 27 1 -0.6578 -5.7082 -0.0011 28 1 -2.5703 -2.6486 0.0007 29 1 -2.6506 -5.3285 0.8880 30 1 -2.6500 -5.3272 -0.8919 31 1 -4.6291 -3.8326 -0.8907 32 1 -4.6290 -3.8342 0.8892 33 1 -4.9554 -6.2903 -0.8939 34 1 -4.9555 -6.2926 0.8861 35 1 -6.9339 -4.7984 0.8887 36 1 -6.9344 -4.7956 -0.8913 37 1 -7.2608 -7.2533 -0.8959 38 1 -7.2605 -7.2569 0.8840 39 1 -10.8139 -7.0750 -0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:07 Heat of formation + Delta-G solvation = -100.278675 kcal Electronic energy + Delta-G solvation = -20083.646975 eV Core-core repulsion = 16796.254313 eV Total energy + Delta-G solvation = -3287.392662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21334 -40.11478 -37.78364 -37.11573 -35.95185 -35.01901 -32.70959 -32.07678 -30.37186 -27.59751 -27.13262 -24.24969 -23.38904 -22.22240 -21.95486 -21.45376 -19.24678 -18.99861 -17.97072 -17.35734 -17.35129 -16.62931 -16.48294 -16.41755 -15.95326 -15.18582 -15.03804 -14.74766 -14.34904 -14.20804 -13.93468 -13.56233 -13.27745 -12.94453 -12.85205 -12.71413 -12.59600 -12.53522 -12.22181 -12.08305 -12.07590 -11.89038 -11.69864 -11.56157 -11.44522 -11.25367 -10.62746 -9.82135 -9.43382 -8.27041 -8.22091 -6.47228 1.06549 1.24536 1.36073 1.41572 1.57003 1.57816 2.19459 2.25394 2.72224 2.93309 3.82082 3.95041 3.99153 4.07209 4.26928 4.34905 4.39318 4.51206 4.67290 4.69587 4.75956 4.81271 4.89412 4.98311 5.01919 5.02751 5.05407 5.12998 5.23031 5.39247 5.41482 5.48813 5.66407 5.73446 5.98267 6.09669 6.24334 6.58773 6.85074 6.97460 7.01522 7.23908 8.36042 8.52415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.002619 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.401424 B =10688.286892 C =11684.335601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.257 3.743 10 C -0.345 4.345 11 C -0.030 4.030 12 C -0.366 4.366 13 C 0.391 3.609 14 N -0.738 5.738 15 C 0.139 3.861 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.110 4.110 20 C 0.479 3.521 21 O -0.561 6.561 22 O -0.516 6.516 23 N -0.568 5.568 24 H 0.275 0.725 25 H 0.102 0.898 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.391 0.609 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 -12.487 0.004 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.129 3.871 10 C -0.368 4.368 11 C -0.055 4.055 12 C -0.392 4.392 13 C 0.150 3.850 14 N -0.373 5.373 15 C 0.015 3.985 16 C -0.160 4.160 17 C -0.143 4.143 18 C -0.145 4.145 19 C -0.147 4.147 20 C 0.324 3.676 21 O -0.452 6.452 22 O -0.329 6.329 23 N -0.291 5.291 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.225 0.775 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -15.852 -11.620 -0.002 19.655 hybrid contribution -0.024 0.626 0.004 0.626 sum -15.876 -10.994 0.002 19.311 Atomic orbital electron populations 1.70264 1.08802 1.28564 1.29922 1.26985 0.95764 1.04441 0.92553 0.85096 0.79416 0.76075 0.78675 1.17810 1.19192 1.19178 1.19965 0.94598 0.90495 1.45322 0.89545 1.18720 0.87726 0.93296 0.87334 1.21699 0.99002 0.93797 1.22263 1.21030 0.93754 0.97194 0.93488 1.20969 0.94972 0.96085 1.27136 1.19042 0.86122 0.90368 0.89477 1.44434 1.01492 1.08613 1.82805 1.21311 0.90676 0.85754 1.00730 1.21693 0.92415 0.99423 1.02490 1.21421 0.92567 0.96225 1.04057 1.21368 0.94244 0.96079 1.02773 1.21487 0.84557 1.00575 1.08120 1.24085 0.91062 0.82380 0.70104 1.90739 1.82849 1.23822 1.47824 1.84517 1.22605 1.40827 1.84997 1.68191 1.08035 1.26275 1.26571 0.91413 0.87949 0.85131 0.86132 0.77496 0.92670 0.92668 0.91864 0.91853 0.89993 0.89995 0.92243 0.92257 0.85320 0.85312 0.71378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.81 11.46 21.84 0.25 -41.56 16 2 C 0.02 1.27 5.50 85.29 0.47 1.74 16 3 Si 0.99 39.50 29.56 68.60 2.03 41.53 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 9 C 0.26 15.02 6.55 40.19 0.26 15.28 16 10 C -0.34 -17.97 9.83 22.87 0.22 -17.75 16 11 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 12 C -0.37 -16.66 9.34 22.73 0.21 -16.45 16 13 C 0.39 19.56 7.65 133.40 1.02 20.58 16 14 N -0.74 -29.95 5.72 -345.00 -1.97 -31.92 16 15 C 0.14 4.02 4.88 86.38 0.42 4.44 16 16 C -0.12 -2.68 5.33 30.60 0.16 -2.52 16 17 C -0.10 -1.54 5.21 30.60 0.16 -1.38 16 18 C -0.11 -1.62 4.50 30.60 0.14 -1.48 16 19 C -0.11 -1.14 5.81 29.85 0.17 -0.97 16 20 C 0.48 7.38 8.33 71.24 0.59 7.98 16 21 O -0.56 -13.47 16.74 21.96 0.37 -13.10 16 22 O -0.52 -5.41 13.42 -51.41 -0.69 -6.10 16 23 N -0.57 -32.91 7.89 -186.59 -1.47 -34.38 16 24 H 0.28 13.78 8.29 -92.71 -0.77 13.01 16 25 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 26 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 27 H 0.12 4.64 6.68 -2.91 -0.02 4.62 16 28 H 0.39 16.21 8.59 -92.71 -0.80 15.41 16 29 H 0.06 1.55 7.92 -2.39 -0.02 1.53 16 30 H 0.06 1.55 7.92 -2.39 -0.02 1.53 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16 36 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.42 1.36 9.10 -74.05 -0.67 0.68 16 Total: -1.00 -74.69 335.85 2.39 -72.31 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.40 Total: 31.51 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 4.28 Total: -18.28 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.20 Total: -107.86 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.32 Total: -19.20 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -74.69 2.39 -72.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.973 kcal (2) G-P(sol) polarization free energy of solvation -74.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds