Wall clock time and date at job start Tue Mar 31 2020 00:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48502 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47102 * 299.99020 * 3 2 1 6 6 H 1.48498 * 109.47462 * 59.99776 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.53692 * 57.38524 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46900 * 110.65967 * 142.05489 * 13 12 11 16 16 C 1.46900 * 111.00339 * 90.23953 * 15 13 12 17 17 C 1.50703 * 109.47335 * 179.97438 * 16 15 13 18 18 C 1.35476 * 125.50729 * 264.69179 * 17 16 15 19 19 C 1.39804 * 107.84326 * 179.88111 * 18 17 16 20 20 C 1.38000 * 106.96421 * 0.37497 * 19 18 17 21 21 C 1.46492 * 126.26310 * 179.76406 * 20 19 18 22 22 O 1.21623 * 119.99699 * 0.02562 * 21 20 19 23 23 O 1.34885 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.34961 * 125.50230 * 84.99759 * 17 16 15 25 25 H 0.97002 * 125.63791 * 0.02562 * 24 17 16 26 26 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 27 27 H 0.97007 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 29 29 H 1.08998 * 110.03049 * 98.37512 * 11 9 7 30 30 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 31 31 H 1.08997 * 110.03317 * 240.71381 * 12 11 9 32 32 H 1.00898 * 110.99998 * 326.28005 * 15 13 12 33 33 H 1.09002 * 109.46812 * 300.00257 * 16 15 13 34 34 H 1.09001 * 109.46940 * 59.99648 * 16 15 13 35 35 H 1.08001 * 126.08207 * 0.02562 * 18 17 16 36 36 H 1.07998 * 126.51932 * 180.16901 * 19 18 17 37 37 H 0.96701 * 116.99871 * 180.02562 * 23 21 20 38 38 H 1.09002 * 110.75856 * 274.93801 * 26 9 7 39 39 H 1.09006 * 110.75640 * 38.12787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5837 -2.5554 -0.8595 11 6 0.4562 -2.6636 1.3123 12 6 0.5408 -4.1520 1.6938 13 6 1.3883 -4.8420 0.6023 14 1 0.7433 -5.2794 -0.1599 15 7 2.2574 -5.8686 1.1928 16 6 1.5840 -7.1738 1.2246 17 6 2.5045 -8.1993 1.8349 18 6 3.3153 -9.0379 1.1459 19 6 4.0039 -9.8258 2.0729 20 6 3.5753 -9.4397 3.3266 21 6 4.0228 -9.9974 4.6052 22 8 4.8507 -10.8882 4.6235 23 8 3.5168 -9.5230 5.7620 24 7 2.6499 -8.4345 3.1558 25 1 2.1797 -7.9723 3.8673 26 6 2.2366 -3.6940 0.0005 27 1 -0.4851 0.8401 -0.0004 28 1 0.9001 -2.0513 2.0972 29 1 -0.5836 -2.3756 1.1574 30 1 1.0257 -4.2619 2.6638 31 1 -0.4582 -4.5871 1.7239 32 1 2.5630 -5.5968 2.1151 33 1 0.6754 -7.0993 1.8220 34 1 1.3274 -7.4751 0.2090 35 1 3.4141 -9.0873 0.0715 36 1 4.7304 -10.5932 1.8503 37 1 3.8430 -9.9221 6.5802 38 1 2.5501 -3.9362 -1.0149 39 1 3.1010 -3.4818 0.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:10 Heat of formation + Delta-G solvation = -63.333547 kcal Electronic energy + Delta-G solvation = -20716.546078 eV Core-core repulsion = 17430.755477 eV Total energy + Delta-G solvation = -3285.790601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67580 -39.88612 -37.91068 -36.38155 -34.58441 -32.23693 -31.37421 -30.10364 -28.09515 -27.16049 -25.15468 -23.53970 -22.86243 -20.86986 -20.40740 -19.66589 -19.10177 -18.80034 -17.76618 -16.37216 -16.07161 -15.69803 -15.34266 -14.75948 -14.40877 -14.26371 -13.95667 -13.78709 -13.56784 -12.89916 -12.80003 -12.52682 -12.31451 -12.11406 -11.91494 -11.60830 -11.21953 -11.06799 -11.00291 -10.70223 -10.49628 -10.19165 -9.91412 -9.58822 -9.24926 -9.16499 -8.74003 -8.49325 -8.38541 -8.09481 -6.00942 -4.02995 0.95316 2.39883 2.59370 2.93017 2.97144 3.29562 3.37949 3.42244 4.36315 4.46437 4.68503 4.83354 5.03991 5.11174 5.29542 5.38371 5.41185 5.55827 5.59400 5.76363 5.79098 6.01910 6.10893 6.12458 6.39341 6.52840 6.58770 6.67358 6.69001 6.79284 6.98334 7.06197 7.12783 7.30951 7.39999 7.52294 7.57644 7.69444 7.89671 8.02451 8.47674 9.00888 9.61274 11.08981 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031967 B = 0.002878 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.681934 B = 9727.859430 C = 9914.658946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.047 3.953 10 H 0.030 0.970 11 C -0.095 4.095 12 C -0.152 4.152 13 C 0.079 3.921 14 H 0.075 0.925 15 N -0.675 5.675 16 C 0.117 3.883 17 C 0.081 3.919 18 C -0.194 4.194 19 C -0.089 4.089 20 C -0.057 4.057 21 C 0.556 3.444 22 O -0.512 6.512 23 O -0.522 6.522 24 N -0.523 5.523 25 H 0.421 0.579 26 C -0.099 4.099 27 H 0.258 0.742 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.338 0.662 33 H 0.039 0.961 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.416 0.584 38 H 0.050 0.950 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -18.188 7.362 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.048 0.952 11 C -0.134 4.134 12 C -0.192 4.192 13 C -0.030 4.030 14 H 0.094 0.906 15 N -0.306 5.306 16 C -0.013 4.013 17 C -0.039 4.039 18 C -0.218 4.218 19 C -0.115 4.115 20 C -0.167 4.167 21 C 0.401 3.599 22 O -0.400 6.400 23 O -0.335 6.335 24 N -0.118 5.118 25 H 0.259 0.741 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.156 0.844 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.275 0.725 38 H 0.068 0.932 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.704 -18.221 6.578 19.560 hybrid contribution -0.283 1.085 1.777 2.101 sum 2.421 -17.136 8.355 19.217 Atomic orbital electron populations 1.69978 1.05887 1.26272 1.50876 1.24991 0.94827 0.99039 0.95220 0.86603 0.80268 0.84042 0.77497 1.19750 1.21084 1.21175 1.21206 0.92883 0.90467 1.50288 0.92562 1.19461 0.92552 0.91803 0.93397 0.95192 1.22041 1.00949 0.90310 1.00079 1.22982 0.98513 1.00151 0.97504 1.22665 0.93227 0.91209 0.95883 0.90645 1.60746 1.40724 1.01165 1.27956 1.20624 0.92141 0.87678 1.00839 1.20588 1.01312 0.99617 0.82366 1.20729 1.01209 0.99946 0.99923 1.21384 1.00319 1.00484 0.89349 1.19143 1.04355 1.01260 0.91979 1.19524 0.78161 0.79388 0.82798 1.90953 1.32024 1.29606 1.87461 1.84585 1.67021 1.64451 1.17435 1.41833 1.33007 1.29179 1.07789 0.74106 1.22541 0.98485 0.93904 0.98762 0.93215 0.93109 0.92864 0.93570 0.93699 0.84410 0.94309 0.88208 0.83254 0.83132 0.72472 0.93156 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 12.63 55.43 0.70 -24.67 16 2 C 0.06 1.66 5.35 -17.82 -0.10 1.57 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -13.78 8.36 -34.44 -0.29 -14.06 16 8 H 0.06 1.52 7.77 -52.48 -0.41 1.11 16 9 C 0.05 1.12 2.73 -90.11 -0.25 0.88 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.10 -2.12 5.60 -25.61 -0.14 -2.26 16 12 C -0.15 -2.59 6.51 -25.51 -0.17 -2.76 16 13 C 0.08 1.27 3.19 -65.94 -0.21 1.06 16 14 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 15 N -0.68 -9.07 6.35 -106.11 -0.67 -9.74 16 16 C 0.12 1.25 6.08 -4.97 -0.03 1.22 16 17 C 0.08 0.85 6.62 -82.20 -0.54 0.31 16 18 C -0.19 -2.07 10.71 -39.98 -0.43 -2.50 16 19 C -0.09 -0.97 10.67 -39.08 -0.42 -1.39 16 20 C -0.06 -0.63 7.10 -81.99 -0.58 -1.21 16 21 C 0.56 6.01 8.30 34.06 0.28 6.29 16 22 O -0.51 -6.84 17.67 -19.36 -0.34 -7.19 16 23 O -0.52 -4.00 13.44 -41.00 -0.55 -4.55 16 24 N -0.52 -5.10 6.07 -5.82 -0.04 -5.14 16 25 H 0.42 3.33 8.96 -40.82 -0.37 2.96 16 26 C -0.10 -1.96 5.96 -24.73 -0.15 -2.11 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.21 7.83 -51.93 -0.41 0.81 16 29 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 30 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.34 4.46 8.07 -39.29 -0.32 4.14 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.42 1.32 9.11 45.56 0.42 1.73 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -31.15 332.45 -8.73 -39.89 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.81 Total: 5.22 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.01 Total: -14.96 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.01 Total: -39.55 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.89 Total: -11.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.15 -8.73 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.447 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds