Wall clock time and date at job start Tue Mar 31 2020 00:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48505 * 109.46930 * 270.00057 * 3 2 1 5 5 H 1.48496 * 109.47045 * 29.99702 * 3 2 1 6 6 H 1.48495 * 109.47143 * 149.99749 * 3 2 1 7 7 C 1.37878 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99988 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46964 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47024 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99770 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00256 * 180.02562 * 12 11 10 15 15 C 1.38644 * 120.00234 * 180.02562 * 14 12 11 16 16 N 1.31194 * 125.66804 * 179.97438 * 15 14 12 17 17 C 1.34042 * 108.50288 * 179.97438 * 16 15 14 18 18 C 1.34599 * 107.80011 * 0.03210 * 17 16 15 19 19 O 1.34293 * 107.43680 * 359.96708 * 18 17 16 20 20 C 1.50737 * 124.32098 * 179.89507 * 18 17 16 21 21 C 1.53378 * 108.44841 * 343.52540 * 20 18 17 22 22 C 1.53125 * 109.43906 * 49.68429 * 21 20 18 23 23 C 1.50817 * 128.01773 * 180.09357 * 17 16 15 24 24 H 0.96993 * 119.99531 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47538 * 59.99591 * 9 7 2 26 26 H 1.09004 * 109.47235 * 299.99751 * 9 7 2 27 27 H 1.08999 * 109.47029 * 60.00264 * 10 9 7 28 28 H 1.08997 * 109.47228 * 299.99514 * 10 9 7 29 29 H 1.08999 * 109.46810 * 60.00401 * 11 10 9 30 30 H 1.08997 * 109.46973 * 299.99942 * 11 10 9 31 31 H 0.96995 * 119.99326 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.67650 * 223.77206 * 20 18 17 33 33 H 1.09004 * 109.67361 * 103.27289 * 20 18 17 34 34 H 1.08999 * 109.47133 * 169.68046 * 21 20 18 35 35 H 1.09002 * 109.47219 * 289.69553 * 21 20 18 36 36 H 1.09002 * 109.46678 * 50.13196 * 22 21 20 37 37 H 1.09000 * 109.46799 * 170.11836 * 22 21 20 38 38 H 1.09002 * 109.64067 * 43.65860 * 23 17 16 39 39 H 1.09001 * 109.81712 * 283.13014 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5516 -2.6367 -0.0001 12 6 6.0539 -4.0575 0.0004 13 8 5.2657 -4.9792 0.0003 14 7 7.3790 -4.3038 0.0010 15 6 7.8411 -5.6110 0.0009 16 7 9.1009 -5.9769 0.0009 17 6 9.1548 -7.3163 0.0014 18 6 7.8909 -7.7790 0.0010 19 8 7.0726 -6.7141 0.0009 20 6 7.5207 -9.2402 -0.0010 21 6 8.7539 -10.0527 -0.4149 22 6 9.9590 -9.6113 0.4204 23 6 10.3794 -8.1966 0.0036 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8753 -0.6798 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8897 29 1 5.9149 -2.1229 0.8899 30 1 5.9149 -2.1228 -0.8901 31 1 8.0092 -3.5665 0.0007 32 1 6.7120 -9.4130 -0.7112 33 1 7.2023 -9.5394 0.9976 34 1 8.5638 -11.1128 -0.2468 35 1 8.9625 -9.8838 -1.4714 36 1 9.6894 -9.6139 1.4765 37 1 10.7874 -10.3001 0.2552 38 1 11.1093 -7.8072 0.7133 39 1 10.8170 -8.2235 -0.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653624458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:25 Heat of formation + Delta-G solvation = -32.919234 kcal Electronic energy + Delta-G solvation = -20741.790303 eV Core-core repulsion = 17457.318565 eV Total energy + Delta-G solvation = -3284.471738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.54724 -39.98531 -37.52172 -35.51170 -34.49107 -34.28518 -32.16221 -30.77626 -29.43370 -28.30411 -24.73972 -23.59511 -22.95357 -22.21341 -21.14348 -20.06391 -19.39672 -18.09418 -17.22079 -17.08041 -16.58194 -16.29666 -15.69754 -15.24949 -14.43369 -14.30704 -13.88474 -13.84581 -13.70186 -13.60408 -13.15063 -12.70377 -12.61294 -12.10725 -11.92200 -11.67316 -11.42118 -11.29122 -11.16478 -11.09690 -10.84602 -10.51026 -10.47149 -10.29470 -9.97866 -9.78650 -9.67165 -9.19904 -8.54362 -8.16209 -6.03897 -4.02366 1.27710 1.82499 2.19949 2.85077 2.91798 3.29411 3.36872 3.38876 4.18684 4.39703 4.43774 4.44032 4.55321 4.60439 4.83252 5.09428 5.11661 5.17525 5.24242 5.28823 5.34784 5.39815 5.41716 5.55640 5.55870 5.60672 5.87231 5.89955 5.95882 6.00879 6.27722 6.43752 6.55423 6.74757 6.82640 7.28582 7.37558 7.72930 7.77995 7.88169 8.54755 9.02341 9.57579 11.09698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051179 B = 0.002747 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.966222 B =10191.085688 C =10674.015451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.090 4.090 11 C -0.133 4.133 12 C 0.510 3.490 13 O -0.489 6.489 14 N -0.620 5.620 15 C 0.422 3.578 16 N -0.503 5.503 17 C 0.004 3.996 18 C -0.068 4.068 19 O -0.173 6.173 20 C -0.028 4.028 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.034 4.034 24 H 0.263 0.737 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.437 0.563 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.282 -16.970 0.013 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.128 4.128 11 C -0.173 4.173 12 C 0.298 3.702 13 O -0.358 6.358 14 N -0.281 5.281 15 C 0.126 3.874 16 N -0.241 5.241 17 C -0.117 4.117 18 C -0.123 4.123 19 O -0.057 6.057 20 C -0.065 4.065 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.278 0.722 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.883 -17.062 0.016 28.544 hybrid contribution 0.042 1.097 -0.018 1.098 sum 22.925 -15.965 -0.002 27.936 Atomic orbital electron populations 1.69924 1.06323 1.26864 1.51103 1.25058 0.94762 0.99193 0.94629 0.86754 0.80306 0.83593 0.78442 1.20315 1.21420 1.19007 1.21132 0.89414 0.94598 1.50746 0.90912 1.19602 0.97457 0.91739 0.96320 1.21347 0.88420 1.00135 1.02912 1.21935 1.01125 0.89467 1.04812 1.21846 0.79803 0.94010 0.74525 1.90812 1.54000 1.46353 1.44612 1.43011 1.09675 1.01428 1.73971 1.21600 0.83154 0.83165 0.99461 1.70412 1.15641 1.12903 1.25102 1.21266 0.95481 0.89096 1.05815 1.23023 0.88859 0.89667 1.10734 1.84493 1.37071 1.13547 1.70630 1.20127 0.99349 0.83594 1.03461 1.21624 0.93623 0.99418 1.00707 1.21660 0.98256 0.95579 1.00480 1.19994 0.92524 0.91852 1.02810 0.92734 0.96472 0.96895 0.91791 0.91759 0.88226 0.88220 0.72202 0.89548 0.89445 0.90079 0.91037 0.91235 0.90480 0.89881 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 11 C -0.13 -1.88 5.70 -27.88 -0.16 -2.04 16 12 C 0.51 7.77 7.79 -10.99 -0.09 7.68 16 13 O -0.49 -9.58 14.74 -16.30 -0.24 -9.82 16 14 N -0.62 -7.86 5.39 -12.95 -0.07 -7.93 16 15 C 0.42 6.31 8.89 -86.41 -0.77 5.55 16 16 N -0.50 -7.12 11.33 -10.46 -0.12 -7.24 16 17 C 0.00 0.05 6.98 -82.86 -0.58 -0.52 16 18 C -0.07 -0.88 7.24 -35.58 -0.26 -1.14 16 19 O -0.17 -2.82 9.08 -16.51 -0.15 -2.97 16 20 C -0.03 -0.24 6.30 -27.67 -0.17 -0.42 16 21 C -0.12 -0.69 5.91 -26.47 -0.16 -0.85 16 22 C -0.12 -0.71 5.90 -26.48 -0.16 -0.87 16 23 C -0.03 -0.28 6.30 -27.64 -0.17 -0.45 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 28 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.44 3.85 8.82 -40.82 -0.36 3.49 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -35.85 324.79 -8.53 -44.38 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.78 Total: -1.88 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.17 Total: -8.86 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.59 Total: -42.48 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.39 Total: -12.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.85 -8.53 -44.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653624458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.460 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds