Wall clock time and date at job start Tue Mar 31 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48505 * 109.46930 * 270.00057 * 3 2 1 5 5 H 1.48496 * 109.47045 * 29.99702 * 3 2 1 6 6 H 1.48495 * 109.47143 * 149.99749 * 3 2 1 7 7 C 1.37878 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99988 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46964 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47024 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99770 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00256 * 180.02562 * 12 11 10 15 15 C 1.38644 * 120.00234 * 180.02562 * 14 12 11 16 16 N 1.31194 * 125.66804 * 179.97438 * 15 14 12 17 17 C 1.34042 * 108.50288 * 179.97438 * 16 15 14 18 18 C 1.34599 * 107.80011 * 0.03210 * 17 16 15 19 19 O 1.34293 * 107.43680 * 359.96708 * 18 17 16 20 20 C 1.50737 * 124.32098 * 179.89507 * 18 17 16 21 21 C 1.53378 * 108.44841 * 343.52540 * 20 18 17 22 22 C 1.53125 * 109.43906 * 49.68429 * 21 20 18 23 23 C 1.50817 * 128.01773 * 180.09357 * 17 16 15 24 24 H 0.96993 * 119.99531 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47538 * 59.99591 * 9 7 2 26 26 H 1.09004 * 109.47235 * 299.99751 * 9 7 2 27 27 H 1.08999 * 109.47029 * 60.00264 * 10 9 7 28 28 H 1.08997 * 109.47228 * 299.99514 * 10 9 7 29 29 H 1.08999 * 109.46810 * 60.00401 * 11 10 9 30 30 H 1.08997 * 109.46973 * 299.99942 * 11 10 9 31 31 H 0.96995 * 119.99326 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.67650 * 223.77206 * 20 18 17 33 33 H 1.09004 * 109.67361 * 103.27289 * 20 18 17 34 34 H 1.08999 * 109.47133 * 169.68046 * 21 20 18 35 35 H 1.09002 * 109.47219 * 289.69553 * 21 20 18 36 36 H 1.09002 * 109.46678 * 50.13196 * 22 21 20 37 37 H 1.09000 * 109.46799 * 170.11836 * 22 21 20 38 38 H 1.09002 * 109.64067 * 43.65860 * 23 17 16 39 39 H 1.09001 * 109.81712 * 283.13014 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6367 -0.0001 11 6 5.5516 -2.6367 -0.0001 12 6 6.0539 -4.0575 0.0004 13 8 5.2657 -4.9792 0.0003 14 7 7.3790 -4.3038 0.0010 15 6 7.8411 -5.6110 0.0009 16 7 9.1009 -5.9769 0.0009 17 6 9.1548 -7.3163 0.0014 18 6 7.8909 -7.7790 0.0010 19 8 7.0726 -6.7141 0.0009 20 6 7.5207 -9.2402 -0.0010 21 6 8.7539 -10.0527 -0.4149 22 6 9.9590 -9.6113 0.4204 23 6 10.3794 -8.1966 0.0036 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8753 -0.6798 -0.8895 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8897 29 1 5.9149 -2.1229 0.8899 30 1 5.9149 -2.1228 -0.8901 31 1 8.0092 -3.5665 0.0007 32 1 6.7120 -9.4130 -0.7112 33 1 7.2023 -9.5394 0.9976 34 1 8.5638 -11.1128 -0.2468 35 1 8.9625 -9.8838 -1.4714 36 1 9.6894 -9.6139 1.4765 37 1 10.7874 -10.3001 0.2552 38 1 11.1093 -7.8072 0.7133 39 1 10.8170 -8.2235 -0.9944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653624458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:24 Heat of formation + Delta-G solvation = -58.629775 kcal Electronic energy + Delta-G solvation = -20742.905196 eV Core-core repulsion = 17457.318565 eV Total energy + Delta-G solvation = -3285.586630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.57373 -41.20010 -38.21736 -36.66418 -36.19167 -35.31340 -34.16684 -31.43975 -30.76386 -29.54901 -26.24539 -24.52329 -23.95260 -23.31341 -22.29520 -21.58695 -20.28394 -19.26969 -18.79704 -18.26636 -18.10531 -17.20122 -16.89242 -16.31152 -15.99140 -15.33679 -15.26095 -14.87717 -14.75711 -14.51221 -14.28777 -13.93151 -13.84720 -13.38025 -13.23550 -12.81968 -12.77257 -12.51760 -12.11097 -11.90452 -11.86750 -11.79213 -11.75513 -11.51990 -11.39282 -11.37041 -11.32805 -11.25855 -10.74240 -9.14322 -8.27123 -6.32991 0.20996 0.84130 1.14696 1.40171 1.43616 1.55434 1.76164 1.91674 2.39958 3.08369 3.28265 3.61109 3.77435 3.84541 3.95594 3.99810 4.10061 4.20264 4.37294 4.46590 4.53513 4.55256 4.69360 4.87123 4.87627 4.92235 4.97284 4.98041 5.02391 5.09513 5.16947 5.22379 5.36408 5.41572 5.54440 5.59295 5.67549 5.79888 6.30720 6.65088 6.76220 6.82024 7.31399 8.90560 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051179 B = 0.002747 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.966222 B =10191.085688 C =10674.015451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.231 1.231 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.010 4.010 10 C -0.085 4.085 11 C -0.119 4.119 12 C 0.516 3.484 13 O -0.543 6.543 14 N -0.600 5.600 15 C 0.394 3.606 16 N -0.506 5.506 17 C -0.006 4.006 18 C -0.083 4.083 19 O -0.205 6.205 20 C -0.032 4.032 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.034 4.034 24 H 0.266 0.734 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.455 0.545 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.118 -16.406 0.021 31.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.201 4.201 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.154 1.154 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.047 4.047 10 C -0.123 4.123 11 C -0.158 4.158 12 C 0.305 3.695 13 O -0.416 6.416 14 N -0.262 5.262 15 C 0.099 3.901 16 N -0.244 5.244 17 C -0.127 4.127 18 C -0.137 4.137 19 O -0.091 6.091 20 C -0.070 4.070 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.300 0.700 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.787 -16.504 0.024 31.463 hybrid contribution -1.204 0.778 -0.023 1.433 sum 25.583 -15.726 0.002 30.030 Atomic orbital electron populations 1.70115 1.08775 1.28272 1.52747 1.26224 0.95745 1.04226 0.93897 0.85488 0.79789 0.76926 0.79373 1.18960 1.21517 1.15418 1.21564 0.92823 0.92782 1.50665 0.96312 1.19549 0.93354 0.94004 0.97783 1.21112 0.92832 0.97659 1.00712 1.21800 0.96547 0.89191 1.08282 1.21995 0.80114 0.93907 0.73446 1.90803 1.55578 1.47900 1.47367 1.42724 1.09199 1.01441 1.72873 1.21982 0.83483 0.83595 1.01010 1.70426 1.15133 1.14088 1.24757 1.22020 0.96911 0.88776 1.04945 1.23938 0.89084 0.90560 1.10134 1.84484 1.38731 1.14803 1.71067 1.20421 1.00942 0.81582 1.04018 1.21663 0.92231 1.00243 1.00644 1.21683 0.99071 0.94553 1.00194 1.20220 0.90881 0.92356 1.03743 0.92556 0.94665 0.94791 0.94207 0.94204 0.84663 0.84597 0.70010 0.89758 0.88629 0.87452 0.91029 0.91438 0.87658 0.89304 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.61 13.96 21.45 0.30 -61.31 16 2 C -0.01 -0.31 5.47 84.65 0.46 0.16 16 3 Si 0.96 43.13 27.47 68.60 1.88 45.01 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.23 -9.07 6.54 99.48 0.65 -8.42 16 7 C -0.54 -31.91 9.66 25.60 0.25 -31.66 16 8 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.08 -3.34 4.44 30.60 0.14 -3.20 16 11 C -0.12 -3.04 5.70 29.85 0.17 -2.87 16 12 C 0.52 15.38 7.79 87.66 0.68 16.06 16 13 O -0.54 -22.08 14.74 17.87 0.26 -21.82 16 14 N -0.60 -14.55 5.39 -423.34 -2.28 -16.83 16 15 C 0.39 11.79 8.89 178.88 1.59 13.37 16 16 N -0.51 -13.99 11.33 -301.07 -3.41 -17.40 16 17 C -0.01 -0.13 6.98 41.42 0.29 0.16 16 18 C -0.08 -2.15 7.24 24.86 0.18 -1.97 16 19 O -0.21 -6.92 9.08 17.12 0.16 -6.76 16 20 C -0.03 -0.54 6.30 29.99 0.19 -0.35 16 21 C -0.11 -1.05 5.91 30.76 0.18 -0.87 16 22 C -0.12 -1.04 5.90 30.75 0.18 -0.86 16 23 C -0.03 -0.49 6.30 30.00 0.19 -0.30 16 24 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 25 H 0.04 1.46 7.20 -2.38 -0.02 1.44 16 26 H 0.03 1.39 7.57 -2.38 -0.02 1.37 16 27 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 28 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 29 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.45 6.94 8.82 -92.71 -0.82 6.12 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -83.73 324.79 1.71 -82.02 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.19 Total: 9.73 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.62 Total: -12.63 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.39 Total: -95.54 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.42 Total: -28.58 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Total: -83.73 1.71 -82.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653624458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.389 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds