Wall clock time and date at job start Mon Mar 30 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48493 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46748 * 300.00173 * 3 2 1 6 6 H 1.48502 * 109.46990 * 59.99891 * 3 2 1 7 7 C 1.38810 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99601 * 196.91423 * 7 2 1 9 9 N 1.36936 * 120.00525 * 16.91622 * 7 2 1 10 10 C 1.47150 * 120.98169 * 26.25702 * 9 7 2 11 11 C 1.53292 * 108.38260 * 129.44333 * 10 9 7 12 12 O 1.42961 * 109.22420 * 52.30591 * 11 10 9 13 13 C 1.42964 * 114.16275 * 297.41456 * 12 11 10 14 14 H 1.08992 * 109.51650 * 302.65801 * 13 12 11 15 15 C 1.53005 * 109.51059 * 182.50350 * 13 12 11 16 16 N 1.46503 * 109.46933 * 65.25685 * 15 13 12 17 17 C 1.34779 * 120.00027 * 179.97438 * 16 15 13 18 18 O 1.21611 * 119.99799 * 359.97438 * 17 16 15 19 19 C 1.43193 * 120.00136 * 180.02562 * 17 16 15 20 20 C 9.35415 * 126.04150 * 207.15647 * 7 1 2 21 21 C 9.60226 * 155.89448 * 229.87307 * 9 1 2 22 22 C 1.53002 * 117.50022 * 73.75911 * 21 20 19 23 23 C 1.53001 * 117.50302 * 5.09817 * 21 20 19 24 24 C 1.47148 * 120.98132 * 206.23534 * 9 7 2 25 25 H 0.96998 * 119.99633 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.68400 * 249.16688 * 10 9 7 27 27 H 1.09006 * 109.67842 * 9.68599 * 10 9 7 28 28 H 1.09007 * 109.51157 * 172.22733 * 11 10 9 29 29 H 1.08998 * 109.51689 * 292.37547 * 11 10 9 30 30 H 1.08998 * 109.47277 * 185.25239 * 15 13 12 31 31 H 1.09003 * 109.47184 * 305.25935 * 15 13 12 32 32 H 0.97005 * 120.00001 * 0.02562 * 16 15 13 33 33 H 1.09006 * 115.54851 * 219.42449 * 21 20 19 34 34 H 1.09001 * 117.49563 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.50176 * 145.01872 * 22 21 20 36 36 H 1.09001 * 117.49631 * 214.97901 * 23 21 20 37 37 H 1.08993 * 117.49531 * 359.97272 * 23 21 20 38 38 H 1.09001 * 109.68206 * 110.83253 * 24 9 7 39 39 H 1.09002 * 109.71646 * 350.29614 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2716 9 7 1.3700 -2.3623 -0.3461 10 6 0.1978 -2.3446 -1.2356 11 6 0.4257 -3.3656 -2.3560 12 8 0.7662 -4.6288 -1.7796 13 6 1.9822 -4.6203 -1.0278 14 1 2.8015 -4.2861 -1.6643 15 6 2.2754 -6.0315 -0.5144 16 7 2.5347 -6.9202 -1.6498 17 6 2.8187 -8.2203 -1.4368 18 8 2.8602 -8.6557 -0.3021 19 6 3.0727 -9.0889 -2.5466 20 6 3.2795 -9.8013 -3.4566 21 6 3.5399 -10.6942 -4.5975 22 6 3.0178 -10.2595 -5.9684 23 6 2.3411 -11.4116 -5.2213 24 6 1.8340 -3.6635 0.1607 25 1 -0.4849 0.8401 -0.0004 26 1 -0.6954 -2.6121 -0.6712 27 1 0.0771 -1.3495 -1.6639 28 1 -0.4852 -3.4682 -2.9459 29 1 1.2393 -3.0269 -2.9974 30 1 3.1503 -6.0073 0.1352 31 1 1.4164 -6.3998 0.0465 32 1 2.5027 -6.5726 -2.5549 33 1 4.4880 -11.2313 -4.5672 34 1 2.4810 -9.3126 -6.0253 35 1 3.6220 -10.5111 -6.8400 36 1 2.5006 -12.4205 -5.6017 37 1 1.3597 -11.2227 -4.7866 38 1 1.1055 -4.0639 0.8657 39 1 2.7970 -3.5426 0.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666703460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:52 Heat of formation + Delta-G solvation = 21.373771 kcal Electronic energy + Delta-G solvation = -20674.429136 eV Core-core repulsion = 17392.311720 eV Total energy + Delta-G solvation = -3282.117416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.71994 -38.46290 -37.94530 -34.97095 -34.32756 -32.97848 -31.54646 -30.66605 -27.70329 -26.07337 -24.43372 -23.21728 -22.87342 -22.24563 -21.47264 -19.89293 -18.69859 -17.03536 -16.83581 -16.21698 -16.06344 -15.41997 -15.07086 -14.96219 -14.41789 -14.38250 -13.82104 -13.30184 -13.14953 -12.93351 -12.80545 -12.56246 -12.32230 -11.99922 -11.64439 -11.56441 -11.16230 -10.90765 -10.76074 -10.50665 -10.44262 -10.34866 -10.27666 -10.01809 -9.99731 -9.70423 -9.12049 -9.08350 -8.58262 -6.79703 -5.87946 -3.31747 1.41226 1.99375 2.96264 3.30820 3.31425 3.39504 3.41650 3.63236 3.93362 4.20050 4.33471 4.39966 4.50184 4.66992 5.05572 5.16374 5.18189 5.29634 5.39689 5.43620 5.48369 5.58445 5.62117 5.75037 5.80058 5.98314 6.10474 6.22849 6.32877 6.40652 6.44671 6.71473 7.02195 7.06272 7.41822 7.48116 7.67677 7.80828 8.08426 8.29516 9.07592 9.70236 10.26853 11.20249 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.002966 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.770671 B = 9438.775579 C = 9749.525297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.706 5.706 17 C 0.630 3.370 18 O -0.528 6.528 19 C -0.209 4.209 20 C -0.061 4.061 21 C -0.065 4.065 22 C -0.160 4.160 23 C -0.160 4.160 24 C 0.122 3.878 25 H 0.255 0.745 26 H 0.029 0.971 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.031 0.969 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -17.162 -11.700 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.356 5.356 17 C 0.416 3.584 18 O -0.406 6.406 19 C -0.212 4.212 20 C -0.064 4.064 21 C -0.082 4.082 22 C -0.197 4.197 23 C -0.197 4.197 24 C -0.006 4.006 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.241 0.759 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.049 0.951 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.824 -17.419 -10.855 21.084 hybrid contribution 0.484 1.352 -0.347 1.477 sum 5.308 -16.067 -11.202 20.293 Atomic orbital electron populations 1.70048 1.05285 1.25597 1.53734 1.25059 0.95361 0.98527 1.00743 0.86176 0.79312 0.83652 0.77362 1.20192 1.21476 1.21592 1.19241 0.92673 0.84434 1.42094 0.91253 1.44078 1.33606 1.00996 1.53113 1.21451 0.89149 0.98338 0.89740 1.23332 0.99048 0.84829 0.96606 1.87792 1.41204 1.32655 1.69304 1.22821 0.87641 0.93641 0.95469 0.92201 1.21531 1.02052 0.87767 0.87995 1.45818 1.70080 1.08226 1.11451 1.14653 0.77354 0.81051 0.85338 1.90859 1.51724 1.75704 1.22290 1.20716 1.04394 1.00075 0.96042 1.21306 0.94805 0.95962 0.94293 1.18893 1.00372 1.00263 0.88699 1.23138 1.03213 0.99983 0.93381 1.23122 0.96448 0.97778 1.02380 1.21440 0.99066 0.87190 0.92856 0.93518 0.95314 0.88728 0.90003 0.94071 0.89613 0.90161 0.75850 0.84721 0.87940 0.87375 0.87387 0.88024 0.95103 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.59 -14.68 3.05 -171.83 -0.52 -15.20 16 10 C 0.14 3.26 5.45 -3.54 -0.02 3.24 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.21 10.33 -35.23 -0.36 -7.57 16 13 C 0.06 1.10 2.81 -26.58 -0.07 1.03 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.95 5.34 -4.04 -0.02 1.93 16 16 N -0.71 -9.76 5.50 -62.76 -0.35 -10.11 16 17 C 0.63 9.63 7.65 -14.34 -0.11 9.52 16 18 O -0.53 -9.82 17.08 5.27 0.09 -9.73 16 19 C -0.21 -2.80 13.61 -38.84 -0.53 -3.33 16 20 C -0.06 -0.68 13.47 -37.12 -0.50 -1.18 16 21 C -0.06 -0.47 6.21 -93.41 -0.58 -1.05 16 22 C -0.16 -0.91 10.21 -26.69 -0.27 -1.18 16 23 C -0.16 -0.94 10.21 -26.69 -0.27 -1.21 16 24 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.41 4.95 8.44 -40.82 -0.34 4.60 16 33 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -32.02 337.03 -8.55 -40.57 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.70 Total: 1.69 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.37 Total: 4.20 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.25 Total: -50.44 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.27 Total: -17.30 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.02 -8.55 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666703460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.942 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds