Wall clock time and date at job start Mon Mar 30 2020 23:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48493 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46748 * 300.00173 * 3 2 1 6 6 H 1.48502 * 109.46990 * 59.99891 * 3 2 1 7 7 C 1.38810 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99601 * 196.91423 * 7 2 1 9 9 N 1.36936 * 120.00525 * 16.91622 * 7 2 1 10 10 C 1.47150 * 120.98169 * 26.25702 * 9 7 2 11 11 C 1.53292 * 108.38260 * 129.44333 * 10 9 7 12 12 O 1.42961 * 109.22420 * 52.30591 * 11 10 9 13 13 C 1.42964 * 114.16275 * 297.41456 * 12 11 10 14 14 H 1.08992 * 109.51650 * 302.65801 * 13 12 11 15 15 C 1.53005 * 109.51059 * 182.50350 * 13 12 11 16 16 N 1.46503 * 109.46933 * 65.25685 * 15 13 12 17 17 C 1.34779 * 120.00027 * 179.97438 * 16 15 13 18 18 O 1.21611 * 119.99799 * 359.97438 * 17 16 15 19 19 C 1.43193 * 120.00136 * 180.02562 * 17 16 15 20 20 C 9.35415 * 126.04150 * 207.15647 * 7 1 2 21 21 C 9.60226 * 155.89448 * 229.87307 * 9 1 2 22 22 C 1.53002 * 117.50022 * 73.75911 * 21 20 19 23 23 C 1.53001 * 117.50302 * 5.09817 * 21 20 19 24 24 C 1.47148 * 120.98132 * 206.23534 * 9 7 2 25 25 H 0.96998 * 119.99633 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.68400 * 249.16688 * 10 9 7 27 27 H 1.09006 * 109.67842 * 9.68599 * 10 9 7 28 28 H 1.09007 * 109.51157 * 172.22733 * 11 10 9 29 29 H 1.08998 * 109.51689 * 292.37547 * 11 10 9 30 30 H 1.08998 * 109.47277 * 185.25239 * 15 13 12 31 31 H 1.09003 * 109.47184 * 305.25935 * 15 13 12 32 32 H 0.97005 * 120.00001 * 0.02562 * 16 15 13 33 33 H 1.09006 * 115.54851 * 219.42449 * 21 20 19 34 34 H 1.09001 * 117.49563 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.50176 * 145.01872 * 22 21 20 36 36 H 1.09001 * 117.49631 * 214.97901 * 23 21 20 37 37 H 1.08993 * 117.49531 * 359.97272 * 23 21 20 38 38 H 1.09001 * 109.68206 * 110.83253 * 24 9 7 39 39 H 1.09002 * 109.71646 * 350.29614 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2226 0.2716 9 7 1.3700 -2.3623 -0.3461 10 6 0.1978 -2.3446 -1.2356 11 6 0.4257 -3.3656 -2.3560 12 8 0.7662 -4.6288 -1.7796 13 6 1.9822 -4.6203 -1.0278 14 1 2.8015 -4.2861 -1.6643 15 6 2.2754 -6.0315 -0.5144 16 7 2.5347 -6.9202 -1.6498 17 6 2.8187 -8.2203 -1.4368 18 8 2.8602 -8.6557 -0.3021 19 6 3.0727 -9.0889 -2.5466 20 6 3.2795 -9.8013 -3.4566 21 6 3.5399 -10.6942 -4.5975 22 6 3.0178 -10.2595 -5.9684 23 6 2.3411 -11.4116 -5.2213 24 6 1.8340 -3.6635 0.1607 25 1 -0.4849 0.8401 -0.0004 26 1 -0.6954 -2.6121 -0.6712 27 1 0.0771 -1.3495 -1.6639 28 1 -0.4852 -3.4682 -2.9459 29 1 1.2393 -3.0269 -2.9974 30 1 3.1503 -6.0073 0.1352 31 1 1.4164 -6.3998 0.0465 32 1 2.5027 -6.5726 -2.5549 33 1 4.4880 -11.2313 -4.5672 34 1 2.4810 -9.3126 -6.0253 35 1 3.6220 -10.5111 -6.8400 36 1 2.5006 -12.4205 -5.6017 37 1 1.3597 -11.2227 -4.7866 38 1 1.1055 -4.0639 0.8657 39 1 2.7970 -3.5426 0.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666703460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:51 Heat of formation + Delta-G solvation = 0.112796 kcal Electronic energy + Delta-G solvation = -20675.351081 eV Core-core repulsion = 17392.311720 eV Total energy + Delta-G solvation = -3283.039361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98070 -39.99072 -38.48883 -36.56381 -35.87356 -33.94683 -33.32586 -32.28069 -29.34932 -27.61341 -25.56003 -24.91241 -23.54729 -23.28373 -22.62846 -21.54676 -19.84889 -18.86891 -17.62556 -17.58528 -17.38571 -16.90810 -16.32422 -16.10444 -16.01960 -15.58733 -15.48788 -15.04894 -14.67816 -14.51549 -13.88155 -13.51494 -13.28656 -13.11635 -13.00604 -12.73066 -12.52314 -12.41218 -12.33234 -12.18455 -12.07285 -11.89393 -11.65054 -11.32926 -11.11057 -10.82586 -10.73068 -10.56850 -10.28686 -8.77448 -7.92575 -5.40026 0.39507 1.09276 1.45702 1.47655 1.58337 1.91987 2.33784 2.46767 2.73602 2.99117 3.12317 3.22893 3.46342 3.83517 3.90812 4.00604 4.03331 4.06224 4.22467 4.42753 4.47718 4.49608 4.58916 4.70391 4.73722 4.78539 4.87764 4.97993 5.03228 5.10137 5.17940 5.22650 5.22883 5.54416 5.60369 6.11352 6.23191 6.28922 6.32162 6.94229 7.04833 7.72723 8.26237 9.13788 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.002966 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.770671 B = 9438.775579 C = 9749.525297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.079 3.921 14 H 0.072 0.928 15 C 0.139 3.861 16 N -0.695 5.695 17 C 0.634 3.366 18 O -0.570 6.570 19 C -0.266 4.266 20 C -0.023 4.023 21 C -0.089 4.089 22 C -0.149 4.149 23 C -0.154 4.154 24 C 0.117 3.883 25 H 0.252 0.748 26 H -0.001 1.001 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.477 -18.531 -13.910 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.311 6.311 13 C 0.019 3.981 14 H 0.090 0.910 15 C 0.015 3.985 16 N -0.345 5.345 17 C 0.422 3.578 18 O -0.451 6.451 19 C -0.268 4.268 20 C -0.026 4.026 21 C -0.106 4.106 22 C -0.186 4.186 23 C -0.191 4.191 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.288 -18.804 -13.096 23.762 hybrid contribution 0.025 1.690 0.309 1.718 sum 6.313 -17.114 -12.787 22.277 Atomic orbital electron populations 1.70202 1.06756 1.26025 1.55249 1.25844 0.96109 1.01676 1.01036 0.85143 0.78622 0.79465 0.76811 1.18895 1.21412 1.22079 1.19592 0.93053 0.85495 1.41320 0.90855 1.44360 1.33689 1.01916 1.53817 1.21320 0.87955 0.98425 0.90623 1.23171 1.00791 0.83526 0.94882 1.87808 1.41846 1.32145 1.69260 1.22663 0.87521 0.93930 0.93985 0.91007 1.21350 1.02170 0.86644 0.88304 1.45665 1.69450 1.07806 1.11585 1.14805 0.76389 0.81290 0.85324 1.90824 1.53818 1.76451 1.24049 1.20460 1.07186 1.01982 0.97217 1.22149 0.92012 0.94525 0.93869 1.19323 1.02218 1.00851 0.88204 1.23267 1.02724 0.99642 0.92965 1.23252 0.95149 0.99183 1.01489 1.21598 0.99004 0.86188 0.94191 0.93926 0.98295 0.91355 0.87319 0.92955 0.88485 0.91217 0.74689 0.82392 0.88699 0.84882 0.84933 0.89095 0.96236 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 11.14 21.65 0.24 -54.52 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.26 -14.28 9.65 84.03 0.81 -13.47 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 9 N -0.61 -30.53 3.05 -697.55 -2.13 -32.65 16 10 C 0.14 6.80 5.45 86.35 0.47 7.27 16 11 C 0.05 1.97 6.98 72.08 0.50 2.47 16 12 O -0.39 -13.91 10.33 -148.98 -1.54 -15.45 16 13 C 0.08 2.60 2.81 30.70 0.09 2.68 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.14 4.06 5.34 86.38 0.46 4.53 16 16 N -0.69 -18.64 5.50 -470.73 -2.59 -21.23 16 17 C 0.63 19.36 7.65 85.49 0.65 20.02 16 18 O -0.57 -21.57 17.08 -4.07 -0.07 -21.64 16 19 C -0.27 -6.97 13.61 30.01 0.41 -6.56 16 20 C -0.02 -0.48 13.47 31.12 0.42 -0.06 16 21 C -0.09 -1.04 6.21 -12.60 -0.08 -1.12 16 22 C -0.15 -1.20 10.21 30.62 0.31 -0.89 16 23 C -0.15 -1.32 10.21 30.62 0.31 -1.01 16 24 C 0.12 4.75 6.02 86.36 0.52 5.27 16 25 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.07 3.61 6.14 -2.38 -0.01 3.60 16 28 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.42 9.52 8.44 -92.70 -0.78 8.73 16 33 H 0.16 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 Total: -1.00 -70.42 337.03 1.53 -68.89 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.28 Total: 13.90 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.30 Total: 16.74 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.47 Total: -108.39 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.61 Total: -37.08 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.42 1.53 -68.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666703460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.002 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds