Wall clock time and date at job start Mon Mar 30 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48507 * 109.47293 * 274.43214 * 3 2 1 5 5 H 1.48504 * 109.47310 * 34.42742 * 3 2 1 6 6 H 1.48501 * 109.47588 * 154.42822 * 3 2 1 7 7 C 1.38815 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 163.16679 * 7 2 1 9 9 N 1.36933 * 119.99980 * 343.17032 * 7 2 1 10 10 C 1.47159 * 120.98194 * 333.63185 * 9 7 2 11 11 C 1.53290 * 108.38574 * 230.51500 * 10 9 7 12 12 O 1.42963 * 109.22118 * 307.69597 * 11 10 9 13 13 C 1.42962 * 114.16734 * 62.58299 * 12 11 10 14 14 H 1.08992 * 109.55518 * 57.36886 * 13 12 11 15 15 C 1.53006 * 109.51419 * 177.49742 * 13 12 11 16 16 N 1.46496 * 109.46630 * 299.74548 * 15 13 12 17 17 C 1.34782 * 119.99956 * 179.97438 * 16 15 13 18 18 O 1.21616 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.43198 * 120.00042 * 180.02562 * 17 16 15 20 20 C 9.38267 * 123.95789 * 153.79665 * 7 1 2 21 21 C 9.59600 * 153.93211 * 135.14414 * 9 1 2 22 22 C 1.53000 * 117.49816 * 144.77598 * 21 20 19 23 23 C 1.52994 * 59.99893 * 252.50730 * 22 21 20 24 24 C 1.47155 * 120.98467 * 153.60713 * 9 7 2 25 25 H 0.96999 * 120.00042 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.67921 * 350.23575 * 10 9 7 27 27 H 1.09004 * 109.67821 * 110.74921 * 10 9 7 28 28 H 1.08998 * 109.51486 * 67.61915 * 11 10 9 29 29 H 1.08995 * 109.51131 * 187.77661 * 11 10 9 30 30 H 1.08999 * 109.46957 * 59.73989 * 15 13 12 31 31 H 1.08998 * 109.46945 * 179.74678 * 15 13 12 32 32 H 0.97006 * 120.00513 * 359.97438 * 16 15 13 33 33 H 1.08999 * 115.54957 * 290.47889 * 21 20 19 34 34 H 1.09002 * 117.49901 * 359.97438 * 22 21 20 35 35 H 1.09001 * 117.50085 * 145.01396 * 22 21 20 36 36 H 1.08998 * 117.49998 * 252.50679 * 23 22 21 37 37 H 1.09005 * 117.51749 * 107.48060 * 23 22 21 38 38 H 1.08991 * 109.67722 * 9.76427 * 24 9 7 39 39 H 1.08996 * 109.71112 * 249.22761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4040 2.1006 -1.3959 5 1 1.4975 2.6239 0.7916 6 1 3.5914 1.4151 0.6043 7 6 2.0103 -1.2021 0.0005 8 1 3.0556 -1.2223 -0.2703 9 7 1.3697 -2.3625 0.3444 10 6 0.1978 -2.3457 1.2343 11 6 0.4251 -3.3694 2.3524 12 8 0.7644 -4.6316 1.7731 13 6 1.9801 -4.6226 1.0210 14 1 2.8004 -4.2910 1.6575 15 6 2.2720 -6.0328 0.5042 16 7 2.4129 -6.9490 1.6387 17 6 2.6736 -8.2536 1.4229 18 8 2.7924 -8.6701 0.2864 19 6 2.8108 -9.1493 2.5317 20 6 2.9249 -9.8833 3.4408 21 6 3.0665 -10.8040 4.5807 22 6 4.3223 -11.6764 4.6323 23 6 2.9685 -12.3036 4.2939 24 6 1.8325 -3.6630 -0.1654 25 1 -0.4850 0.8400 -0.0004 26 1 0.0784 -1.3517 1.6654 27 1 -0.6959 -2.6106 0.6693 28 1 1.2393 -3.0328 2.9943 29 1 -0.4856 -3.4726 2.9422 30 1 1.4503 -6.3644 -0.1307 31 1 3.1966 -6.0242 -0.0729 32 1 2.3185 -6.6168 2.5451 33 1 2.6632 -10.4452 5.5276 34 1 5.0435 -11.5689 3.8221 35 1 4.7456 -11.8916 5.6135 36 1 2.5011 -12.9316 5.0524 37 1 2.7988 -12.6085 3.2612 38 1 2.7954 -3.5413 -0.6612 39 1 1.1039 -4.0615 -0.8714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666703480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:54 Heat of formation + Delta-G solvation = 21.363602 kcal Electronic energy + Delta-G solvation = -20607.989089 eV Core-core repulsion = 17325.871231 eV Total energy + Delta-G solvation = -3282.117857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.71196 -38.45746 -37.94940 -34.96164 -34.31303 -32.98000 -31.54517 -30.65847 -27.70054 -26.06560 -24.44355 -23.21331 -22.87633 -22.24349 -21.44306 -19.87882 -18.68745 -17.03585 -16.89033 -16.22606 -15.96919 -15.42580 -15.04761 -14.98144 -14.43442 -14.39170 -13.82073 -13.29563 -13.14622 -12.95965 -12.79516 -12.59569 -12.18540 -11.98187 -11.71303 -11.54881 -11.15534 -10.89050 -10.76414 -10.58893 -10.43905 -10.31043 -10.23570 -10.03225 -10.00973 -9.70051 -9.12087 -9.06219 -8.57564 -6.78942 -5.87587 -3.31301 1.37798 2.09019 2.97441 3.14643 3.32000 3.39389 3.41395 3.74242 3.96955 4.21469 4.32806 4.40417 4.51066 4.61510 5.06366 5.15563 5.20016 5.30104 5.39494 5.43300 5.49421 5.57967 5.61831 5.76159 5.80359 5.99221 6.11171 6.23773 6.33428 6.41188 6.45187 6.71943 7.02777 7.06634 7.43563 7.48481 7.67719 7.80944 8.09602 8.30013 9.07988 9.70704 10.27454 11.20653 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.002786 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.164926 B =10048.735437 C =10171.307037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.704 5.704 17 C 0.630 3.370 18 O -0.529 6.529 19 C -0.209 4.209 20 C -0.062 4.062 21 C -0.064 4.064 22 C -0.160 4.160 23 C -0.161 4.161 24 C 0.122 3.878 25 H 0.255 0.745 26 H 0.094 0.906 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -18.166 10.836 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.355 5.355 17 C 0.416 3.584 18 O -0.407 6.407 19 C -0.212 4.212 20 C -0.064 4.064 21 C -0.082 4.082 22 C -0.197 4.197 23 C -0.198 4.198 24 C -0.006 4.006 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.196 -18.407 9.994 21.580 hybrid contribution 0.357 1.422 0.404 1.521 sum 5.553 -16.985 10.398 20.674 Atomic orbital electron populations 1.70034 1.05291 1.25684 1.53653 1.25058 0.95356 0.98522 1.00728 0.86240 0.79135 0.83421 0.77730 1.21324 1.21469 1.20377 1.19192 0.92615 0.84431 1.42272 0.91321 1.44071 1.33652 1.01017 1.53029 1.21448 0.89157 0.98287 0.89766 1.23331 0.99061 0.84840 0.96564 1.87782 1.41224 1.32749 1.69196 1.22826 0.87651 0.93647 0.95462 0.92190 1.21538 1.02495 0.87152 0.88131 1.45787 1.70950 1.07296 1.11432 1.14659 0.77334 0.81069 0.85338 1.90858 1.50749 1.77013 1.22127 1.20715 1.05180 0.99463 0.95826 1.21303 0.94718 0.96154 0.94254 1.18915 1.05347 0.89637 0.94316 1.23109 0.90939 1.01477 1.04157 1.23117 1.00182 0.92614 1.03861 1.21442 0.99065 0.87205 0.92853 0.93479 0.88764 0.95313 0.94056 0.89992 0.90227 0.89681 0.75736 0.84615 0.88054 0.87344 0.87363 0.88004 0.91667 0.95121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.15 55.49 0.62 -25.16 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.25 29.59 -169.99 -5.03 16.22 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.69 3.05 -171.82 -0.52 -15.22 16 10 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.20 10.14 -35.23 -0.36 -7.56 16 13 C 0.06 1.10 2.86 -26.57 -0.08 1.03 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.96 5.37 -4.04 -0.02 1.94 16 16 N -0.70 -9.84 5.44 -62.76 -0.34 -10.18 16 17 C 0.63 9.67 7.65 -14.33 -0.11 9.56 16 18 O -0.53 -9.84 17.09 5.26 0.09 -9.75 16 19 C -0.21 -2.81 13.61 -38.84 -0.53 -3.34 16 20 C -0.06 -0.69 13.47 -37.12 -0.50 -1.19 16 21 C -0.06 -0.47 6.22 -93.41 -0.58 -1.05 16 22 C -0.16 -0.92 10.21 -26.73 -0.27 -1.20 16 23 C -0.16 -0.95 10.21 -26.74 -0.27 -1.22 16 24 C 0.12 2.50 6.02 -3.53 -0.02 2.47 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.41 5.06 8.32 -40.82 -0.34 4.72 16 33 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -32.01 336.74 -8.54 -40.54 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.69 Total: 1.83 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.37 Total: 4.20 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.25 Total: -50.56 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.27 Total: -17.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.01 -8.54 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666703480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.909 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds