Wall clock time and date at job start Mon Mar 30 2020 23:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48507 * 109.47293 * 274.43214 * 3 2 1 5 5 H 1.48504 * 109.47310 * 34.42742 * 3 2 1 6 6 H 1.48501 * 109.47588 * 154.42822 * 3 2 1 7 7 C 1.38815 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 163.16679 * 7 2 1 9 9 N 1.36933 * 119.99980 * 343.17032 * 7 2 1 10 10 C 1.47159 * 120.98194 * 333.63185 * 9 7 2 11 11 C 1.53290 * 108.38574 * 230.51500 * 10 9 7 12 12 O 1.42963 * 109.22118 * 307.69597 * 11 10 9 13 13 C 1.42962 * 114.16734 * 62.58299 * 12 11 10 14 14 H 1.08992 * 109.55518 * 57.36886 * 13 12 11 15 15 C 1.53006 * 109.51419 * 177.49742 * 13 12 11 16 16 N 1.46496 * 109.46630 * 299.74548 * 15 13 12 17 17 C 1.34782 * 119.99956 * 179.97438 * 16 15 13 18 18 O 1.21616 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.43198 * 120.00042 * 180.02562 * 17 16 15 20 20 C 9.38267 * 123.95789 * 153.79665 * 7 1 2 21 21 C 9.59600 * 153.93211 * 135.14414 * 9 1 2 22 22 C 1.53000 * 117.49816 * 144.77598 * 21 20 19 23 23 C 1.52994 * 59.99893 * 252.50730 * 22 21 20 24 24 C 1.47155 * 120.98467 * 153.60713 * 9 7 2 25 25 H 0.96999 * 120.00042 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.67921 * 350.23575 * 10 9 7 27 27 H 1.09004 * 109.67821 * 110.74921 * 10 9 7 28 28 H 1.08998 * 109.51486 * 67.61915 * 11 10 9 29 29 H 1.08995 * 109.51131 * 187.77661 * 11 10 9 30 30 H 1.08999 * 109.46957 * 59.73989 * 15 13 12 31 31 H 1.08998 * 109.46945 * 179.74678 * 15 13 12 32 32 H 0.97006 * 120.00513 * 359.97438 * 16 15 13 33 33 H 1.08999 * 115.54957 * 290.47889 * 21 20 19 34 34 H 1.09002 * 117.49901 * 359.97438 * 22 21 20 35 35 H 1.09001 * 117.50085 * 145.01396 * 22 21 20 36 36 H 1.08998 * 117.49998 * 252.50679 * 23 22 21 37 37 H 1.09005 * 117.51749 * 107.48060 * 23 22 21 38 38 H 1.08991 * 109.67722 * 9.76427 * 24 9 7 39 39 H 1.08996 * 109.71112 * 249.22761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4040 2.1006 -1.3959 5 1 1.4975 2.6239 0.7916 6 1 3.5914 1.4151 0.6043 7 6 2.0103 -1.2021 0.0005 8 1 3.0556 -1.2223 -0.2703 9 7 1.3697 -2.3625 0.3444 10 6 0.1978 -2.3457 1.2343 11 6 0.4251 -3.3694 2.3524 12 8 0.7644 -4.6316 1.7731 13 6 1.9801 -4.6226 1.0210 14 1 2.8004 -4.2910 1.6575 15 6 2.2720 -6.0328 0.5042 16 7 2.4129 -6.9490 1.6387 17 6 2.6736 -8.2536 1.4229 18 8 2.7924 -8.6701 0.2864 19 6 2.8108 -9.1493 2.5317 20 6 2.9249 -9.8833 3.4408 21 6 3.0665 -10.8040 4.5807 22 6 4.3223 -11.6764 4.6323 23 6 2.9685 -12.3036 4.2939 24 6 1.8325 -3.6630 -0.1654 25 1 -0.4850 0.8400 -0.0004 26 1 0.0784 -1.3517 1.6654 27 1 -0.6959 -2.6106 0.6693 28 1 1.2393 -3.0328 2.9943 29 1 -0.4856 -3.4726 2.9422 30 1 1.4503 -6.3644 -0.1307 31 1 3.1966 -6.0242 -0.0729 32 1 2.3185 -6.6168 2.5451 33 1 2.6632 -10.4452 5.5276 34 1 5.0435 -11.5689 3.8221 35 1 4.7456 -11.8916 5.6135 36 1 2.5011 -12.9316 5.0524 37 1 2.7988 -12.6085 3.2612 38 1 2.7954 -3.5413 -0.6612 39 1 1.1039 -4.0615 -0.8714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666703480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:53 Heat of formation + Delta-G solvation = 0.159651 kcal Electronic energy + Delta-G solvation = -20608.908561 eV Core-core repulsion = 17325.871231 eV Total energy + Delta-G solvation = -3283.037330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97705 -39.98492 -38.49924 -36.56238 -35.85626 -33.95435 -33.32725 -32.27497 -29.34956 -27.60701 -25.57180 -24.90765 -23.55236 -23.29674 -22.60412 -21.53946 -19.83951 -18.86228 -17.70641 -17.62643 -17.27393 -16.89363 -16.33605 -16.13807 -15.91822 -15.65712 -15.50641 -15.04085 -14.69068 -14.50342 -13.89888 -13.54686 -13.25358 -13.06165 -12.97614 -12.71609 -12.51993 -12.42646 -12.34516 -12.19843 -12.09338 -11.89323 -11.70735 -11.32231 -11.06744 -10.82297 -10.77631 -10.56174 -10.26359 -8.76928 -7.92442 -5.39812 0.37229 1.15237 1.46218 1.47614 1.57799 1.92693 2.24943 2.47023 2.73480 3.06409 3.12101 3.23192 3.46850 3.81980 3.91460 3.99482 4.02851 4.04144 4.22640 4.42424 4.48712 4.49570 4.60421 4.70885 4.74537 4.76765 4.88097 4.97021 5.03564 5.09328 5.18020 5.21475 5.23065 5.54519 5.60351 6.11476 6.23192 6.29726 6.32468 6.94830 7.05000 7.72971 8.26596 9.13856 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.002786 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.164926 B =10048.735437 C =10171.307037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.079 3.921 14 H 0.072 0.928 15 C 0.139 3.861 16 N -0.694 5.694 17 C 0.634 3.366 18 O -0.571 6.571 19 C -0.265 4.265 20 C -0.024 4.024 21 C -0.087 4.087 22 C -0.150 4.150 23 C -0.155 4.155 24 C 0.116 3.884 25 H 0.252 0.748 26 H 0.068 0.932 27 H -0.001 1.001 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -19.601 13.058 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.310 6.310 13 C 0.019 3.981 14 H 0.090 0.910 15 C 0.015 3.985 16 N -0.344 5.344 17 C 0.422 3.578 18 O -0.453 6.453 19 C -0.268 4.268 20 C -0.026 4.026 21 C -0.105 4.105 22 C -0.187 4.187 23 C -0.191 4.191 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.536 -19.860 12.243 24.229 hybrid contribution -0.050 1.765 -0.272 1.786 sum 6.487 -18.095 11.971 22.645 Atomic orbital electron populations 1.70191 1.06757 1.26086 1.55163 1.25848 0.96109 1.01688 1.01014 0.85201 0.78216 0.79241 0.77396 1.21393 1.21721 1.19158 1.19556 0.93029 0.85498 1.41505 0.90876 1.44353 1.33737 1.01933 1.53740 1.21318 0.87954 0.98399 0.90637 1.23168 1.00805 0.83527 0.94838 1.87798 1.41840 1.32225 1.69144 1.22667 0.87536 0.93930 0.93975 0.91031 1.21365 1.02719 0.86053 0.88321 1.45640 1.70376 1.06881 1.11549 1.14811 0.76338 0.81347 0.85333 1.90823 1.52856 1.77720 1.23861 1.20467 1.08243 1.01191 0.96930 1.22157 0.91816 0.94852 0.93817 1.19363 1.07455 0.89830 0.93819 1.23238 0.90368 0.99813 1.05254 1.23242 1.00385 0.91453 1.04062 1.21600 0.98999 0.86216 0.94181 0.93918 0.91390 0.98307 0.92960 0.87287 0.91287 0.88463 0.74635 0.82040 0.89112 0.84666 0.84764 0.89271 0.90682 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.79 11.15 21.65 0.24 -54.55 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.27 -14.38 9.65 84.03 0.81 -13.56 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -30.57 3.05 -697.53 -2.13 -32.70 16 10 C 0.14 6.82 5.44 86.35 0.47 7.29 16 11 C 0.05 1.98 6.98 72.08 0.50 2.48 16 12 O -0.39 -13.87 10.14 -148.98 -1.51 -15.38 16 13 C 0.08 2.60 2.86 30.70 0.09 2.69 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.14 4.08 5.37 86.38 0.46 4.54 16 16 N -0.69 -18.81 5.44 -470.73 -2.56 -21.37 16 17 C 0.63 19.45 7.65 85.49 0.65 20.11 16 18 O -0.57 -21.62 17.09 -4.08 -0.07 -21.69 16 19 C -0.27 -7.01 13.61 30.02 0.41 -6.60 16 20 C -0.02 -0.50 13.47 31.13 0.42 -0.08 16 21 C -0.09 -1.02 6.22 -12.60 -0.08 -1.10 16 22 C -0.15 -1.26 10.21 30.59 0.31 -0.95 16 23 C -0.15 -1.37 10.21 30.59 0.31 -1.06 16 24 C 0.12 4.76 6.02 86.35 0.52 5.28 16 25 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 26 H 0.07 3.60 6.15 -2.39 -0.01 3.58 16 27 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.42 9.72 8.32 -92.70 -0.77 8.95 16 33 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -70.49 336.74 1.59 -68.90 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.29 Total: 14.18 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.30 Total: 16.64 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.45 Total: -108.62 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.58 Total: -37.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.49 1.59 -68.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666703480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.056 kcal (2) G-P(sol) polarization free energy of solvation -70.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds