Wall clock time and date at job start Tue Mar 31 2020 00:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.01748 * 305.70630 * 11 10 9 13 13 C 1.54269 * 110.02920 * 67.09590 * 11 10 9 14 14 C 1.54895 * 104.19678 * 142.89395 * 13 11 10 15 15 C 1.54889 * 102.74421 * 322.05801 * 14 13 11 16 16 C 1.53874 * 110.03233 * 184.31000 * 11 10 9 17 17 H 1.08995 * 110.03118 * 121.43097 * 16 11 10 18 18 N 1.46508 * 110.03017 * 0.02562 * 16 11 10 19 19 C 1.34775 * 119.99371 * 155.00031 * 18 16 11 20 20 O 1.21696 * 120.00473 * 359.97438 * 19 18 16 21 21 C 1.46660 * 119.99514 * 180.02562 * 19 18 16 22 22 C 1.36546 * 125.98618 * 179.71652 * 21 19 18 23 23 C 1.40372 * 106.70520 * 179.85371 * 22 21 19 24 24 C 1.35127 * 107.11376 * 0.40125 * 23 22 21 25 25 O 1.33929 * 108.77224 * 359.75292 * 24 23 22 26 26 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 29 29 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 30 30 H 1.08999 * 110.48343 * 261.57074 * 13 11 10 31 31 H 1.09002 * 110.48923 * 24.08131 * 13 11 10 32 32 H 1.08999 * 110.75301 * 80.36998 * 14 13 11 33 33 H 1.08994 * 110.75522 * 203.74115 * 14 13 11 34 34 H 1.09003 * 110.48459 * 156.61952 * 15 14 13 35 35 H 1.09004 * 110.48737 * 279.12933 * 15 14 13 36 36 H 0.96995 * 120.00028 * 334.99372 * 18 16 11 37 37 H 1.07992 * 126.64454 * 359.95741 * 22 21 19 38 38 H 1.07998 * 126.43993 * 180.15667 * 23 22 21 39 39 H 1.08001 * 125.61151 * 179.77843 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3682 -4.7151 0.8317 13 6 0.2904 -4.8545 -1.3350 14 6 0.1244 -6.3643 -1.6387 15 6 1.4753 -6.9580 -1.1679 16 6 1.8174 -6.1571 0.1067 17 1 1.4866 -6.7019 0.9909 18 7 3.2607 -5.9158 0.1765 19 6 4.0680 -6.8232 0.7609 20 8 3.5980 -7.8426 1.2308 21 6 5.5128 -6.5814 0.8313 22 6 6.4384 -7.4106 1.3971 23 6 7.6874 -6.7904 1.2366 24 6 7.4711 -5.6205 0.5960 25 8 6.1596 -5.4980 0.3535 26 1 -0.4850 -0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6843 -3.7140 -0.8921 29 1 2.6855 -3.7148 0.8878 30 1 -0.6838 -4.3784 -1.2235 31 1 0.8649 -4.3659 -2.1220 32 1 -0.7027 -6.7847 -1.0665 33 1 -0.0194 -6.5300 -2.7063 34 1 1.3659 -8.0171 -0.9345 35 1 2.2417 -6.8133 -1.9294 36 1 3.6353 -5.1032 -0.1978 37 1 6.2469 -8.3604 1.8740 38 1 8.6414 -7.1742 1.5668 39 1 8.2307 -4.9026 0.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667700680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:39 Heat of formation + Delta-G solvation = -12.442840 kcal Electronic energy + Delta-G solvation = -21654.943541 eV Core-core repulsion = 18371.359726 eV Total energy + Delta-G solvation = -3283.583815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.80121 -40.01080 -38.02222 -34.69109 -33.85710 -33.10767 -31.47112 -30.22423 -28.40769 -27.51571 -24.35858 -23.40076 -22.69634 -21.90645 -20.69705 -20.39744 -19.14052 -18.68083 -17.29394 -16.57294 -16.43164 -16.05228 -15.30524 -14.80114 -14.53100 -14.41393 -13.88937 -13.68968 -13.35377 -13.30682 -13.15470 -13.01089 -12.83290 -12.28406 -11.77186 -11.30672 -10.91725 -10.79525 -10.61303 -10.55278 -10.48089 -10.33917 -10.24390 -10.23012 -10.02322 -9.20296 -9.14709 -8.90511 -8.76926 -7.03145 -6.12470 -3.12342 0.95019 2.19615 2.58031 3.12923 3.21490 3.50118 3.55035 3.68906 4.48223 4.61752 4.70180 4.72793 4.73294 4.88094 5.02455 5.36049 5.44508 5.50905 5.53477 5.59380 5.60656 5.66321 5.73585 5.76818 5.82937 5.96823 6.02990 6.07219 6.13739 6.19671 6.34709 6.47443 6.47855 6.59656 6.68518 6.73602 7.47287 7.78363 8.05919 8.74123 9.20632 10.07014 10.21958 11.36215 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.005197 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.692916 B = 5386.461584 C = 7142.938684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.110 4.110 12 H 0.082 0.918 13 C -0.113 4.113 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.148 3.852 17 H 0.093 0.907 18 N -0.708 5.708 19 C 0.601 3.399 20 O -0.528 6.528 21 C -0.076 4.076 22 C -0.124 4.124 23 C -0.229 4.229 24 C -0.005 4.005 25 O -0.160 6.160 26 H 0.255 0.745 27 H 0.368 0.632 28 H 0.019 0.981 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.412 0.588 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.793 -15.067 -1.231 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.464 4.464 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.034 3.966 11 C -0.129 4.129 12 H 0.101 0.899 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.043 3.957 17 H 0.111 0.889 18 N -0.361 5.361 19 C 0.387 3.613 20 O -0.407 6.407 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.248 4.248 24 C -0.075 4.075 25 O -0.055 6.055 26 H 0.066 0.934 27 H 0.201 0.799 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.361 -13.856 -1.057 17.334 hybrid contribution 0.437 -1.360 -0.005 1.428 sum 10.797 -15.216 -1.063 18.688 Atomic orbital electron populations 1.70854 1.06041 1.28439 1.53569 1.25768 0.97051 1.00969 1.00376 0.83201 0.73871 0.75335 0.76257 1.22311 1.22169 1.21350 1.20049 0.92018 0.85801 1.48526 0.91784 1.42322 1.04883 1.00698 1.90610 1.20620 0.93232 0.85169 0.97536 1.22253 0.97955 0.93555 0.99146 0.89921 1.22370 1.00538 0.95407 0.96714 1.22481 0.96740 0.96064 1.00851 1.22791 0.97856 0.99489 0.96941 1.21750 0.78501 0.96263 0.99158 0.88894 1.46345 1.08047 1.23232 1.58467 1.16603 0.82609 0.83672 0.78456 1.90852 1.74247 1.27078 1.48505 1.22184 0.93687 0.89355 1.07602 1.21953 0.91288 1.00923 1.00350 1.21849 0.99393 0.96874 1.06649 1.24454 0.82769 0.99622 1.00666 1.84122 1.19755 1.39200 1.62417 0.93361 0.79881 0.96363 0.96010 0.91315 0.90942 0.91413 0.91463 0.91238 0.91207 0.74831 0.82320 0.82648 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.08 13.70 55.49 0.76 -28.32 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.90 29.92 -169.99 -5.09 20.81 16 4 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.33 -9.37 9.99 -15.06 -0.15 -9.52 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 9 N -0.74 -18.42 5.44 -59.91 -0.33 -18.75 16 10 C 0.16 3.21 4.18 -4.04 -0.02 3.19 16 11 C -0.11 -1.76 2.97 -89.50 -0.27 -2.02 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.11 -1.67 6.05 -25.07 -0.15 -1.82 16 14 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 15 C -0.13 -1.67 6.53 -25.02 -0.16 -1.84 16 16 C 0.15 2.13 3.23 -66.75 -0.22 1.91 16 17 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 18 N -0.71 -10.41 4.40 -53.98 -0.24 -10.65 16 19 C 0.60 9.21 7.78 -12.86 -0.10 9.11 16 20 O -0.53 -9.18 16.52 5.19 0.09 -9.10 16 21 C -0.08 -1.05 7.13 -36.79 -0.26 -1.31 16 22 C -0.12 -1.47 10.62 -39.39 -0.42 -1.89 16 23 C -0.23 -2.15 10.87 -39.89 -0.43 -2.58 16 24 C 0.00 -0.05 12.08 29.63 0.36 0.31 16 25 O -0.16 -2.05 10.40 4.99 0.05 -2.00 16 26 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 27 H 0.37 9.35 6.36 -40.82 -0.26 9.09 16 28 H 0.02 0.37 7.08 -51.93 -0.37 0.00 16 29 H 0.02 0.45 7.46 -51.93 -0.39 0.07 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.17 7.77 -51.93 -0.40 0.77 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.41 6.09 5.64 -40.82 -0.23 5.86 16 37 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -33.32 324.96 -7.27 -40.59 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.33 Total: 11.99 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.09 Total: -9.48 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.20 Total: -57.72 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.14 Total: -11.10 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.32 -7.27 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667700680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.148 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds