Wall clock time and date at job start Tue Mar 31 2020 00:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00480 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00497 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00327 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.01748 * 305.70630 * 11 10 9 13 13 C 1.54269 * 110.02920 * 67.09590 * 11 10 9 14 14 C 1.54895 * 104.19678 * 142.89395 * 13 11 10 15 15 C 1.54889 * 102.74421 * 322.05801 * 14 13 11 16 16 C 1.53874 * 110.03233 * 184.31000 * 11 10 9 17 17 H 1.08995 * 110.03118 * 121.43097 * 16 11 10 18 18 N 1.46508 * 110.03017 * 0.02562 * 16 11 10 19 19 C 1.34775 * 119.99371 * 155.00031 * 18 16 11 20 20 O 1.21696 * 120.00473 * 359.97438 * 19 18 16 21 21 C 1.46660 * 119.99514 * 180.02562 * 19 18 16 22 22 C 1.36546 * 125.98618 * 179.71652 * 21 19 18 23 23 C 1.40372 * 106.70520 * 179.85371 * 22 21 19 24 24 C 1.35127 * 107.11376 * 0.40125 * 23 22 21 25 25 O 1.33929 * 108.77224 * 359.75292 * 24 23 22 26 26 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 29 29 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 30 30 H 1.08999 * 110.48343 * 261.57074 * 13 11 10 31 31 H 1.09002 * 110.48923 * 24.08131 * 13 11 10 32 32 H 1.08999 * 110.75301 * 80.36998 * 14 13 11 33 33 H 1.08994 * 110.75522 * 203.74115 * 14 13 11 34 34 H 1.09003 * 110.48459 * 156.61952 * 15 14 13 35 35 H 1.09004 * 110.48737 * 279.12933 * 15 14 13 36 36 H 0.96995 * 120.00028 * 334.99372 * 18 16 11 37 37 H 1.07992 * 126.64454 * 359.95741 * 22 21 19 38 38 H 1.07998 * 126.43993 * 180.15667 * 23 22 21 39 39 H 1.08001 * 125.61151 * 179.77843 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4404 -0.7001 6 1 1.4476 2.6528 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3682 -4.7151 0.8317 13 6 0.2904 -4.8545 -1.3350 14 6 0.1244 -6.3643 -1.6387 15 6 1.4753 -6.9580 -1.1679 16 6 1.8174 -6.1571 0.1067 17 1 1.4866 -6.7019 0.9909 18 7 3.2607 -5.9158 0.1765 19 6 4.0680 -6.8232 0.7609 20 8 3.5980 -7.8426 1.2308 21 6 5.5128 -6.5814 0.8313 22 6 6.4384 -7.4106 1.3971 23 6 7.6874 -6.7904 1.2366 24 6 7.4711 -5.6205 0.5960 25 8 6.1596 -5.4980 0.3535 26 1 -0.4850 -0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6843 -3.7140 -0.8921 29 1 2.6855 -3.7148 0.8878 30 1 -0.6838 -4.3784 -1.2235 31 1 0.8649 -4.3659 -2.1220 32 1 -0.7027 -6.7847 -1.0665 33 1 -0.0194 -6.5300 -2.7063 34 1 1.3659 -8.0171 -0.9345 35 1 2.2417 -6.8133 -1.9294 36 1 3.6353 -5.1032 -0.1978 37 1 6.2469 -8.3604 1.8740 38 1 8.6414 -7.1742 1.5668 39 1 8.2307 -4.9026 0.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667700680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:38 Heat of formation + Delta-G solvation = -34.570614 kcal Electronic energy + Delta-G solvation = -21655.903073 eV Core-core repulsion = 18371.359726 eV Total energy + Delta-G solvation = -3284.543347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.67434 -41.21734 -39.28560 -36.60288 -34.98297 -34.01822 -33.33674 -31.15621 -30.03238 -28.61663 -26.16198 -24.53880 -24.42266 -22.73657 -21.77219 -21.46665 -20.47718 -19.84980 -19.19595 -17.67842 -17.38267 -17.25883 -16.51802 -16.33621 -15.88778 -15.71795 -15.58005 -15.18456 -14.89947 -14.57400 -14.18738 -13.95873 -13.63380 -13.57425 -13.03645 -12.87712 -12.64493 -12.33842 -12.01557 -11.89788 -11.85200 -11.81393 -11.59112 -11.48141 -11.22011 -11.07209 -10.95474 -10.30375 -9.67879 -9.13672 -8.41145 -5.35401 -0.00995 1.40359 1.58106 1.66271 1.68740 1.82976 2.04262 2.16147 2.70057 3.31304 3.38797 3.56952 3.69424 3.74132 3.94072 3.98545 4.08333 4.27142 4.36745 4.38364 4.42079 4.52312 4.59951 4.66322 4.79289 4.87161 4.87630 4.92693 4.98864 5.11674 5.14815 5.23488 5.33892 5.39558 5.41137 5.56832 5.82610 6.32039 6.48724 6.89331 7.07469 7.97618 8.08720 9.11043 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.005197 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.692916 B = 5386.461584 C = 7142.938684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.101 4.101 3 Si 1.130 2.870 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.292 1.292 7 C -0.337 4.337 8 H 0.066 0.934 9 N -0.752 5.752 10 C 0.166 3.834 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.125 4.125 16 C 0.151 3.849 17 H 0.088 0.912 18 N -0.708 5.708 19 C 0.599 3.401 20 O -0.557 6.557 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.230 4.230 24 C 0.005 3.995 25 O -0.179 6.179 26 H 0.245 0.755 27 H 0.362 0.638 28 H 0.024 0.976 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.164 0.836 38 H 0.188 0.812 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -15.557 -1.608 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.293 4.293 3 Si 0.954 3.046 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.219 1.219 7 C -0.468 4.468 8 H 0.084 0.916 9 N -0.396 5.396 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.106 0.894 18 N -0.360 5.360 19 C 0.387 3.613 20 O -0.438 6.438 21 C -0.168 4.168 22 C -0.141 4.141 23 C -0.248 4.248 24 C -0.064 4.064 25 O -0.075 6.075 26 H 0.055 0.945 27 H 0.195 0.805 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.182 0.818 38 H 0.205 0.795 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.382 -14.390 -1.438 19.038 hybrid contribution -0.060 -1.251 0.141 1.260 sum 12.322 -15.640 -1.297 19.953 Atomic orbital electron populations 1.70965 1.07165 1.27951 1.56110 1.27200 0.97108 1.04603 1.00359 0.82604 0.73632 0.71530 0.76818 1.21276 1.19682 1.21852 1.20404 0.92367 0.87071 1.46940 0.91604 1.42514 1.04855 1.01699 1.90574 1.20702 0.93730 0.84559 0.97067 1.22152 0.97247 0.92931 0.99777 0.90590 1.22314 0.99589 0.97607 0.95359 1.22440 0.96785 0.93386 1.02220 1.22744 0.98169 0.99637 0.95803 1.21727 0.78315 0.95235 1.00089 0.89370 1.46330 1.08099 1.23148 1.58438 1.16819 0.83493 0.83192 0.77751 1.90817 1.75104 1.28093 1.49831 1.21957 0.93217 0.90933 1.10671 1.22271 0.92130 1.00760 0.98952 1.22236 0.99664 0.96589 1.06357 1.25410 0.82006 1.00246 0.98746 1.84104 1.21313 1.39111 1.62927 0.94488 0.80537 0.95852 0.96764 0.91983 0.92429 0.90027 0.89693 0.90335 0.91150 0.75013 0.81834 0.79451 0.73307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.70 21.65 0.30 -60.62 16 2 C -0.10 -5.88 5.50 84.86 0.47 -5.42 16 3 Si 1.13 51.79 29.92 68.60 2.05 53.84 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.34 -19.01 9.99 84.03 0.84 -18.17 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.75 -38.06 5.44 -343.44 -1.87 -39.93 16 10 C 0.17 6.65 4.18 86.38 0.36 7.01 16 11 C -0.10 -3.28 2.97 -10.07 -0.03 -3.31 16 12 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.11 -3.26 6.05 31.67 0.19 -3.07 16 14 C -0.11 -2.47 6.91 31.89 0.22 -2.25 16 15 C -0.13 -3.01 6.53 31.70 0.21 -2.80 16 16 C 0.15 4.32 3.23 45.75 0.15 4.47 16 17 H 0.09 2.63 7.56 -2.39 -0.02 2.61 16 18 N -0.71 -21.00 4.40 -442.90 -1.95 -22.95 16 19 C 0.60 18.61 7.78 86.44 0.67 19.28 16 20 O -0.56 -19.64 16.52 -4.34 -0.07 -19.71 16 21 C -0.12 -3.16 7.13 24.07 0.17 -2.99 16 22 C -0.12 -2.70 10.62 22.39 0.24 -2.46 16 23 C -0.23 -3.67 10.87 22.07 0.24 -3.43 16 24 C 0.01 0.08 12.08 67.10 0.81 0.89 16 25 O -0.18 -4.40 10.40 -5.08 -0.05 -4.45 16 26 H 0.24 15.23 6.77 -92.70 -0.63 14.60 16 27 H 0.36 18.94 6.36 -92.71 -0.59 18.35 16 28 H 0.02 0.93 7.08 -2.39 -0.02 0.92 16 29 H 0.01 0.61 7.46 -2.39 -0.02 0.59 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.86 7.77 -2.39 -0.02 1.84 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 36 H 0.41 12.29 5.64 -92.71 -0.52 11.77 16 37 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 38 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.25 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -72.41 324.96 3.04 -69.37 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.10 Total: 36.70 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.54 Total: -12.25 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -3.52 Total: -123.50 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.12 Total: -24.16 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -72.41 3.04 -69.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667700680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -72.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds