Wall clock time and date at job start Tue Mar 31 2020 00:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.02013 * 53.60814 * 11 10 9 13 13 C 1.54264 * 110.03002 * 292.16334 * 11 10 9 14 14 C 1.54897 * 104.19675 * 217.10856 * 13 11 10 15 15 C 1.54887 * 102.74744 * 37.94098 * 14 13 11 16 16 C 1.53874 * 110.03037 * 175.00175 * 11 10 9 17 17 H 1.09000 * 110.03070 * 238.57126 * 16 11 10 18 18 N 1.46501 * 110.03407 * 359.94644 * 16 11 10 19 19 C 1.34780 * 120.00157 * 205.00617 * 18 16 11 20 20 O 1.21614 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.47373 * 119.99818 * 180.02562 * 19 18 16 22 22 C 1.47028 * 127.18983 * 179.97438 * 21 19 18 23 23 C 1.34181 * 105.95135 * 179.97438 * 22 21 19 24 24 O 1.34213 * 109.12605 * 0.02562 * 23 22 21 25 25 C 1.33649 * 110.90767 * 359.72783 * 24 23 22 26 26 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 29 29 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 30 30 H 1.08998 * 110.49133 * 335.78593 * 13 11 10 31 31 H 1.09000 * 110.48973 * 98.43075 * 13 11 10 32 32 H 1.08998 * 110.75483 * 279.63133 * 14 13 11 33 33 H 1.08991 * 110.91636 * 156.33038 * 14 13 11 34 34 H 1.09001 * 110.48698 * 203.37806 * 15 14 13 35 35 H 1.09006 * 110.48488 * 80.73848 * 15 14 13 36 36 H 0.96998 * 120.00086 * 25.00128 * 18 16 11 37 37 H 1.07995 * 127.02263 * 359.97438 * 22 21 19 38 38 H 1.07999 * 125.43326 * 179.97438 * 23 22 21 39 39 H 1.08000 * 125.80232 * 180.28962 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3600 -4.7083 -0.8258 13 6 0.3045 -4.8663 1.3408 14 6 0.1417 -6.3788 1.6328 15 6 1.4875 -6.9683 1.1425 16 6 1.8162 -6.1561 -0.1271 17 1 1.4767 -6.6936 -1.0125 18 7 3.2587 -5.9142 -0.2100 19 6 4.0600 -6.8167 -0.8099 20 8 3.5857 -7.8321 -1.2822 21 6 5.5112 -6.5736 -0.8927 22 6 6.5246 -7.4444 -1.5063 23 6 7.6987 -6.8156 -1.3431 24 8 7.4916 -5.6588 -0.6948 25 6 6.1943 -5.4911 -0.4210 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0002 28 1 2.6849 -3.7145 0.8894 29 1 2.6848 -3.7144 -0.8906 30 1 0.8883 -4.3868 2.1264 31 1 -0.6708 -4.3894 1.2440 32 1 -0.6913 -6.7942 1.0658 33 1 0.0078 -6.5568 2.6997 34 1 1.3756 -8.0253 0.9010 35 1 2.2625 -6.8282 1.8962 36 1 3.6371 -5.1045 0.1669 37 1 6.3581 -8.3957 -1.9895 38 1 8.6574 -7.1822 -1.6791 39 1 5.7606 -4.6436 0.0889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667710730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:10 Heat of formation + Delta-G solvation = -14.024392 kcal Electronic energy + Delta-G solvation = -21554.549428 eV Core-core repulsion = 18270.897032 eV Total energy + Delta-G solvation = -3283.652396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.64929 -39.91053 -37.85748 -34.40167 -33.70625 -32.80586 -31.44442 -30.06331 -28.58872 -27.43309 -24.63563 -23.60756 -22.51766 -21.58185 -20.60612 -20.18837 -19.05064 -18.49879 -17.14738 -16.44690 -16.25717 -15.71907 -15.18304 -14.91517 -14.79587 -14.45703 -13.98681 -13.65915 -13.40610 -13.07343 -13.00507 -12.94267 -12.51689 -12.17892 -11.66252 -11.32339 -10.91166 -10.86423 -10.81119 -10.50012 -10.41485 -10.30321 -9.99331 -9.93761 -9.92869 -9.73154 -9.04463 -8.94694 -8.82203 -6.98234 -5.81675 -3.10873 1.26422 1.94966 2.78957 3.24938 3.39659 3.40133 3.45074 3.47552 4.45709 4.52425 4.57908 4.72383 4.82925 4.98274 5.10884 5.36588 5.45058 5.50574 5.51518 5.63181 5.66040 5.75456 5.79734 5.85380 5.91996 6.05428 6.13202 6.16285 6.19460 6.29492 6.42176 6.56274 6.59479 6.70411 6.78908 6.80741 7.60091 7.63679 8.29902 8.36735 9.48389 10.05521 10.40155 11.41073 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.005119 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.424843 B = 5468.809580 C = 7251.142789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.157 3.843 11 C -0.108 4.108 12 H 0.083 0.917 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.132 4.132 16 C 0.150 3.850 17 H 0.090 0.910 18 N -0.716 5.716 19 C 0.585 3.415 20 O -0.544 6.544 21 C -0.235 4.235 22 C -0.166 4.166 23 C -0.045 4.045 24 O -0.174 6.174 25 C 0.025 3.975 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.016 0.984 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.404 0.596 37 H 0.158 0.842 38 H 0.208 0.792 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -14.640 1.273 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.029 3.971 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.045 3.955 17 H 0.108 0.892 18 N -0.370 5.370 19 C 0.373 3.627 20 O -0.423 6.423 21 C -0.240 4.240 22 C -0.185 4.185 23 C -0.111 4.111 24 O -0.069 6.069 25 C -0.046 4.046 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.242 0.758 37 H 0.176 0.824 38 H 0.224 0.776 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.000 -15.036 0.999 18.086 hybrid contribution 0.190 1.255 0.059 1.270 sum 10.191 -13.781 1.058 17.173 Atomic orbital electron populations 1.69664 1.05125 1.25617 1.57521 1.24737 0.95505 0.97699 1.02842 0.86136 0.78755 0.84157 0.77232 1.20569 1.21841 1.21830 1.19238 0.90986 0.84149 1.42979 0.91202 1.42330 1.05926 0.99694 1.89315 1.20692 0.93474 0.85761 0.97204 1.22224 0.97994 0.93425 0.99105 0.89871 1.22356 1.00797 0.95111 0.96629 1.22490 0.96796 0.96289 1.00681 1.22765 0.97815 0.99407 0.97044 1.21666 0.78827 0.96104 0.98912 0.89178 1.46248 1.08120 1.23617 1.58979 1.17296 0.84601 0.83174 0.77657 1.90753 1.76138 1.27379 1.47991 1.21595 0.94788 0.98054 1.09549 1.22771 0.90625 1.01568 1.03547 1.23933 1.00429 0.85723 1.00994 1.83803 1.26878 1.37187 1.59036 1.24579 0.80697 0.99497 0.99799 0.93500 0.78106 0.96618 0.96127 0.91002 0.91152 0.91548 0.91618 0.91462 0.91336 0.75778 0.82416 0.77592 0.77073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.61 5.45 -59.91 -0.33 -17.94 16 10 C 0.16 2.91 4.18 -4.04 -0.02 2.89 16 11 C -0.11 -1.69 2.96 -89.50 -0.27 -1.96 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.63 6.08 -25.07 -0.15 -1.79 16 14 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 15 C -0.13 -1.67 6.53 -25.07 -0.16 -1.83 16 16 C 0.15 2.13 3.22 -66.81 -0.22 1.91 16 17 H 0.09 1.37 7.56 -51.93 -0.39 0.98 16 18 N -0.72 -9.87 4.38 -53.81 -0.24 -10.10 16 19 C 0.59 8.81 7.81 -12.54 -0.10 8.72 16 20 O -0.54 -9.87 16.64 5.27 0.09 -9.78 16 21 C -0.24 -3.03 6.31 -103.28 -0.65 -3.68 16 22 C -0.17 -1.85 11.01 -37.45 -0.41 -2.27 16 23 C -0.04 -0.40 12.03 29.30 0.35 -0.05 16 24 O -0.17 -1.84 10.52 7.67 0.08 -1.75 16 25 C 0.02 0.27 11.61 30.08 0.35 0.61 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.39 9.89 7.55 -40.82 -0.31 9.58 16 28 H 0.02 0.29 7.11 -51.93 -0.37 -0.08 16 29 H 0.02 0.40 7.42 -51.93 -0.39 0.01 16 30 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 36 H 0.40 5.10 4.87 -40.82 -0.20 4.90 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.21 1.72 7.47 -52.49 -0.39 1.33 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -32.85 325.84 -6.85 -39.70 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.37 Total: 11.17 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.69 Total: -6.22 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.16 Total: -54.90 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.17 Total: -11.54 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.85 -6.85 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667710730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.673 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds