Wall clock time and date at job start Tue Mar 31 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.02013 * 53.60814 * 11 10 9 13 13 C 1.54264 * 110.03002 * 292.16334 * 11 10 9 14 14 C 1.54897 * 104.19675 * 217.10856 * 13 11 10 15 15 C 1.54887 * 102.74744 * 37.94098 * 14 13 11 16 16 C 1.53874 * 110.03037 * 175.00175 * 11 10 9 17 17 H 1.09000 * 110.03070 * 238.57126 * 16 11 10 18 18 N 1.46501 * 110.03407 * 359.94644 * 16 11 10 19 19 C 1.34780 * 120.00157 * 205.00617 * 18 16 11 20 20 O 1.21614 * 119.99968 * 359.97438 * 19 18 16 21 21 C 1.47373 * 119.99818 * 180.02562 * 19 18 16 22 22 C 1.47028 * 127.18983 * 179.97438 * 21 19 18 23 23 C 1.34181 * 105.95135 * 179.97438 * 22 21 19 24 24 O 1.34213 * 109.12605 * 0.02562 * 23 22 21 25 25 C 1.33649 * 110.90767 * 359.72783 * 24 23 22 26 26 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 29 29 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 30 30 H 1.08998 * 110.49133 * 335.78593 * 13 11 10 31 31 H 1.09000 * 110.48973 * 98.43075 * 13 11 10 32 32 H 1.08998 * 110.75483 * 279.63133 * 14 13 11 33 33 H 1.08991 * 110.91636 * 156.33038 * 14 13 11 34 34 H 1.09001 * 110.48698 * 203.37806 * 15 14 13 35 35 H 1.09006 * 110.48488 * 80.73848 * 15 14 13 36 36 H 0.96998 * 120.00086 * 25.00128 * 18 16 11 37 37 H 1.07995 * 127.02263 * 359.97438 * 22 21 19 38 38 H 1.07999 * 125.43326 * 179.97438 * 23 22 21 39 39 H 1.08000 * 125.80232 * 180.28962 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3600 -4.7083 -0.8258 13 6 0.3045 -4.8663 1.3408 14 6 0.1417 -6.3788 1.6328 15 6 1.4875 -6.9683 1.1425 16 6 1.8162 -6.1561 -0.1271 17 1 1.4767 -6.6936 -1.0125 18 7 3.2587 -5.9142 -0.2100 19 6 4.0600 -6.8167 -0.8099 20 8 3.5857 -7.8321 -1.2822 21 6 5.5112 -6.5736 -0.8927 22 6 6.5246 -7.4444 -1.5063 23 6 7.6987 -6.8156 -1.3431 24 8 7.4916 -5.6588 -0.6948 25 6 6.1943 -5.4911 -0.4210 26 1 -0.4851 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0002 28 1 2.6849 -3.7145 0.8894 29 1 2.6848 -3.7144 -0.8906 30 1 0.8883 -4.3868 2.1264 31 1 -0.6708 -4.3894 1.2440 32 1 -0.6913 -6.7942 1.0658 33 1 0.0078 -6.5568 2.6997 34 1 1.3756 -8.0253 0.9010 35 1 2.2625 -6.8282 1.8962 36 1 3.6371 -5.1045 0.1669 37 1 6.3581 -8.3957 -1.9895 38 1 8.6574 -7.1822 -1.6791 39 1 5.7606 -4.6436 0.0889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667710730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:09 Heat of formation + Delta-G solvation = -35.809393 kcal Electronic energy + Delta-G solvation = -21555.494097 eV Core-core repulsion = 18270.897032 eV Total energy + Delta-G solvation = -3284.597064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.47075 -41.10538 -39.10553 -36.21328 -34.86955 -33.68614 -33.28894 -30.91673 -30.15795 -28.53783 -26.35661 -24.64140 -24.22318 -22.37701 -21.67905 -21.24949 -20.37015 -19.56993 -18.93378 -17.56901 -17.09486 -16.88738 -16.56049 -16.31939 -15.87767 -15.79188 -15.25004 -15.10476 -14.95513 -14.57934 -14.29683 -13.83588 -13.50832 -13.33621 -13.12348 -12.86842 -12.77675 -12.34723 -12.11050 -11.93269 -11.77664 -11.72563 -11.54587 -11.44874 -11.14912 -10.92799 -10.84906 -10.10819 -9.72978 -8.98143 -7.93110 -5.21711 0.34796 1.14544 1.49572 1.50128 1.59611 2.00144 2.19398 2.32002 2.57448 3.40463 3.45137 3.66632 3.68305 3.77952 3.86061 4.11750 4.18815 4.38664 4.47119 4.50376 4.53386 4.59470 4.67484 4.75473 4.76714 4.91760 4.98971 5.00840 5.08076 5.22566 5.26618 5.34728 5.35629 5.48757 5.51156 5.55152 5.99558 6.28526 6.48850 7.15956 7.35834 8.11047 8.33855 9.30759 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.005119 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.424843 B = 5468.809580 C = 7251.142789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.295 1.295 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.078 0.922 18 N -0.710 5.710 19 C 0.584 3.416 20 O -0.583 6.583 21 C -0.268 4.268 22 C -0.195 4.195 23 C -0.023 4.023 24 O -0.177 6.177 25 C 0.037 3.963 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.033 0.967 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.158 0.842 38 H 0.250 0.750 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.040 -14.952 1.894 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.384 5.384 10 C 0.031 3.969 11 C -0.120 4.120 12 H 0.089 0.911 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.049 3.951 17 H 0.096 0.904 18 N -0.363 5.363 19 C 0.374 3.626 20 O -0.464 6.464 21 C -0.272 4.272 22 C -0.214 4.214 23 C -0.088 4.088 24 O -0.072 6.072 25 C -0.034 4.034 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.176 0.824 38 H 0.266 0.734 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.109 -15.365 1.632 19.631 hybrid contribution -0.388 1.290 -0.162 1.357 sum 11.722 -14.075 1.470 18.376 Atomic orbital electron populations 1.69818 1.06666 1.25906 1.59661 1.25530 0.96301 1.01021 1.03841 0.85121 0.78469 0.80026 0.76439 1.18678 1.22520 1.22204 1.19692 0.91677 0.85140 1.40818 0.90105 1.42543 1.05683 1.00956 1.89235 1.20841 0.93884 0.84561 0.97606 1.22113 0.97393 0.93049 0.99437 0.91059 1.22292 0.99790 0.97034 0.95562 1.22442 0.96755 0.93897 1.01982 1.22709 0.98251 0.99225 0.96119 1.21583 0.78969 0.95161 0.99431 0.90373 1.46181 1.07843 1.23655 1.58646 1.17627 0.85598 0.82587 0.76832 1.90723 1.77002 1.28952 1.49769 1.21601 0.93870 0.99909 1.11860 1.22955 0.91256 1.02219 1.05004 1.24681 1.01284 0.84255 0.98621 1.83843 1.26560 1.37777 1.58984 1.24929 0.80649 0.99196 0.98603 0.94126 0.79397 0.94934 0.96089 0.91910 0.92257 0.90624 0.89826 0.91153 0.90808 0.75089 0.82396 0.73396 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 44.84 29.55 68.60 2.03 46.86 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -12.85 9.99 84.03 0.84 -12.01 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -35.78 5.45 -343.45 -1.87 -37.65 16 10 C 0.16 5.73 4.18 86.38 0.36 6.09 16 11 C -0.10 -3.11 2.96 -10.07 -0.03 -3.14 16 12 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.11 -3.12 6.08 31.67 0.19 -2.93 16 14 C -0.11 -2.53 6.91 31.89 0.22 -2.31 16 15 C -0.12 -2.96 6.53 31.67 0.21 -2.76 16 16 C 0.15 4.27 3.22 45.71 0.15 4.42 16 17 H 0.08 2.39 7.56 -2.39 -0.02 2.37 16 18 N -0.71 -19.00 4.38 -442.41 -1.94 -20.93 16 19 C 0.58 17.45 7.81 86.65 0.68 18.13 16 20 O -0.58 -21.42 16.64 -4.07 -0.07 -21.49 16 21 C -0.27 -6.64 6.31 -18.99 -0.12 -6.76 16 22 C -0.19 -4.14 11.01 23.65 0.26 -3.87 16 23 C -0.02 -0.35 12.03 66.89 0.80 0.45 16 24 O -0.18 -3.24 10.52 4.52 0.05 -3.20 16 25 C 0.04 0.72 11.61 67.39 0.78 1.50 16 26 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.37 19.52 7.55 -92.71 -0.70 18.82 16 28 H 0.03 1.11 7.11 -2.39 -0.02 1.09 16 29 H 0.02 0.78 7.42 -2.39 -0.02 0.76 16 30 H 0.06 1.91 7.76 -2.39 -0.02 1.90 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.69 8.05 -2.38 -0.02 1.68 16 36 H 0.41 9.78 4.87 -92.71 -0.45 9.33 16 37 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.25 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.23 3.21 7.47 -2.91 -0.02 3.19 16 Total: -1.00 -70.77 325.84 3.21 -67.56 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.08 Total: 33.71 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.81 Total: -6.89 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.53 Total: -116.56 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.02 Total: -24.69 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.77 3.21 -67.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667710730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.749 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds