Wall clock time and date at job start Tue Mar 31 2020 00:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9 13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9 14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10 15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11 16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13 17 17 H 1.08996 * 110.03379 * 119.28795 * 16 15 14 18 18 N 1.46504 * 110.03394 * 240.71488 * 16 15 14 19 19 C 1.34775 * 119.99895 * 272.16973 * 18 16 15 20 20 O 1.21609 * 120.00179 * 359.97438 * 19 18 16 21 21 C 1.47379 * 119.99818 * 179.97438 * 19 18 16 22 22 C 1.47025 * 127.19119 * 179.97438 * 21 19 18 23 23 C 1.34178 * 105.95112 * 180.02562 * 22 21 19 24 24 O 1.34216 * 109.12860 * 0.02562 * 23 22 21 25 25 C 1.33658 * 110.90700 * 359.71947 * 24 23 22 26 26 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 29 29 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 30 30 H 1.09004 * 110.75596 * 274.93646 * 13 11 10 31 31 H 1.08992 * 110.75389 * 38.30384 * 13 11 10 32 32 H 1.09000 * 110.48214 * 203.38065 * 14 13 11 33 33 H 1.09000 * 110.48593 * 80.74090 * 14 13 11 34 34 H 1.09001 * 110.02914 * 264.32888 * 15 14 13 35 35 H 1.08992 * 110.03108 * 142.89691 * 15 14 13 36 36 H 0.97003 * 119.99806 * 92.16440 * 18 16 15 37 37 H 1.07995 * 127.02437 * 0.02921 * 22 21 19 38 38 H 1.08004 * 125.43661 * 180.02562 * 23 22 21 39 39 H 1.07997 * 125.80599 * 180.28920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3428 -4.7047 0.8096 13 6 0.3385 -4.9124 -1.3658 14 6 -0.1121 -6.3936 -1.4136 15 6 1.0592 -7.1663 -0.7729 16 6 1.8067 -6.1657 0.1259 17 1 1.7880 -6.5072 1.1608 18 7 3.1913 -6.0190 -0.3298 19 6 4.1443 -6.8533 0.1308 20 8 3.8549 -7.7277 0.9249 21 6 5.5371 -6.7060 -0.3281 22 6 6.6943 -7.5217 0.0683 23 6 7.7446 -7.0209 -0.6000 24 8 7.3346 -5.9895 -1.3546 25 6 6.0211 -5.7872 -1.2127 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3881 0.0005 28 1 2.6845 -3.7147 -0.8894 29 1 2.6845 -3.7147 0.8905 30 1 -0.5232 -4.2454 -1.3918 31 1 1.0247 -4.6908 -2.1831 32 1 -0.2616 -6.7137 -2.4448 33 1 -1.0243 -6.5337 -0.8336 34 1 1.7266 -7.5427 -1.5481 35 1 0.6778 -7.9933 -0.1741 36 1 3.4221 -5.3213 -0.9630 37 1 6.6982 -8.3539 0.7566 38 1 8.7582 -7.3891 -0.5401 39 1 5.4417 -5.0245 -1.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667710732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:15 Heat of formation + Delta-G solvation = -16.756992 kcal Electronic energy + Delta-G solvation = -21543.717569 eV Core-core repulsion = 18259.946679 eV Total energy + Delta-G solvation = -3283.770890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.65599 -39.90513 -37.82191 -34.41979 -33.61052 -32.78396 -31.44780 -30.05924 -28.60621 -27.53660 -24.61091 -23.63575 -22.35736 -21.59319 -20.44633 -20.24491 -19.23978 -18.52428 -17.13198 -16.46009 -16.26605 -15.68824 -15.01891 -14.92756 -14.87296 -14.40317 -14.13352 -13.61256 -13.43201 -13.08815 -13.02443 -12.86314 -12.53941 -12.30290 -11.56568 -11.25596 -10.88254 -10.87784 -10.80337 -10.50988 -10.38259 -10.34683 -10.02999 -9.94366 -9.93106 -9.70997 -9.04163 -8.90001 -8.86684 -6.96006 -5.79609 -3.08518 1.25593 1.94465 2.77814 3.23869 3.39954 3.41757 3.46533 3.47334 4.44904 4.52687 4.57460 4.71209 4.82154 4.96969 5.07605 5.36219 5.45697 5.50705 5.51847 5.63311 5.67365 5.75740 5.81018 5.84672 5.92191 6.05372 6.10353 6.12665 6.20590 6.28415 6.47438 6.52140 6.65293 6.73112 6.78571 6.80285 7.60119 7.65580 8.29862 8.39122 9.50492 10.07792 10.42622 11.43088 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.004973 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.646669 B = 5628.625046 C = 7243.262579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.165 3.835 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.149 3.851 17 H 0.090 0.910 18 N -0.713 5.713 19 C 0.586 3.414 20 O -0.543 6.543 21 C -0.234 4.234 22 C -0.166 4.166 23 C -0.045 4.045 24 O -0.175 6.175 25 C 0.024 3.976 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.013 0.987 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.158 0.842 38 H 0.207 0.793 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.164 -15.419 -4.185 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.037 3.963 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.108 0.892 18 N -0.366 5.366 19 C 0.373 3.627 20 O -0.422 6.422 21 C -0.239 4.239 22 C -0.185 4.185 23 C -0.111 4.111 24 O -0.069 6.069 25 C -0.046 4.046 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.238 0.762 37 H 0.176 0.824 38 H 0.224 0.776 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 9.262 -15.750 -3.788 18.660 hybrid contribution 0.185 1.197 -0.126 1.218 sum 9.447 -14.553 -3.914 17.786 Atomic orbital electron populations 1.69645 1.05110 1.25813 1.57496 1.24729 0.95502 0.97665 1.02874 0.86280 0.78549 0.83576 0.77840 1.21278 1.21652 1.21272 1.19157 0.90940 0.84188 1.43061 0.91335 1.42331 1.05888 0.99784 1.89350 1.20573 0.93067 0.85426 0.97276 1.22489 0.98094 0.93216 0.98881 0.89305 1.22509 1.00529 0.95326 0.96638 1.22393 0.97777 0.95867 1.00277 1.22574 0.97419 0.98005 0.98996 1.21635 0.79575 0.95491 0.98880 0.89200 1.46117 1.08458 1.34683 1.47332 1.17275 0.83467 0.81379 0.80552 1.90758 1.82507 1.34291 1.34596 1.21598 0.95361 1.01850 1.05075 1.22774 0.90390 1.02214 1.03133 1.23932 1.00305 0.90364 0.96454 1.83803 1.23919 1.43781 1.55442 1.24560 0.81633 0.99695 0.98762 0.93428 0.78163 0.96986 0.96181 0.90766 0.91497 0.91911 0.91605 0.91562 0.91423 0.76164 0.82415 0.77595 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.79 5.49 -59.90 -0.33 -18.12 16 10 C 0.16 3.11 4.73 -4.04 -0.02 3.09 16 11 C -0.11 -1.67 2.84 -88.96 -0.25 -1.92 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 13 C -0.11 -1.61 6.19 -24.74 -0.15 -1.76 16 14 C -0.13 -1.49 6.83 -25.07 -0.17 -1.66 16 15 C -0.13 -1.62 6.59 -25.61 -0.17 -1.79 16 16 C 0.15 2.09 3.12 -66.81 -0.21 1.88 16 17 H 0.09 1.38 7.56 -51.93 -0.39 0.99 16 18 N -0.71 -9.58 4.33 -53.81 -0.23 -9.81 16 19 C 0.59 8.71 7.81 -12.54 -0.10 8.61 16 20 O -0.54 -9.83 16.64 5.27 0.09 -9.74 16 21 C -0.23 -2.97 6.31 -103.27 -0.65 -3.62 16 22 C -0.17 -1.84 11.01 -37.45 -0.41 -2.25 16 23 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 24 O -0.17 -1.80 10.52 7.64 0.08 -1.72 16 25 C 0.02 0.25 11.61 30.08 0.35 0.60 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.38 9.89 7.64 -40.82 -0.31 9.58 16 28 H 0.01 0.22 6.41 -51.93 -0.33 -0.11 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.96 7.96 -51.93 -0.41 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 4.83 5.53 -40.82 -0.23 4.61 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.21 1.61 7.47 -52.49 -0.39 1.21 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -33.10 327.09 -6.85 -39.95 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.41 Total: 10.49 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.68 Total: -6.04 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.16 Total: -54.92 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.17 Total: -11.46 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.10 -6.85 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667710732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.197 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds