Wall clock time and date at job start Tue Mar 31 2020 00:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.43391 * 307.53554 * 11 10 9 13 13 C 1.54892 * 110.48790 * 70.22392 * 11 10 9 14 14 C 1.54892 * 102.74537 * 156.62129 * 13 11 10 15 15 C 1.54264 * 104.19740 * 322.05738 * 14 13 11 16 16 C 1.53873 * 106.59940 * 23.61232 * 15 14 13 17 17 H 1.08996 * 110.03379 * 119.28795 * 16 15 14 18 18 N 1.46504 * 110.03394 * 240.71488 * 16 15 14 19 19 C 1.34775 * 119.99895 * 272.16973 * 18 16 15 20 20 O 1.21609 * 120.00179 * 359.97438 * 19 18 16 21 21 C 1.47379 * 119.99818 * 179.97438 * 19 18 16 22 22 C 1.47025 * 127.19119 * 179.97438 * 21 19 18 23 23 C 1.34178 * 105.95112 * 180.02562 * 22 21 19 24 24 O 1.34216 * 109.12860 * 0.02562 * 23 22 21 25 25 C 1.33658 * 110.90700 * 359.71947 * 24 23 22 26 26 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 29 29 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 30 30 H 1.09004 * 110.75596 * 274.93646 * 13 11 10 31 31 H 1.08992 * 110.75389 * 38.30384 * 13 11 10 32 32 H 1.09000 * 110.48214 * 203.38065 * 14 13 11 33 33 H 1.09000 * 110.48593 * 80.74090 * 14 13 11 34 34 H 1.09001 * 110.02914 * 264.32888 * 15 14 13 35 35 H 1.08992 * 110.03108 * 142.89691 * 15 14 13 36 36 H 0.97003 * 119.99806 * 92.16440 * 18 16 15 37 37 H 1.07995 * 127.02437 * 0.02921 * 22 21 19 38 38 H 1.08004 * 125.43661 * 180.02562 * 23 22 21 39 39 H 1.07997 * 125.80599 * 180.28920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 1 0.3428 -4.7047 0.8096 13 6 0.3385 -4.9124 -1.3658 14 6 -0.1121 -6.3936 -1.4136 15 6 1.0592 -7.1663 -0.7729 16 6 1.8067 -6.1657 0.1259 17 1 1.7880 -6.5072 1.1608 18 7 3.1913 -6.0190 -0.3298 19 6 4.1443 -6.8533 0.1308 20 8 3.8549 -7.7277 0.9249 21 6 5.5371 -6.7060 -0.3281 22 6 6.6943 -7.5217 0.0683 23 6 7.7446 -7.0209 -0.6000 24 8 7.3346 -5.9895 -1.3546 25 6 6.0211 -5.7872 -1.2127 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3881 0.0005 28 1 2.6845 -3.7147 -0.8894 29 1 2.6845 -3.7147 0.8905 30 1 -0.5232 -4.2454 -1.3918 31 1 1.0247 -4.6908 -2.1831 32 1 -0.2616 -6.7137 -2.4448 33 1 -1.0243 -6.5337 -0.8336 34 1 1.7266 -7.5427 -1.5481 35 1 0.6778 -7.9933 -0.1741 36 1 3.4221 -5.3213 -0.9630 37 1 6.6982 -8.3539 0.7566 38 1 8.7582 -7.3891 -0.5401 39 1 5.4417 -5.0245 -1.7117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667710732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:14 Heat of formation + Delta-G solvation = -38.848764 kcal Electronic energy + Delta-G solvation = -21544.675540 eV Core-core repulsion = 18259.946679 eV Total energy + Delta-G solvation = -3284.728861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.46250 -41.08466 -39.05814 -36.24834 -34.75445 -33.65631 -33.30980 -30.89961 -30.18152 -28.62275 -26.34305 -24.69522 -24.05288 -22.37713 -21.47808 -21.32362 -20.53170 -19.56405 -18.95201 -17.55386 -17.09228 -16.82339 -16.62000 -16.17274 -15.86107 -15.81020 -15.24996 -15.15644 -14.99191 -14.51688 -14.35022 -13.83517 -13.59526 -13.34872 -13.12626 -12.79763 -12.66709 -12.27818 -12.21492 -11.97361 -11.82028 -11.65002 -11.55504 -11.46468 -11.13270 -10.89135 -10.84463 -10.11873 -9.72369 -8.98261 -7.93292 -5.21825 0.35943 1.14878 1.48991 1.51373 1.57399 2.00694 2.19966 2.33269 2.57232 3.39032 3.44775 3.66871 3.68600 3.78605 3.87199 4.12221 4.19864 4.38870 4.49328 4.52347 4.55697 4.61729 4.68268 4.76477 4.78437 4.86000 5.01818 5.02834 5.11398 5.23641 5.25797 5.34886 5.37050 5.47428 5.52443 5.56104 6.00036 6.28413 6.51002 7.17722 7.35663 8.11045 8.34512 9.30016 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.004973 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.646669 B = 5628.625046 C = 7243.262579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.741 5.741 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.074 0.926 18 N -0.706 5.706 19 C 0.585 3.415 20 O -0.584 6.584 21 C -0.268 4.268 22 C -0.196 4.196 23 C -0.023 4.023 24 O -0.177 6.177 25 C 0.038 3.962 26 H 0.251 0.749 27 H 0.375 0.625 28 H 0.033 0.967 29 H 0.009 0.991 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.409 0.591 37 H 0.157 0.843 38 H 0.249 0.751 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -15.749 -5.440 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.039 3.961 11 C -0.119 4.119 12 H 0.096 0.904 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.092 0.908 18 N -0.358 5.358 19 C 0.374 3.626 20 O -0.466 6.466 21 C -0.272 4.272 22 C -0.215 4.215 23 C -0.089 4.089 24 O -0.072 6.072 25 C -0.033 4.033 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.175 0.825 38 H 0.265 0.735 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 10.997 -16.095 -5.063 20.140 hybrid contribution -0.272 1.247 0.282 1.307 sum 10.726 -14.848 -4.781 18.931 Atomic orbital electron populations 1.69802 1.06584 1.26095 1.59397 1.25518 0.96315 1.00958 1.03681 0.85259 0.77234 0.79376 0.78167 1.20077 1.22320 1.20775 1.19583 0.91509 0.85305 1.41322 0.90576 1.42526 1.05665 1.00948 1.89270 1.20700 0.93553 0.84515 0.97315 1.22357 0.97387 0.92620 0.99559 0.90392 1.22452 0.99772 0.96863 0.95598 1.22332 0.97645 0.93637 1.01533 1.22507 0.97402 0.97582 0.98731 1.21530 0.80042 0.94879 0.98702 0.90801 1.46030 1.08085 1.34617 1.47104 1.17612 0.84427 0.80720 0.79830 1.90727 1.83264 1.36037 1.36526 1.21596 0.94608 1.03939 1.07098 1.22953 0.90841 1.03103 1.04640 1.24663 1.01330 0.88672 0.94192 1.83845 1.23701 1.44130 1.55504 1.24955 0.81778 0.99052 0.97467 0.94046 0.79316 0.94965 0.97331 0.92387 0.91295 0.90035 0.90909 0.91100 0.90908 0.75289 0.82515 0.73461 0.74728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.25 -13.30 9.99 84.04 0.84 -12.46 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -36.24 5.49 -343.44 -1.89 -38.13 16 10 C 0.17 6.20 4.73 86.38 0.41 6.61 16 11 C -0.10 -3.07 2.84 -9.72 -0.03 -3.10 16 12 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 13 C -0.11 -3.01 6.19 31.89 0.20 -2.81 16 14 C -0.11 -2.48 6.83 31.67 0.22 -2.26 16 15 C -0.12 -2.87 6.59 31.32 0.21 -2.67 16 16 C 0.15 4.24 3.12 45.71 0.14 4.38 16 17 H 0.07 2.30 7.56 -2.39 -0.02 2.28 16 18 N -0.71 -18.43 4.33 -442.40 -1.92 -20.35 16 19 C 0.58 17.31 7.81 86.65 0.68 17.99 16 20 O -0.58 -21.54 16.64 -4.06 -0.07 -21.61 16 21 C -0.27 -6.55 6.31 -18.99 -0.12 -6.67 16 22 C -0.20 -4.15 11.01 23.65 0.26 -3.89 16 23 C -0.02 -0.35 12.03 66.89 0.80 0.46 16 24 O -0.18 -3.17 10.52 4.41 0.05 -3.12 16 25 C 0.04 0.71 11.61 67.40 0.78 1.49 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.37 19.61 7.64 -92.71 -0.71 18.90 16 28 H 0.03 1.10 6.41 -2.39 -0.02 1.08 16 29 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 9.23 5.53 -92.71 -0.51 8.72 16 37 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.25 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.24 2.93 7.47 -2.91 -0.02 2.91 16 Total: -1.00 -71.54 327.09 3.19 -68.35 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.15 Total: 32.12 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.85 Total: -6.52 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -3.52 Total: -116.45 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.02 Total: -24.73 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.54 3.19 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667710732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.502 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds